Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24065 Brassica carinata HOM05D023852 ORTHO05D032070 1.0e-79 300.1 158 100.0
BolC9t53083H Brassica oleracea HOM05D023852 ORTHO05D032070 8.2e-77 290.4 168 93.5
A03p03950 Brassica napus HOM05D023852 ORTHO05D032070 2.0e-43 179.5 164 59.1
C03p04420 Brassica napus HOM05D023852 ORTHO05D097166 4.0e-31 138.7 101 69.3
BcaB02g08380 Brassica carinata HOM05D023852 ORTHO05D093395 1.5e-14 83.6 51 78.4
AT5G49760 Arabidopsis thaliana HOM05D000166 ORTHO05D000812 6.4e-13 78.2 153 34.0
AL8G23720 Arabidopsis lyrata HOM05D000166 ORTHO05D000812 3.2e-12 75.9 153 33.3
Carub.0008s0962 Capsella rubella HOM05D000166 ORTHO05D000812 9.2e-12 74.3 153 32.7
BcaB01g02949 Brassica carinata HOM05D000166 ORTHO05D000812 2.7e-11 72.8 153 32.7
BolC3t15638H Brassica oleracea HOM05D000166 ORTHO05D000812 6.0e-11 71.6 144 33.3
A10p08700 Brassica napus HOM05D000166 ORTHO05D000812 1.3e-10 70.5 150 33.3
BolC3t15639H Brassica oleracea HOM05D000166 ORTHO05D000812 1.3e-10 70.5 144 34.0
BcaC01g04852 Brassica carinata HOM05D000166 ORTHO05D000812 3.0e-10 69.3 141 33.3
BcaC01g04853 Brassica carinata HOM05D000166 ORTHO05D000812 6.6e-10 68.2 141 32.6
A03p27480 Brassica napus HOM05D000166 ORTHO05D000812 6.6e-10 68.2 152 32.2
BcaB01g02950 Brassica carinata HOM05D000166 ORTHO05D000812 8.6e-10 67.8 152 29.6
C03p33120 Brassica napus HOM05D000166 ORTHO05D000812 8.6e-10 67.8 141 32.6
BraA03t11961Z Brassica rapa HOM05D000166 ORTHO05D000812 1.1e-09 67.4 152 32.2
BcaB07g31314 Brassica carinata HOM05D000166 ORTHO05D000812 1.9e-09 66.6 139 32.4
C03p33140 Brassica napus HOM05D000166 ORTHO05D000812 1.9e-09 66.6 141 33.3
A09p16370 Brassica napus HOM05D000166 ORTHO05D000812 2.5e-09 66.2 150 30.7
Thhalv10012584m.g Eutrema salsugineum HOM05D000166 ORTHO05D000812 4.3e-09 65.5 188 28.7
BcaC04g22387 Brassica carinata HOM05D000166 ORTHO05D000812 7.3e-09 64.7 150 30.0
C09p19880 Brassica napus HOM05D000166 ORTHO05D000812 7.3e-09 64.7 150 30.0
BolC9t54893H Brassica oleracea HOM05D000166 ORTHO05D000812 7.3e-09 64.7 150 30.0
BolC9t54894H Brassica oleracea HOM05D000166 ORTHO05D000812 7.3e-09 64.7 150 30.0
BraA09t37277Z Brassica rapa HOM05D000166 ORTHO05D000812 7.3e-09 64.7 150 32.0
Carub.0008s0963 Capsella rubella HOM05D000166 ORTHO05D000812 1.2e-08 63.9 142 31.7
Carub.0008s0964 Capsella rubella HOM05D000166 ORTHO05D000812 2.8e-08 62.8 133 34.6
Peaxi162Scf00194g00933 Petunia axillaris HOM05D000166 ORTHO05D000812 2.8e-08 62.8 142 30.3
Thhalv10012589m.g Eutrema salsugineum HOM05D000166 ORTHO05D000812 3.6e-08 62.4 151 32.5
BcaB08g35347 Brassica carinata HOM05D000166 ORTHO05D000812 4.7e-08 62.0 151 30.5
BcaC04g20832 Brassica carinata HOM05D000166 ORTHO05D000812 6.2e-08 61.6 100 34.0
A03p27470 Brassica napus HOM05D000166 ORTHO05D000812 6.2e-08 61.6 152 30.3
C09p38700 Brassica napus HOM05D000166 ORTHO05D000812 6.2e-08 61.6 100 34.0
BolC9t56724H Brassica oleracea HOM05D000166 ORTHO05D000812 6.2e-08 61.6 100 34.0
CARHR259030 Cardamine hirsuta HOM05D000166 ORTHO05D000812 6.2e-08 61.6 149 32.9
Zm00001eb138310 Zea mays HOM05D000166 ORTHO05D000812 8.1e-08 61.2 164 26.8
BraA03t11959Z Brassica rapa HOM05D000166 ORTHO05D000812 1.1e-07 60.8 152 29.6
THA.LOC104809042 Tarenaya hassleriana HOM05D000166 ORTHO05D000812 1.4e-07 60.5 142 28.9
Sp6g11130 Schrenkiella parvula HOM05D000166 ORTHO05D000812 1.8e-07 60.1 152 32.9
A09p16390 Brassica napus HOM05D000166 ORTHO05D000812 4.0e-07 58.9 148 28.4
BraA09t37278Z Brassica rapa HOM05D000166 ORTHO05D000812 4.0e-07 58.9 148 28.4
Aa31LG3G6900 Aethionema arabicum HOM05D000166 ORTHO05D000812 1.5e-06 57.0 102 34.3
MBI03_g24429_MAGBIO Magnolia biondii HOM05D000166 ORTHO05D000812 2.0e-06 56.6 140 29.3


User provided reference genes

Program Settings