Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 9.5e-127 456.8 227 100.0
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 3.1e-125 451.8 229 99.1
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.1e-122 443.4 226 97.8
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 7.0e-122 440.7 229 95.6
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 4.3e-119 431.4 228 95.2
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 4.3e-119 431.4 228 95.2
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 8.3e-107 390.6 234 85.9
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.6e-102 376.3 225 81.8
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 4.4e-100 368.2 223 83.9
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.1e-98 363.6 226 80.5
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 2.3e-96 355.9 228 76.3
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 9.6e-95 350.5 223 75.3
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 8.1e-94 347.4 223 78.5
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 7.3e-87 324.3 240 67.9
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.1e-85 320.5 238 69.3
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.1e-85 320.5 241 66.0
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 2.2e-83 312.8 247 64.8
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 5.4e-82 308.1 233 64.4
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.1e-82 307.8 234 64.1
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 9.3e-82 307.4 234 65.8
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.2e-81 307.0 231 64.9
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.6e-81 306.6 233 63.9
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 2.7e-81 305.8 245 63.3
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 4.6e-81 305.1 244 62.7
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 6.0e-81 304.7 234 64.5
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 6.0e-81 304.7 247 60.7
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 6.0e-81 304.7 255 61.6
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 7.9e-81 304.3 247 63.2
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 7.9e-81 304.3 233 63.5
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 1.0e-80 303.9 249 63.5
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.0e-80 303.9 242 64.9
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.3e-80 303.5 223 65.0
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.3e-80 302.8 250 61.6
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 3.0e-80 302.4 238 64.3
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.9e-80 302.0 250 60.0
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 3.9e-80 302.0 255 60.4
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.9e-80 302.0 238 63.4
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.7e-80 301.2 235 63.0
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.5e-79 300.1 229 63.3
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.9e-79 299.7 243 62.1
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.9e-79 299.7 249 61.4
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 2.5e-79 299.3 244 61.9
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 2.5e-79 299.3 246 64.6
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 3.3e-79 298.9 207 70.5
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 3.3e-79 298.9 249 63.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 4.3e-79 298.5 229 64.2
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 5.6e-79 298.1 232 60.3
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 5.6e-79 298.1 232 60.3
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 5.6e-79 298.1 232 62.9
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 7.4e-79 297.7 207 70.0
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 7.4e-79 297.7 252 61.1
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 9.6e-79 297.4 253 58.5
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 9.6e-79 297.4 248 60.5
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.6e-78 296.6 245 61.6
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.6e-78 296.6 234 65.4
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.6e-78 296.6 245 62.0
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.1e-78 296.2 243 61.3
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 2.1e-78 296.2 236 60.6
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.7e-78 295.4 245 61.2
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.7e-78 295.4 247 59.5
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 6.2e-78 294.7 213 65.7
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 8.1e-78 294.3 248 60.1
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 8.1e-78 294.3 239 61.1
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.1e-77 293.9 202 67.8
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.4e-77 293.5 183 73.8
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 2.4e-77 292.7 247 58.3
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 4.0e-77 292.0 242 61.2
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.0e-77 292.0 230 62.6
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 4.0e-77 292.0 230 62.6
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 4.0e-77 292.0 186 75.3
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 5.3e-77 291.6 239 61.5
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 5.3e-77 291.6 239 60.7
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.2e-76 290.4 230 62.2
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.5e-76 290.0 242 62.0
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.0e-76 289.7 243 60.5
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 2.0e-76 289.7 208 66.8
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.8e-76 288.1 183 71.6
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 7.6e-76 287.7 208 64.9
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.0e-75 287.3 265 58.5
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.2e-75 286.2 248 59.3
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 2.2e-75 286.2 204 65.7
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.9e-75 285.8 223 63.2
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 4.9e-75 285.0 246 59.8
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.1e-74 283.9 230 61.7
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.4e-74 283.5 285 55.4
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 5.5e-74 281.6 239 60.3
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 7.1e-74 281.2 268 54.9
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 9.3e-74 280.8 250 58.0
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 7.9e-73 277.7 244 59.0
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.5e-71 273.5 246 56.5
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.9e-71 273.1 242 58.7
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 4.3e-71 271.9 167 76.6
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.2e-70 268.1 246 56.1
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.1e-69 267.3 246 56.1
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 2.4e-69 266.2 172 70.3
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.1e-69 265.4 266 53.8
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 1.7e-67 260.0 213 57.3
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 6.5e-67 258.1 344 45.1
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.7e-65 252.7 176 64.2
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 3.5e-65 252.3 210 61.9
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.8e-64 250.0 180 62.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 6.7e-64 248.1 230 56.1
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.5e-63 246.1 187 65.2
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.3e-63 245.7 185 64.9
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 5.7e-63 245.0 186 65.6
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 8.2e-62 241.1 231 51.1
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 3.1e-61 239.2 206 59.7
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 3.2e-58 229.2 167 64.1
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.2e-58 228.8 243 50.6
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 7.2e-58 228.0 170 61.8
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.2e-57 227.3 244 52.9
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.1e-57 226.5 246 55.3
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 7.9e-57 224.6 178 59.6
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.0e-56 224.2 146 69.9
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.1e-53 212.2 161 60.2
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.5e-52 208.8 183 55.2
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.1e-49 199.9 132 78.0
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 3.9e-48 195.7 230 43.5
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 5.1e-48 195.3 168 61.9
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 4.4e-47 192.2 140 67.1
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 7.4e-47 191.4 182 54.9
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 9.7e-47 191.0 115 75.7
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 9.7e-47 191.0 188 54.3
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.4e-45 187.2 179 55.3
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 5.9e-44 181.8 119 80.7
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 1.0e-43 181.0 182 48.4
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.3e-43 180.6 120 78.3
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 2.8e-38 162.9 116 64.7
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 1.6e-36 157.1 145 57.2
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.7e-35 153.7 134 64.9
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.7e-35 153.7 134 64.9
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 2.5e-34 149.8 159 50.3
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 9.4e-34 147.9 86 75.6
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 9.4e-34 147.9 202 44.1
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.7e-33 145.6 101 69.3
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 6.1e-33 145.2 165 49.7
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.8e-32 143.7 179 45.3
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.8e-32 143.7 144 52.1
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 2.3e-32 143.3 154 50.0
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 2.8e-30 136.3 131 53.4
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 4.8e-30 135.6 95 64.2
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 8.8e-24 114.8 65 81.5
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 4.4e-23 112.5 185 37.3
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 2.4e-21 106.7 67 71.6
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.1e-21 106.3 83 62.7
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-16 90.1 70 61.4
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 6.8e-16 88.6 62 66.1
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-13 81.3 83 60.2
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 3.2e-13 79.7 83 51.8
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 9.2e-13 78.2 68 57.4
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.0e-11 73.2 82 51.2
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 7.3e-10 68.6 103 42.7


User provided reference genes

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