Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23996 Brassica carinata HOM05D006257 ORTHO05D007708 1.9e-111 406.0 220 100.0
BolC9t53138H Brassica oleracea HOM05D006257 ORTHO05D007708 1.0e-109 400.2 220 98.6
C09p02090 Brassica napus HOM05D006257 ORTHO05D007708 2.1e-107 392.5 220 97.3
BraA09t35849Z Brassica rapa HOM05D006257 ORTHO05D007708 1.2e-105 386.7 220 95.9
A09p01980 Brassica napus HOM05D006257 ORTHO05D007708 1.5e-105 386.3 220 96.4
Sp6g02450 Schrenkiella parvula HOM05D006257 ORTHO05D007708 5.3e-98 361.3 221 91.4
Thhalv10028953m.g Eutrema salsugineum HOM05D006257 ORTHO05D007708 1.4e-95 353.2 220 88.6
AL6G50510 Arabidopsis lyrata HOM05D006257 ORTHO05D007708 1.7e-88 329.7 220 84.5
Carub.0006s3460 Capsella rubella HOM05D006257 ORTHO05D007708 1.7e-88 329.7 220 82.3
AT4G02530 Arabidopsis thaliana HOM05D006257 ORTHO05D007708 6.4e-88 327.8 221 84.2
CARHR250830 Cardamine hirsuta HOM05D006257 ORTHO05D007708 6.0e-78 294.7 221 76.5
Aa31LG5G2160 Aethionema arabicum HOM05D006257 ORTHO05D007708 3.8e-72 275.4 232 72.0
THA.LOC104808977 Tarenaya hassleriana HOM05D006257 ORTHO05D007708 2.3e-69 266.2 231 68.0
COL.COLO4_35097 Corchorus olitorius HOM05D006257 ORTHO05D007708 2.4e-58 229.6 233 57.9
Atru.chr7.1126 Acer truncatum HOM05D006257 ORTHO05D007708 4.1e-58 228.8 222 60.8
Ciclev10009322m.g Citrus clementina HOM05D006257 ORTHO05D007708 2.0e-57 226.5 236 57.2
Duzib187G1365 Durio zibethinus HOM05D006257 ORTHO05D007708 2.0e-57 226.5 232 59.1
Duzib168G0222 Durio zibethinus HOM05D006257 ORTHO05D007708 5.9e-57 224.9 210 61.4
Medtr0339s0030 Medicago truncatula HOM05D006257 ORTHO05D007708 2.2e-56 223.0 223 60.5
Thecc.09G128900 Theobroma cacao HOM05D006257 ORTHO05D007708 3.8e-56 222.2 233 56.2
Potri.018G129600 Populus trichocarpa HOM05D006257 ORTHO05D007708 8.5e-56 221.1 174 68.4
Cpa.g.sc46.16 Carica papaya HOM05D006257 ORTHO05D007708 1.4e-55 220.3 185 67.6
CiPaw.03G245900 Carya illinoinensis HOM05D006257 ORTHO05D007708 9.4e-55 217.6 220 58.2
PGR102G0698 Punica granatum HOM05D006257 ORTHO05D007708 2.1e-54 216.5 175 66.9
Manes.06G057000 Manihot esculenta HOM05D006257 ORTHO05D007708 2.7e-54 216.1 209 59.8
VMungo1215G0813 Vigna mungo HOM05D006257 ORTHO05D007708 2.7e-54 216.1 174 67.2
Actinidia21972 Actinidia chinensis HOM05D006257 ORTHO05D007708 4.7e-54 215.3 178 66.9
arahy.Tifrunner.gnm1.ann1.BX3F9W Arachis hypogaea HOM05D006257 ORTHO05D007708 4.7e-54 215.3 212 59.4
MD15G1170900 Malus domestica HOM05D006257 ORTHO05D007708 4.7e-54 215.3 182 66.5
arahy.Tifrunner.gnm1.ann1.FTT948 Arachis hypogaea HOM05D006257 ORTHO05D007708 6.1e-54 214.9 212 59.4
Actinidia40485 Actinidia chinensis HOM05D006257 ORTHO05D007708 7.9e-54 214.5 174 68.4
CsaV3_2G002980 Cucumis sativus L. HOM05D006257 ORTHO05D007708 7.9e-54 214.5 215 58.1
Gohir.D07G040500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 1.0e-53 214.2 199 59.3
MD02G1029500 Malus domestica HOM05D006257 ORTHO05D007708 1.0e-53 214.2 226 58.0
CiPaw.04G172800 Carya illinoinensis HOM05D006257 ORTHO05D007708 1.4e-53 213.8 229 57.2
Gohir.A07G036500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 1.4e-53 213.8 231 57.1
Lj4g0014254 Lotus japonicus HOM05D006257 ORTHO05D007708 1.4e-53 213.8 197 60.4
Potri.006G067600 Populus trichocarpa HOM05D006257 ORTHO05D007708 1.8e-53 213.4 174 65.5
Gorai.001G043000 Gossypium raimondii HOM05D006257 ORTHO05D007708 2.3e-53 213.0 232 55.2
Ca_06925_v3 Cicer arietinum L. HOM05D006257 ORTHO05D007708 3.0e-53 212.6 215 60.0
Lalb_Chr13g0301741 Lupinus albus HOM05D006257 ORTHO05D007708 5.2e-53 211.8 179 65.4
TPR.G26482 Trifolium pratense HOM05D006257 ORTHO05D007708 5.2e-53 211.8 208 60.6
Glyma.06G224200 Glycine max HOM05D006257 ORTHO05D007708 6.7e-53 211.5 174 64.4
Prupe.7G245400 Prunus persica HOM05D006257 ORTHO05D007708 6.7e-53 211.5 240 55.4
Phvul.003G166300 Phaseolus vulgaris HOM05D006257 ORTHO05D007708 8.8e-53 211.1 174 64.9
Hma1.2p1_0931F.1_g238140 Hydrangea macrophylla HOM05D006257 ORTHO05D007708 1.1e-52 210.7 175 66.3
GSVIVG01015564001 Vitis vinifera HOM05D006257 ORTHO05D007708 1.1e-52 210.7 174 66.1
MELO3C004491.2 Cucumis melo HOM05D006257 ORTHO05D007708 2.0e-52 209.9 210 59.0
ECA234G3820 Erigeron canadensis HOM05D006257 ORTHO05D007708 3.3e-52 209.1 222 57.2
Sabra06G0050300 Salix brachista HOM05D006257 ORTHO05D007708 4.4e-52 208.8 191 60.7
Eucgr.C04235 Eucalyptus grandis HOM05D006257 ORTHO05D007708 5.7e-52 208.4 234 53.8
ClCG11G003160 Citrullus lanatus HOM05D006257 ORTHO05D007708 7.4e-52 208.0 218 56.0
CAN.G551.82 Capsicum annuum HOM05D006257 ORTHO05D007708 9.7e-52 207.6 208 58.7
QL02p088998 Quercus lobata HOM05D006257 ORTHO05D007708 9.7e-52 207.6 218 56.0
Sed0025440 Sechium edule HOM05D006257 ORTHO05D007708 1.3e-51 207.2 239 55.2
TAR625G1128 Trochodendron aralioides HOM05D006257 ORTHO05D007708 1.3e-51 207.2 162 67.9
Lalb_Chr08g0234691 Lupinus albus HOM05D006257 ORTHO05D007708 1.7e-51 206.8 226 57.5
Glyma.04G142800 Glycine max HOM05D006257 ORTHO05D007708 2.8e-51 206.1 218 56.4
TAR636G3495 Trochodendron aralioides HOM05D006257 ORTHO05D007708 2.8e-51 206.1 228 55.7
Lj7A424T23 Lonicera japonica HOM05D006257 ORTHO05D007708 4.8e-51 205.3 176 64.2
MBI04_g29340_MAGBIO Magnolia biondii HOM05D006257 ORTHO05D007708 4.8e-51 205.3 225 57.3
Sabra18G0110100 Salix brachista HOM05D006257 ORTHO05D007708 6.3e-51 204.9 203 58.6
HanXRQChr10g0315681 Helianthus annuus HOM05D006257 ORTHO05D007708 1.8e-50 203.4 225 57.3
Lalb_Chr07g0179081 Lupinus albus HOM05D006257 ORTHO05D007708 9.1e-50 201.1 225 54.7
vmacro20574 Vaccinium macrocarpon HOM05D006257 ORTHO05D007708 9.1e-50 201.1 175 63.4
Sopen12g004590 Solanum pennellii HOM05D006257 ORTHO05D007708 1.6e-49 200.3 201 56.7
Peaxi162Scf00313g00815 Petunia axillaris HOM05D006257 ORTHO05D007708 2.0e-49 199.9 219 55.3
Glyma.17G113300 Glycine max HOM05D006257 ORTHO05D007708 3.5e-49 199.1 180 64.4
TWI34G0058 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 3.5e-49 199.1 147 71.4
CSS0030940 Camellia sinensis var. sinensis HOM05D006257 ORTHO05D007708 4.5e-49 198.7 204 55.9
Solyc12g009600.2 Solanum lycopersicum HOM05D006257 ORTHO05D007708 5.9e-49 198.4 215 54.9
Nitab4.5_0001349g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 1.3e-48 197.2 225 54.7
Nitab4.5_0006319g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 1.7e-48 196.8 226 54.0
MSTRG.26415 Avicennia marina HOM05D006257 ORTHO05D007708 2.2e-48 196.4 222 55.4
Aqoxy7G02265 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 2.9e-48 196.1 197 57.4
DCAR_020916 Daucus carota HOM05D006257 ORTHO05D007708 6.5e-48 194.9 209 56.0
Oeu052179.2 Olea europaea HOM05D006257 ORTHO05D007708 6.5e-48 194.9 215 56.3
PSO210G1348 Papaver somniferum HOM05D006257 ORTHO05D007708 8.5e-48 194.5 226 53.1
PSO210G1954 Papaver somniferum HOM05D006257 ORTHO05D007708 1.9e-47 193.4 226 53.1
Cc06_g08290 Coffea canephora HOM05D006257 ORTHO05D007708 2.5e-47 193.0 237 53.2
RcHm_v2.0_Chr2g0088141 Rosa chinensis HOM05D006257 ORTHO05D007708 9.4e-47 191.0 218 56.4
EL10Ac8g18684 Beta vulgaris HOM05D006257 ORTHO05D007708 1.2e-46 190.7 205 54.6
FAN23G1258 Fragaria x ananassa HOM05D006257 ORTHO05D007708 2.1e-46 189.9 174 63.2
FAN26G0886 Fragaria x ananassa HOM05D006257 ORTHO05D007708 2.7e-46 189.5 174 63.2
Ah.09g225230 Amaranthus hybridus HOM05D006257 ORTHO05D007708 6.1e-46 188.3 178 59.0
ATR0598G180 Amborella trichopoda HOM05D006257 ORTHO05D007708 6.1e-46 188.3 147 68.0
FvH4_1g03010 Fragaria vesca HOM05D006257 ORTHO05D007708 6.1e-46 188.3 174 62.6
FAN19G0162 Fragaria x ananassa HOM05D006257 ORTHO05D007708 6.1e-46 188.3 174 62.6
FAN28G1785 Fragaria x ananassa HOM05D006257 ORTHO05D007708 6.1e-46 188.3 174 62.6
HPP92_024114 Vanilla planifolia HOM05D006257 ORTHO05D007708 6.1e-46 188.3 207 54.6
BcaC03g16142 Brassica carinata HOM05D006257 ORTHO05D007708 8.0e-46 188.0 140 79.3
HPP92_024119 Vanilla planifolia HOM05D006257 ORTHO05D007708 1.0e-45 187.6 145 67.6
Hund09262 Selenicereus undatus HOM05D006257 ORTHO05D007708 1.4e-45 187.2 240 52.1
Lsat_1_v5_gn_5_95081 Lactuca sativa HOM05D006257 ORTHO05D007708 1.8e-45 186.8 206 55.3
TWI63G0502 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 1.8e-45 186.8 244 50.4
unitig_37.g12643 Utricularia gibba HOM05D006257 ORTHO05D007708 2.3e-45 186.4 222 52.3
Os06g0705100 Oryza sativa ssp. japonica HOM05D006257 ORTHO05D007708 3.0e-45 186.0 148 65.5
Migut.K00442 Erythranthe guttata HOM05D006257 ORTHO05D007708 4.0e-45 185.7 230 50.4
CDE07G0641 Ceratophyllum demersum HOM05D006257 ORTHO05D007708 6.7e-45 184.9 222 53.6
AUR62011151 Chenopodium quinoa HOM05D006257 ORTHO05D007708 8.8e-45 184.5 242 50.4
SGA_v2.0_scaffold63G21838 Striga asiatica HOM05D006257 ORTHO05D007708 1.5e-44 183.7 147 67.3
CANSAT11G2152 Cannabis sativa HOM05D006257 ORTHO05D007708 2.0e-44 183.3 134 70.1
Zm00001eb227340 Zea mays HOM05D006257 ORTHO05D007708 1.3e-43 180.6 166 59.6
Haze_25555 Corylus avellana HOM05D006257 ORTHO05D007708 2.2e-43 179.9 223 52.0
AUR62013336 Chenopodium quinoa HOM05D006257 ORTHO05D007708 1.1e-42 177.6 241 49.8
A02p24830 Brassica napus HOM05D006257 ORTHO05D007708 3.1e-42 176.0 111 84.7
BraA02t07471Z Brassica rapa HOM05D007780 ORTHO05D000140 5.0e-40 168.7 111 80.2
Oeu038255.2 Olea europaea HOM05D006257 ORTHO05D007708 5.0e-40 168.7 258 45.3
Nn8g39488 Nelumbo nucifera HOM05D006257 ORTHO05D007708 4.7e-38 162.2 184 54.3
Sc14g0000190 Simmondsia chinensis HOM05D006257 ORTHO05D007708 8.3e-35 151.4 147 58.5
BcaB05g23639 Brassica carinata HOM05D006257 ORTHO05D007708 8.5e-32 141.4 113 77.9
Aqoxy7G03671 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 1.4e-29 134.0 203 47.3
Dinv36505 Davidia involucrata HOM05D006257 ORTHO05D007708 4.0e-29 132.5 158 53.8
AagrBONN_evm.TU.Sc2ySwM_344.2604 Anthoceros agrestis HOM05D006257 ORTHO05D007708 3.4e-28 129.4 144 51.4
Sed0003979 Sechium edule HOM05D006257 ORTHO05D007708 5.7e-28 128.6 200 48.0
SMO111G0154 Selaginella moellendorffii HOM05D006257 ORTHO05D007708 9.8e-28 127.9 145 49.7
Manes.14G133800 Manihot esculenta HOM05D006257 ORTHO05D007708 2.8e-27 126.3 172 47.7
C02p39320 Brassica napus HOM05D006257 ORTHO05D007708 1.4e-26 124.0 75 88.0
Mapoly0099s0035 Marchantia polymorpha HOM05D006257 ORTHO05D007708 7.0e-26 121.7 230 39.1
Psat4g037320 Pisum sativum HOM05D006257 ORTHO05D007708 1.0e-24 117.9 163 47.9
Pp3c8_15020 Physcomitrium patens HOM05D006257 ORTHO05D007708 2.9e-24 116.3 145 46.2
SEGI_32211 Sequoiadendron giganteum HOM05D006257 ORTHO05D007708 2.3e-21 106.7 104 52.9
Mapoly0522s0001 Marchantia polymorpha HOM05D006257 ORTHO05D007708 3.9e-16 89.4 106 47.2
Pp3c24_6770 Physcomitrium patens HOM05D006257 ORTHO05D007708 1.9e-15 87.0 111 45.0
FAN19G1291 Fragaria x ananassa HOM05D006257 ORTHO05D007708 4.3e-07 59.3 65 55.4


User provided reference genes

Program Settings