Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 6.1e-94 347.4 171 100.0
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 4.2e-87 324.7 182 89.6
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 5.5e-87 324.3 182 89.6
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 1.2e-76 290.0 188 80.9
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 1.4e-74 283.1 189 77.8
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 4.1e-74 281.6 189 77.2
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 4.1e-74 281.6 189 77.2
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 9.2e-74 280.4 189 78.8
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 9.2e-74 280.4 189 77.2
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 1.2e-73 280.0 188 78.7
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 1.6e-73 279.6 189 76.7
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 2.7e-73 278.9 188 77.7
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 1.0e-72 276.9 188 76.1
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 3.9e-72 275.0 189 77.2
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 2.8e-70 268.9 189 75.7
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 2.4e-66 255.8 211 65.9
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 9.8e-60 233.8 166 70.5
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.0e-56 223.8 191 62.3
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 6.6e-56 221.1 188 64.4
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 1.1e-55 220.3 187 62.6
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 2.5e-55 219.2 191 62.3
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 4.3e-55 218.4 182 62.6
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 4.3e-55 218.4 189 59.8
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 7.3e-55 217.6 126 80.2
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 1.2e-54 216.9 134 75.4
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 1.2e-54 216.9 198 60.6
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 1.6e-54 216.5 189 59.3
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 3.6e-54 215.3 185 62.2
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 4.7e-54 214.9 189 63.0
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 6.2e-54 214.5 188 62.2
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 8.1e-54 214.2 189 63.0
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 8.1e-54 214.2 172 64.5
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 1.1e-53 213.8 126 78.6
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.4e-53 213.4 188 61.7
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 1.8e-53 213.0 162 68.5
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 2.3e-53 212.6 193 61.7
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 3.1e-53 212.2 124 79.8
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 3.1e-53 212.2 128 76.6
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 4.0e-53 211.8 184 62.5
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 5.2e-53 211.5 190 60.5
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 8.9e-53 210.7 188 58.5
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 8.9e-53 210.7 125 76.8
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 1.2e-52 210.3 168 64.3
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 1.5e-52 209.9 125 76.8
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 2.0e-52 209.5 126 74.6
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 2.6e-52 209.1 126 74.6
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 3.4e-52 208.8 143 67.8
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 3.4e-52 208.8 126 74.6
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 5.8e-52 208.0 150 66.7
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 7.6e-52 207.6 125 75.2
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 7.6e-52 207.6 126 74.6
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 9.9e-52 207.2 132 72.7
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 1.7e-51 206.5 125 74.4
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 1.7e-51 206.5 122 78.7
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 2.2e-51 206.1 168 62.5
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 2.2e-51 206.1 193 57.0
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 2.9e-51 205.7 125 74.4
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 2.9e-51 205.7 126 73.8
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 3.7e-51 205.3 154 66.9
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 4.9e-51 204.9 123 74.0
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 6.4e-51 204.5 168 61.9
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 6.4e-51 204.5 187 57.2
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 6.4e-51 204.5 125 73.6
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 6.4e-51 204.5 216 53.7
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 6.4e-51 204.5 124 74.2
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 8.3e-51 204.1 153 64.7
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 1.1e-50 203.8 177 61.6
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 1.4e-50 203.4 125 76.0
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 1.9e-50 203.0 189 56.1
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 2.4e-50 202.6 142 66.2
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 3.2e-50 202.2 154 63.6
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 3.2e-50 202.2 174 60.9
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 3.2e-50 202.2 137 68.6
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 4.1e-50 201.8 125 73.6
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 9.2e-50 200.7 141 68.8
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 2.1e-49 199.5 170 60.6
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 2.7e-49 199.1 214 55.1
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 3.5e-49 198.7 154 63.6
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 3.5e-49 198.7 171 62.0
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 6.0e-49 198.0 182 56.6
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 1.0e-48 197.2 125 71.2
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 1.7e-48 196.4 193 53.9
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.7e-48 196.4 125 70.4
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.7e-48 196.4 125 70.4
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 2.3e-48 196.1 125 71.2
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 3.9e-48 195.3 167 61.1
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 5.1e-48 194.9 198 53.0
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 1.5e-47 193.4 125 70.4
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 7.3e-47 191.0 117 75.2
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 7.3e-47 191.0 123 66.7
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 1.2e-46 190.3 109 77.1
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 1.6e-46 189.9 143 61.5
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 2.8e-46 189.1 133 68.4
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 3.6e-46 188.7 125 68.0
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 6.2e-46 188.0 111 76.6
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 8.1e-46 187.6 123 67.5
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 1.5e-44 183.3 130 66.9
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 1.7e-43 179.9 123 65.9
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 2.2e-43 179.5 113 73.5
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 2.9e-43 179.1 161 61.5
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 2.9e-43 179.1 112 73.2
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 5.4e-42 174.9 210 50.0
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 9.3e-42 174.1 139 56.8
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 2.1e-41 172.9 116 68.1
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 2.7e-41 172.6 204 49.0
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 7.8e-41 171.0 116 69.8
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 9.6e-39 164.1 93 82.8
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 6.2e-38 161.4 126 60.3
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 1.1e-37 160.6 115 65.2
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 2.4e-37 159.5 128 56.2
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 1.5e-36 156.8 122 64.8
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 9.9e-36 154.1 91 78.0
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 4.6e-33 145.2 141 56.7
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 6.0e-33 144.8 146 58.2
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 3.0e-32 142.5 105 64.8
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 5.1e-32 141.7 98 67.3
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 5.1e-32 141.7 109 61.5
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 2.1e-30 136.3 89 67.4
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 2.8e-30 136.0 84 79.8
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 3.6e-30 135.6 124 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 8.1e-30 134.4 109 59.6
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 1.3e-27 127.1 113 52.2
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 4.9e-27 125.2 73 76.7
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 7.1e-26 121.3 116 49.1
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 1.0e-24 117.5 71 76.1
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 1.3e-22 110.5 97 52.6
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 9.0e-21 104.4 111 45.9
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 8.7e-16 87.8 79 55.7
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 3.3e-15 85.9 111 38.7
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 9.6e-15 84.3 50 76.0
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 6.9e-13 78.2 49 69.4
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 2.9e-11 72.8 229 29.7
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 7.4e-07 58.2 42 61.9
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 1.6e-06 57.0 43 60.5
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 6.3e-06 55.1 34 73.5


User provided reference genes

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