Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 1.4e-157 559.7 308 100.0
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 1.4e-157 559.7 308 100.0
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.3e-155 552.4 308 99.0
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.6e-153 546.2 308 97.7
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 4.0e-152 541.6 309 96.4
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.7e-150 536.2 308 95.5
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 2.3e-128 462.6 309 82.8
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 5.2e-128 461.5 309 82.2
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 4.3e-122 441.8 310 78.7
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 9.5e-122 440.7 312 78.8
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.1e-120 437.2 312 77.9
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 4.4e-119 431.8 308 76.9
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 2.3e-107 392.9 312 71.5
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 6.5e-78 295.0 302 59.6
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 6.3e-65 251.9 301 52.2
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.4e-64 250.8 309 50.5
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 1.4e-64 250.8 297 52.2
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 2.4e-64 250.0 303 52.5
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 6.5e-62 241.9 303 49.8
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 2.5e-61 240.0 315 49.2
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 2.1e-60 236.9 334 48.8
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 4.7e-60 235.7 313 49.5
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 4.7e-60 235.7 310 48.4
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.0e-59 234.6 309 46.6
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.3e-59 233.4 303 49.5
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 6.7e-59 231.9 304 50.3
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.1e-58 231.1 311 50.2
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 3.3e-58 229.6 304 48.7
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 3.3e-58 229.6 310 49.4
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 3.3e-58 229.6 299 51.2
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.7e-58 228.8 314 46.8
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 5.7e-58 228.8 308 47.4
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 9.7e-58 228.0 308 47.7
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 2.2e-57 226.9 308 48.4
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 2.2e-57 226.9 306 46.1
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 8.2e-57 224.9 313 48.9
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.1e-56 224.6 314 46.8
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 1.1e-56 224.6 309 48.2
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 4.1e-56 222.6 311 49.2
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.1e-56 222.6 311 49.2
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 4.1e-56 222.6 309 47.9
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 5.3e-56 222.2 311 49.2
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.2e-55 221.1 311 48.9
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 2.6e-55 219.9 311 46.9
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 4.5e-55 219.2 313 46.6
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 4.5e-55 219.2 310 45.2
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.7e-55 218.4 311 49.2
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 7.7e-55 218.4 309 47.6
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 7.7e-55 218.4 305 47.9
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.9e-54 216.5 300 46.3
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 2.9e-54 216.5 307 44.3
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 2.9e-54 216.5 311 46.0
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.5e-53 214.2 298 48.7
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.5e-53 214.2 306 45.1
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.9e-53 213.8 302 46.0
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 2.5e-53 213.4 306 46.4
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 3.2e-53 213.0 310 45.2
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 5.5e-53 212.2 256 52.3
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.1e-52 210.3 315 46.7
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 3.6e-52 209.5 309 45.3
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 8.0e-52 208.4 316 45.9
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 1.0e-51 208.0 309 46.0
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.0e-51 208.0 305 44.9
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 1.4e-51 207.6 298 46.6
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 2.3e-51 206.8 282 46.1
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 3.0e-51 206.5 301 47.5
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 3.0e-51 206.5 299 44.5
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 4.0e-51 206.1 324 42.9
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 8.8e-51 204.9 306 46.4
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.2e-50 204.5 314 44.6
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 2.0e-50 203.8 254 50.4
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.6e-50 203.4 316 46.5
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 3.3e-50 203.0 304 45.4
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 9.7e-50 201.4 302 42.4
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.3e-49 201.1 314 42.7
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 4.8e-49 199.1 314 43.0
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 2.4e-48 196.8 309 42.7
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 4.1e-48 196.1 291 46.7
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 9.1e-48 194.9 288 43.8
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.6e-47 194.1 314 42.0
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 2.7e-47 193.4 313 42.8
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.7e-47 193.4 280 46.1
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.0e-46 191.4 312 40.1
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.0e-46 191.4 314 40.4
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.3e-46 191.0 307 43.0
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.3e-46 191.0 307 43.0
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.3e-46 191.0 304 44.1
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.7e-46 190.7 299 43.8
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 3.8e-46 189.5 300 41.3
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 5.0e-46 189.1 300 42.7
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 5.0e-46 189.1 301 44.2
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 6.5e-46 188.7 320 43.4
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 8.5e-46 188.3 297 42.4
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.5e-45 187.6 298 40.9
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.9e-45 187.2 315 42.2
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.9e-45 187.2 315 42.2
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 3.2e-45 186.4 298 40.9
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 3.2e-45 186.4 298 40.9
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.4e-45 184.9 314 42.7
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.1e-44 183.7 315 41.6
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 1.8e-43 180.6 297 41.4
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 3.0e-43 179.9 274 44.5
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.2e-42 177.9 267 43.8
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 3.4e-42 176.4 321 42.4
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 4.4e-42 176.0 202 55.9
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 5.7e-42 175.6 297 39.1
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 9.8e-42 174.9 312 41.3
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.7e-41 172.9 291 41.6
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 4.8e-41 172.6 283 42.4
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.1e-40 169.9 240 45.8
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 7.0e-40 168.7 258 44.2
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 2.0e-39 167.2 257 44.0
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 2.9e-38 163.3 287 41.5
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 5.0e-38 162.5 293 40.6
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 9.5e-37 158.3 279 39.8
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 9.5e-37 158.3 293 39.9
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.6e-36 157.5 279 39.8
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 5.2e-35 152.5 292 39.7
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 2.0e-34 150.6 286 40.2
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.4e-32 144.4 217 44.2
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 2.4e-24 117.1 156 47.4
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 5.6e-21 105.9 278 34.5
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.1e-20 104.0 130 50.0
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 4.7e-20 102.8 176 42.0
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 3.5e-15 86.7 257 33.9
C03p36620 Brassica napus HOM05D006030 ORTHO05D007475 1.5e-10 71.2 55 70.9
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.7e-09 67.8 148 36.5
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 1.7e-09 67.8 97 46.4
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-08 65.1 161 33.5
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 2.7e-07 60.5 84 42.9


User provided reference genes

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