Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 1.5e-95 352.8 182 100.0
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 3.8e-94 348.2 183 99.5
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.4e-93 346.3 183 98.9
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 2.7e-92 342.0 183 97.8
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 2.7e-92 342.0 183 97.8
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 6.7e-91 337.4 182 94.5
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 7.7e-87 323.9 182 92.3
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 1.0e-86 323.6 180 92.8
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 6.5e-86 320.9 182 90.1
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 3.2e-85 318.5 181 91.2
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 4.4e-82 308.1 181 87.8
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 6.3e-81 304.3 182 85.2
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 7.7e-79 297.4 182 83.5
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 8.0e-76 287.3 177 79.1
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 3.5e-63 245.4 175 69.1
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 5.9e-63 244.6 177 68.9
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 1.3e-62 243.4 179 69.8
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.7e-62 243.0 178 68.5
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 2.3e-62 242.7 178 66.9
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 2.9e-62 242.3 174 69.0
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 3.8e-62 241.9 178 66.9
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 1.1e-61 240.4 180 67.8
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.1e-61 240.4 181 66.3
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 1.5e-61 240.0 174 67.2
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 2.5e-61 239.2 177 67.2
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 5.6e-61 238.0 175 68.0
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 7.3e-61 237.7 181 65.2
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 9.5e-61 237.3 178 67.4
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 1.2e-60 236.9 178 66.9
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.2e-60 236.9 178 68.5
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 2.8e-60 235.7 180 66.1
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 3.6e-60 235.3 178 66.9
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 3.6e-60 235.3 177 66.1
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 4.7e-60 235.0 177 65.5
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 4.7e-60 235.0 169 70.4
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 8.0e-60 234.2 176 66.5
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 8.0e-60 234.2 174 67.8
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 1.8e-59 233.0 180 66.7
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 1.8e-59 233.0 180 63.9
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 2.3e-59 232.6 178 66.3
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 2.3e-59 232.6 176 65.3
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 3.0e-59 232.3 177 64.4
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 3.0e-59 232.3 175 67.4
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 5.2e-59 231.5 177 63.8
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 5.2e-59 231.5 177 65.5
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 6.8e-59 231.1 179 65.4
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 2.0e-58 229.6 171 66.7
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.0e-58 229.6 181 64.1
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.6e-58 229.2 174 66.7
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 2.6e-58 229.2 173 66.5
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 3.4e-58 228.8 181 65.2
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 7.5e-58 227.6 170 66.5
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.3e-57 226.9 186 62.9
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 1.7e-57 226.5 174 65.5
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 2.2e-57 226.1 192 62.0
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 2.9e-57 225.7 173 65.9
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.7e-57 225.3 173 65.3
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 1.4e-56 223.4 178 63.5
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 1.4e-56 223.4 176 64.2
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.8e-56 223.0 189 59.8
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 2.4e-56 222.6 167 65.9
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 2.4e-56 222.6 173 64.7
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 2.0e-55 219.5 174 63.2
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 2.3e-54 216.1 171 63.2
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 3.0e-54 215.7 170 62.9
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 3.3e-53 212.2 174 60.9
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 5.6e-53 211.5 175 60.6
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 9.5e-53 210.7 172 59.3
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 4.7e-52 208.4 170 62.4
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 6.2e-52 208.0 166 65.1
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.4e-51 206.8 160 64.4
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 2.3e-51 206.1 254 48.8
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 5.2e-51 204.9 180 58.9
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 5.2e-51 204.9 175 59.4
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 6.8e-51 204.5 143 69.9
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.2e-50 203.8 171 62.0
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 1.2e-50 203.8 170 62.9
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 2.6e-50 202.6 141 70.9
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 1.3e-49 200.3 168 63.7
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 2.9e-49 199.1 160 60.0
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.1e-48 197.2 170 57.6
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 1.9e-48 196.4 146 66.4
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 9.2e-48 194.1 143 65.0
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 1.3e-46 190.3 161 57.1
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.7e-46 189.9 149 65.8
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.9e-46 188.7 206 50.5
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 2.5e-45 186.0 164 54.3
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 1.2e-44 183.7 140 65.0
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 2.1e-44 183.0 140 65.0
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 1.1e-43 180.6 178 54.5
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 4.0e-43 178.7 138 65.9
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.2e-42 177.2 138 66.7
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 2.6e-42 176.0 175 54.9
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 3.7e-41 172.2 118 69.5
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.1e-40 170.6 161 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 2.4e-40 169.5 171 46.8
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 7.1e-40 167.9 199 47.7
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 3.5e-39 165.6 161 48.4
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 9.5e-37 157.5 140 60.7
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 5.2e-35 151.8 116 63.8
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 1.5e-34 150.2 141 53.2
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 9.9e-34 147.5 123 61.8
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 2.8e-28 129.4 160 41.9
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.4e-27 126.3 117 54.7
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 2.2e-17 93.2 88 54.5
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 3.2e-16 89.4 59 74.6
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 4.6e-15 85.5 70 60.0
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 2.4e-11 73.2 52 71.2
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.5e-10 70.5 148 29.1
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.8e-09 65.9 39 76.9


User provided reference genes

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