Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.9e-62 242.3 115 100.0
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 6.8e-57 223.8 107 99.1
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 4.8e-34 147.9 90 81.1
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 6.2e-34 147.5 85 84.7
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 6.2e-34 147.5 85 84.7
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 6.2e-34 147.5 85 84.7
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 2.4e-33 145.6 84 84.5
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.4e-33 145.6 84 84.5
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 6.9e-33 144.1 85 82.4
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 6.9e-33 144.1 85 82.4
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-32 143.3 85 82.4
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-32 143.3 85 82.4
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 2.6e-32 142.1 85 82.4
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 2.6e-32 142.1 85 82.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 7.6e-32 140.6 85 78.8
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 7.6e-32 140.6 85 80.0
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.5e-30 134.4 85 77.6
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 3.3e-27 125.2 89 66.3
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 4.3e-27 124.8 89 67.4
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 5.7e-27 124.4 89 66.3
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 1.3e-26 123.2 89 65.2
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.3e-26 123.2 89 62.9
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 3.7e-26 121.7 89 65.2
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.3e-26 120.9 100 57.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.3e-26 120.9 100 57.0
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.3e-26 120.9 90 63.3
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 6.3e-26 120.9 89 65.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 8.2e-26 120.6 89 64.0
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-25 120.2 79 78.5
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.4e-25 119.8 89 64.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 1.4e-25 119.8 89 62.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 1.8e-25 119.4 89 62.9
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.8e-25 119.4 89 64.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 2.4e-25 119.0 89 62.9
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 2.4e-25 119.0 104 56.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 2.4e-25 119.0 104 57.7
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 4.1e-25 118.2 89 62.9
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 5.3e-25 117.9 89 61.8
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 6.9e-25 117.5 89 62.9
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 6.9e-25 117.5 103 57.3
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 6.9e-25 117.5 103 57.3
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 6.9e-25 117.5 89 62.9
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 6.9e-25 117.5 89 62.9
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 6.9e-25 117.5 89 62.9
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.0e-25 117.1 89 61.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 9.0e-25 117.1 90 63.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 9.0e-25 117.1 89 61.8
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 9.0e-25 117.1 89 61.8
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 9.0e-25 117.1 89 61.8
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 1.2e-24 116.7 104 56.7
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.2e-24 116.7 89 65.2
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.2e-24 116.7 89 61.8
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 1.5e-24 116.3 89 61.8
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 2.6e-24 115.5 89 60.7
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.4e-24 115.2 88 59.1
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.4e-24 115.2 88 59.1
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 3.4e-24 115.2 89 61.8
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 3.4e-24 115.2 89 59.6
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 3.4e-24 115.2 88 62.5
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 3.4e-24 115.2 89 59.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 3.4e-24 115.2 90 60.0
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 3.4e-24 115.2 89 60.7
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.5e-24 114.8 89 62.9
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 4.5e-24 114.8 89 60.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 5.9e-24 114.4 89 59.6
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.9e-24 114.4 89 60.7
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 5.9e-24 114.4 89 59.6
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 7.6e-24 114.0 89 61.8
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 7.6e-24 114.0 89 59.6
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 7.6e-24 114.0 89 59.6
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 7.6e-24 114.0 89 61.8
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.0e-23 113.6 89 59.6
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 1.7e-23 112.8 89 59.6
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.7e-23 112.8 89 61.8
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.7e-23 112.8 88 58.0
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.2e-23 112.5 88 60.2
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 3.8e-23 111.7 89 58.4
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 3.8e-23 111.7 89 59.6
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 5.0e-23 111.3 88 59.1
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.0e-23 111.3 89 58.4
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 5.0e-23 111.3 89 60.7
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 8.4e-23 110.5 89 60.7
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 8.4e-23 110.5 89 60.7
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 8.4e-23 110.5 89 58.4
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.1e-22 110.2 89 59.6
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 1.4e-22 109.8 103 54.4
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.4e-22 109.8 103 56.3
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 1.9e-22 109.4 89 57.3
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.5e-22 109.0 87 58.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.2e-22 108.6 80 65.0
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 3.2e-22 108.6 80 65.0
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.2e-22 108.6 80 65.0
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 3.2e-22 108.6 103 55.3
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 3.2e-22 108.6 80 62.5
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 4.2e-22 108.2 89 56.2
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 4.2e-22 108.2 88 58.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 7.2e-22 107.5 80 63.8
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 7.2e-22 107.5 87 57.5
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 7.2e-22 107.5 89 58.4
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.6e-21 106.3 94 51.1
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.6e-21 106.3 78 62.8
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.5e-21 105.1 90 57.8
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 3.5e-21 105.1 82 65.9
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 1.3e-20 103.2 89 52.8
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.1e-20 101.3 78 60.3
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 5.1e-20 101.3 87 51.7
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 6.7e-20 100.9 90 57.8
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.5e-19 99.0 90 56.7
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 5.7e-19 97.8 90 52.2
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 4.8e-18 94.7 110 42.7
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.1e-17 93.6 180 34.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.8e-17 92.8 93 50.5
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.8e-17 92.8 93 51.6
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.8e-17 92.8 93 52.7
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 2.4e-17 92.4 77 57.1
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 2.4e-17 92.4 93 50.5
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 2.4e-17 92.4 93 50.5
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.1e-17 92.0 74 64.9
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-17 92.0 89 48.3
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 5.3e-17 91.3 88 52.3
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 4.5e-16 88.2 80 56.2
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 7.7e-16 87.4 80 52.5
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.9e-15 85.5 80 50.0
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.1e-14 83.6 93 47.3
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.1e-14 83.6 80 50.0
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.1e-14 83.6 80 50.0
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.2e-14 82.0 80 50.0
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 9.4e-14 80.5 80 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 1.2e-13 80.1 80 51.2
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.0e-12 77.0 73 52.1
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.0e-12 75.5 80 47.5
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-11 72.0 36 94.4
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 8.5e-07 57.4 63 50.8


User provided reference genes

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