Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 6.6e-224 780.4 399 100.0
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 5.0e-171 604.7 580 62.6
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.3e-155 553.5 580 60.0
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.7e-153 545.8 592 58.4
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.0e-147 527.3 587 57.1
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.6e-145 520.0 443 70.0
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.8e-141 506.5 452 67.5
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.5e-140 501.9 616 53.7
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 5.9e-140 501.5 616 53.6
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.3e-139 500.4 616 53.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.3e-139 500.4 616 53.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.2e-139 499.6 617 53.6
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.2e-139 499.6 617 53.6
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 8.0e-137 491.1 616 52.3
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 5.2e-136 488.4 452 64.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.9e-132 474.9 616 50.6
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.7e-118 430.3 615 47.8
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 1.2e-116 424.1 615 47.6
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 1.6e-116 423.7 615 47.6
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.3e-115 419.9 615 46.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 2.9e-115 419.5 615 47.2
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 5.2e-112 408.7 616 44.8
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 6.8e-112 408.3 616 45.8
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 6.8e-112 408.3 616 45.5
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 5.8e-111 405.2 616 43.8
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 9.8e-111 404.4 616 45.1
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 4.9e-110 402.1 617 44.6
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.4e-109 400.6 616 44.2
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 4.1e-109 399.1 616 44.6
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 2.0e-108 396.7 621 43.5
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 4.6e-108 395.6 617 44.6
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 6.0e-108 395.2 617 43.8
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 7.8e-108 394.8 608 44.9
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 1.0e-107 394.4 617 43.8
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 1.7e-107 393.7 452 54.0
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.7e-107 393.7 617 42.9
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 3.0e-107 392.9 615 44.1
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 3.9e-107 392.5 452 53.3
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.0e-107 392.1 613 42.9
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 1.9e-106 390.2 620 43.4
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 2.5e-106 389.8 456 54.4
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 3.3e-106 389.4 615 42.8
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 5.6e-106 388.7 610 43.9
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 6.2e-105 385.2 454 52.9
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 1.4e-104 384.0 615 44.1
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.4e-104 384.0 616 43.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.3e-104 383.3 453 52.1
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.2e-104 382.1 616 43.3
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 2.6e-103 379.8 621 43.3
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 2.2e-102 376.7 617 41.8
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 8.3e-102 374.8 618 42.1
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.4e-101 374.0 612 43.8
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 2.4e-101 373.2 618 42.1
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 3.2e-101 372.9 612 43.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 4.1e-101 372.5 614 43.3
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 4.1e-101 372.5 614 42.8
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 5.4e-101 372.1 617 43.1
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 9.2e-101 371.3 614 42.7
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.2e-100 370.9 619 43.9
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.2e-100 370.9 451 51.7
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.2e-100 370.9 617 43.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 1.2e-100 370.9 453 52.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.6e-100 370.5 448 51.1
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 1.6e-100 370.5 617 43.4
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 2.1e-100 370.2 617 43.1
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 2.1e-100 370.2 453 52.3
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 3.5e-100 369.4 616 42.9
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 1.0e-99 367.9 619 42.8
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 1.0e-99 367.9 617 42.3
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 1.3e-99 367.5 451 51.0
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 1.3e-99 367.5 616 41.6
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.7e-99 367.1 467 51.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.7e-99 367.1 453 51.9
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.7e-99 367.1 617 42.9
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.3e-99 366.7 466 50.9
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.9e-99 365.9 608 43.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.1e-99 365.5 453 50.8
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 5.1e-99 365.5 618 42.4
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 5.1e-99 365.5 473 49.7
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 8.6e-99 364.8 453 51.0
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 8.6e-99 364.8 466 50.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.1e-98 364.4 460 48.9
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 1.1e-98 364.4 619 42.5
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 2.5e-98 363.2 591 44.2
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 4.3e-98 362.5 620 42.7
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 7.3e-98 361.7 453 51.7
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.2e-97 360.9 446 50.0
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.2e-97 360.9 602 42.5
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.2e-97 360.9 618 42.9
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 2.1e-97 360.1 656 40.1
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 6.2e-97 358.6 588 42.7
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.8e-96 357.1 453 49.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 6.8e-96 355.1 453 51.2
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 7.6e-95 351.7 613 41.3
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 7.6e-95 351.7 610 41.0
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.3e-94 350.9 616 41.1
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 2.2e-94 350.1 617 41.5
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 5.4e-93 345.5 429 51.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 1.2e-92 344.4 616 40.7
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.7e-92 343.2 433 49.2
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.7e-92 343.2 616 39.6
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 4.6e-92 342.4 713 38.1
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 4.4e-87 325.9 614 40.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.7e-86 323.9 609 39.7
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.3e-83 313.5 615 38.0
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 2.3e-83 313.5 592 40.0
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.6e-81 307.4 454 45.2
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 6.2e-81 305.4 452 44.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 4.9e-78 295.8 587 38.7
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.0e-76 288.9 606 37.6
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 7.9e-76 288.5 427 45.0
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.3e-73 281.2 399 45.6
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.2e-73 278.9 439 41.0
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 8.4e-70 268.5 428 44.2
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.8e-67 260.8 461 41.0
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 7.4e-66 255.4 379 48.3
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.1e-60 237.3 438 39.0
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.7e-60 236.9 446 39.2
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 3.5e-60 236.5 340 48.5
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.0e-59 235.0 310 50.6
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.3e-58 229.6 457 37.0
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.3e-58 229.6 457 37.0
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.5e-55 219.5 454 35.9
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 3.8e-54 216.5 299 50.8
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.6e-49 201.1 465 36.3
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.3e-42 176.8 182 56.0
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.4e-40 171.4 476 33.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-40 171.0 174 57.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.4e-40 170.6 327 38.5
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.1e-40 170.2 176 58.0
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.1e-40 170.2 176 58.0
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 4.1e-40 169.9 174 57.5
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.2e-39 168.3 247 49.0
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 7.7e-39 165.6 267 42.3
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 3.0e-35 153.7 155 58.1
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-32 144.8 139 65.5
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 2.5e-29 134.0 100 66.0
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 5.5e-29 132.9 237 41.4
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 6.7e-27 125.9 75 80.0
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 6.7e-27 125.9 165 51.5
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 9.7e-26 122.1 79 78.5
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.2e-25 119.0 70 75.7
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.6e-23 114.8 69 72.5
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.6e-23 114.8 69 72.5
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 2.7e-20 104.0 576 24.7
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 5.7e-18 96.3 235 32.8
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.8e-17 93.2 305 30.2
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.7e-14 84.7 61 65.6
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.6e-12 78.2 224 30.8
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 2.7e-12 77.4 52 73.1
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.6e-10 70.9 187 30.5
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-09 68.6 38 78.9
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 2.8e-09 67.4 127 37.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 4.1e-08 63.5 62 64.5


User provided reference genes

Program Settings