Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 3.4e-167 591.7 317 100.0
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 7.0e-160 567.4 317 96.5
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 8.5e-158 560.5 318 95.6
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 8.2e-153 543.9 347 87.0
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 1.1e-152 543.5 352 85.8
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 2.4e-152 542.3 319 90.9
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 3.8e-134 481.9 319 83.7
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 1.8e-131 473.0 318 83.3
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 5.7e-130 468.0 322 82.6
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 4.1e-120 435.3 320 75.6
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 3.9e-118 428.7 320 76.6
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 6.8e-115 417.9 322 73.9
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 6.8e-115 417.9 320 76.6
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 3.4e-114 415.6 320 75.6
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 4.3e-109 398.7 319 72.1
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 2.1e-108 396.4 359 67.4
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 7.1e-104 381.3 328 69.2
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 6.6e-94 348.2 295 69.2
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 5.8e-82 308.5 266 72.6
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 2.7e-79 299.7 309 60.5
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 2.8e-76 289.7 317 57.4
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 4.9e-73 278.9 317 55.5
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 3.9e-70 269.2 312 54.8
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.5e-69 267.3 318 54.4
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 1.9e-69 266.9 329 55.0
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 1.3e-68 264.2 328 52.1
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.6e-68 263.8 302 56.0
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 1.6e-68 263.8 328 51.5
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 8.2e-68 261.5 317 52.7
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 8.2e-68 261.5 323 52.3
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 2.4e-67 260.0 314 52.5
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 2.4e-67 260.0 314 52.5
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 4.1e-67 259.2 314 51.9
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 4.5e-66 255.8 306 53.9
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 7.6e-66 255.0 315 51.4
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 1.7e-65 253.8 306 53.6
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 3.8e-65 252.7 317 52.7
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 1.4e-64 250.8 339 51.3
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 1.9e-64 250.4 326 52.1
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 5.5e-64 248.8 294 52.4
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 5.5e-64 248.8 332 51.5
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 9.3e-64 248.1 316 51.6
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 1.0e-62 244.6 316 51.3
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 1.8e-62 243.8 319 48.9
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 3.9e-62 242.7 350 49.1
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 5.1e-62 242.3 321 50.2
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 6.7e-62 241.9 310 50.6
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 8.7e-62 241.5 342 49.7
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 1.5e-61 240.7 332 47.6
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 1.9e-61 240.4 314 49.7
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 1.9e-61 240.4 307 50.8
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 3.3e-61 239.6 301 53.2
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 3.3e-61 239.6 319 49.2
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 5.7e-61 238.8 332 46.4
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 7.4e-61 238.4 322 48.8
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 9.7e-61 238.0 292 53.1
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 1.6e-60 237.3 307 50.2
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 2.2e-60 236.9 338 47.6
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 4.8e-60 235.7 322 49.4
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 8.2e-60 235.0 321 49.2
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 1.4e-59 234.2 336 47.0
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 1.8e-59 233.8 343 46.4
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 5.3e-59 232.3 375 44.5
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 6.9e-59 231.9 322 48.8
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 4.5e-58 229.2 312 48.4
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 2.2e-57 226.9 337 46.3
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 3.8e-57 226.1 216 60.6
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 5.0e-57 225.7 283 52.3
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 8.5e-57 224.9 331 47.7
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 4.2e-56 222.6 316 47.2
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 7.2e-56 221.9 331 46.5
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.2e-55 221.1 269 50.9
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.6e-55 220.7 322 47.8
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 2.1e-55 220.3 287 49.8
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 7.9e-55 218.4 325 48.0
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 1.4e-54 217.6 302 48.7
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 8.8e-54 214.9 319 48.0
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 5.7e-53 212.2 288 51.0
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 7.4e-53 211.8 338 45.6
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 2.8e-52 209.9 350 43.1
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 1.1e-51 208.0 281 48.4
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.1e-51 208.0 319 47.0
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 1.4e-51 207.6 333 43.8
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 2.4e-51 206.8 314 46.5
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 6.9e-51 205.3 280 49.3
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 1.5e-50 204.1 311 47.6
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 1.5e-50 204.1 304 45.4
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 2.0e-50 203.8 328 44.2
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 2.6e-50 203.4 316 46.8
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 4.5e-50 202.6 319 46.4
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 4.5e-50 202.6 322 44.4
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 2.9e-49 199.9 332 44.9
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 6.5e-49 198.7 319 45.5
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 6.5e-49 198.7 319 46.7
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 8.5e-49 198.4 254 50.8
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 1.9e-48 197.2 171 63.7
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 3.9e-46 189.5 309 43.7
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 6.7e-46 188.7 327 45.6
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.1e-45 188.0 319 46.4
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 1.5e-45 187.6 314 43.6
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 9.7e-45 184.9 313 43.8
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 6.3e-44 182.2 330 43.0
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 1.1e-43 181.4 330 43.0
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 1.8e-43 180.6 281 47.7
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.8e-43 180.6 296 46.6
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 3.1e-43 179.9 277 46.6
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 4.1e-43 179.5 342 41.8
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 1.2e-42 177.9 361 38.8
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 1.6e-42 177.6 291 44.0
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 1.6e-42 177.6 490 33.5
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 1.5e-40 171.0 262 46.6
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 2.7e-39 166.8 217 51.2
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 2.6e-37 160.2 300 40.7
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 1.3e-36 157.9 288 41.0
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.7e-36 157.5 321 39.9
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 4.8e-36 156.0 251 44.2
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 4.8e-36 156.0 207 50.7
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 2.4e-35 153.7 305 41.6
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 4.7e-31 139.4 202 48.0
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 1.3e-28 131.3 316 38.9
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 5.4e-27 125.9 111 63.1
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 3.8e-25 119.8 160 46.2
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 1.1e-24 118.2 111 60.4
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 1.6e-23 114.4 125 53.6
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 9.8e-21 105.1 102 57.8
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 9.8e-21 105.1 225 38.7
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 2.8e-20 103.6 285 36.8
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 4.5e-18 96.3 108 52.8
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 5.9e-18 95.9 171 40.9
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 1.1e-16 91.7 79 63.3
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 8.0e-15 85.5 244 33.6
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 7.5e-13 79.0 86 54.7
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 9.8e-13 78.6 208 34.1
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 1.3e-12 78.2 70 60.0
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 3.2e-11 73.6 74 54.1
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 2.7e-10 70.5 212 30.7
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 3.5e-10 70.1 215 28.4
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 3.5e-10 70.1 215 28.4
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 1.1e-06 58.5 278 31.3


User provided reference genes

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