Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 2.1e-103 379.0 190 100.0
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 2.1e-103 379.0 190 100.0
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 1.3e-100 369.8 203 93.6
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 3.8e-97 358.2 198 91.9
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 6.6e-97 357.5 185 95.7
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 1.1e-96 356.7 198 91.4
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 1.8e-91 339.3 185 90.3
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 8.6e-89 330.5 185 88.6
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 9.5e-88 327.0 185 87.0
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 1.8e-86 322.8 186 87.1
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 8.9e-86 320.5 185 85.9
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 2.6e-85 318.9 185 85.9
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 4.4e-85 318.2 186 84.9
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 1.8e-78 296.2 190 79.5
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 5.2e-78 294.7 192 79.2
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 8.4e-68 260.8 186 71.0
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 4.1e-67 258.5 187 70.6
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 1.2e-66 256.9 191 70.7
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 2.1e-66 256.1 192 68.8
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 2.1e-66 256.1 192 68.2
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 2.7e-66 255.8 186 69.4
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 3.5e-66 255.4 193 68.4
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 4.6e-66 255.0 143 87.4
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 1.0e-65 253.8 189 68.8
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 1.7e-65 253.1 192 67.7
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 1.7e-65 253.1 194 70.6
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 3.9e-65 251.9 239 60.3
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 6.6e-65 251.1 189 66.7
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 1.1e-64 250.4 193 67.9
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 1.9e-64 249.6 191 68.6
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 3.3e-64 248.8 189 67.7
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 2.1e-63 246.1 207 64.3
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 3.6e-63 245.4 186 68.8
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 4.7e-63 245.0 186 69.4
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 1.4e-62 243.4 184 67.4
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 1.8e-62 243.0 185 66.5
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.8e-62 243.0 191 67.0
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 2.4e-62 242.7 195 66.2
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 2.4e-62 242.7 191 66.5
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 2.4e-62 242.7 190 67.9
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 3.1e-62 242.3 195 64.1
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 8.9e-62 240.7 185 64.3
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 8.9e-62 240.7 193 64.2
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 1.2e-61 240.4 187 66.3
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 3.4e-61 238.8 189 65.1
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 3.4e-61 238.8 191 66.5
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 3.4e-61 238.8 196 63.8
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 1.7e-60 236.5 193 63.2
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 1.7e-60 236.5 184 66.8
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 2.2e-60 236.1 184 65.2
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 3.8e-60 235.3 193 63.7
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 3.8e-60 235.3 189 65.6
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 6.4e-60 234.6 205 59.0
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 1.9e-59 233.0 182 62.6
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 2.4e-59 232.6 190 64.7
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 7.1e-59 231.1 188 61.7
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 2.1e-58 229.6 195 62.6
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 4.6e-58 228.4 185 62.7
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 6.0e-58 228.0 186 65.6
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 1.7e-57 226.5 190 59.5
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 5.1e-57 224.9 209 57.4
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 8.7e-57 224.2 185 62.2
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 8.7e-57 224.2 192 58.9
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 1.1e-56 223.8 190 62.1
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 1.5e-56 223.4 124 86.3
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 5.6e-56 221.5 188 62.2
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 5.6e-56 221.5 188 61.7
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 9.6e-56 220.7 193 60.1
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 1.3e-55 220.3 187 64.2
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 5.3e-54 214.9 185 57.3
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 3.4e-53 212.2 189 56.6
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 2.2e-52 209.5 182 58.8
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 2.9e-52 209.1 163 64.4
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 2.9e-52 209.1 183 59.6
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 3.2e-51 205.7 182 59.9
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 5.4e-51 204.9 184 60.3
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 1.2e-50 203.8 187 61.0
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.1e-50 203.0 212 55.7
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 2.1e-50 203.0 171 62.0
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 1.0e-49 200.7 125 77.6
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 1.0e-49 200.7 186 58.1
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.3e-49 199.5 211 55.0
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 1.6e-47 193.4 188 56.9
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 2.1e-47 193.0 134 69.4
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 2.1e-47 193.0 203 50.2
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 2.8e-47 192.6 164 60.4
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 4.8e-47 191.8 143 70.6
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.5e-45 186.8 145 66.9
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 2.0e-45 186.4 193 54.9
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 9.9e-45 184.1 121 72.7
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 1.3e-44 183.7 104 82.7
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 7.9e-42 174.5 123 62.6
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 2.3e-41 172.9 136 61.8
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 5.6e-40 168.3 146 55.5
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 7.4e-40 167.9 279 38.7
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 2.5e-35 152.9 117 67.5
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 4.2e-35 152.1 255 38.8
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 1.2e-34 150.6 139 53.2
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 2.7e-34 149.4 136 55.1
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 3.3e-32 142.5 162 50.6
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 7.4e-32 141.4 83 86.7
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 1.1e-30 137.5 102 69.6
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 1.9e-24 116.7 107 61.7
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.8e-22 110.2 188 39.9
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 4.2e-19 99.0 83 61.4
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 4.6e-18 95.5 65 72.3
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 1.8e-17 93.6 142 34.5
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 3.0e-17 92.8 88 54.5
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 3.0e-17 92.8 75 66.7
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 8.5e-12 74.7 67 56.7
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 3.6e-10 69.3 112 39.3
Hund18476 Selenicereus undatus HOM05D007131 ORTHO05D009026 8.8e-09 64.7 130 34.6
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 2.2e-07 60.1 143 28.7
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 7.0e-06 55.1 101 31.7
COL.COLO4_17651 Corchorus olitorius HOM05D002397 ORTHO05D002667 7.0e-06 55.1 146 28.1
Gohir.A12G046800 Gossypium hirsutum HOM05D002397 ORTHO05D002667 7.0e-06 55.1 130 28.5
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 9.1e-06 54.7 161 26.1
PGR004G1811 Punica granatum HOM05D002397 ORTHO05D002667 9.1e-06 54.7 104 28.8


User provided reference genes

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