Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 2.4e-67 258.8 143 100.0
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 2.4e-67 258.8 143 100.0
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 2.4e-67 258.8 143 100.0
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 7.2e-64 247.3 143 97.9
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 7.0e-59 230.7 146 90.4
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 5.9e-58 227.6 143 92.3
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 5.9e-58 227.6 147 89.1
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 1.3e-57 226.5 146 89.0
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 2.2e-57 225.7 143 91.6
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 2.9e-57 225.3 146 91.1
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 5.0e-57 224.6 143 91.6
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 4.2e-56 221.5 147 88.4
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 5.5e-56 221.1 145 91.0
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 5.5e-56 221.1 145 91.0
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 1.0e-54 216.9 148 88.5
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 1.0e-54 216.9 145 88.3
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 1.8e-54 216.1 140 87.9
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 3.0e-54 215.3 148 87.8
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 2.5e-48 195.7 140 82.1
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 5.9e-42 174.5 110 89.1
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 6.1e-39 164.5 178 64.6
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 5.4e-35 151.4 153 66.7
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 4.7e-31 138.3 143 63.6
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 2.0e-29 132.9 151 58.3
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 3.4e-29 132.1 138 59.4
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 1.3e-28 130.2 149 57.0
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.3e-28 130.2 150 58.0
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.1e-27 127.1 152 53.9
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 1.4e-27 126.7 146 58.9
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 1.4e-27 126.7 151 56.3
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.4e-27 126.7 151 56.3
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.4e-27 126.7 151 56.3
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.4e-27 126.7 151 56.3
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 1.4e-27 126.7 155 54.2
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 2.4e-27 125.9 151 54.3
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.1e-27 125.2 147 55.1
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 5.4e-27 124.8 148 54.1
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 7.0e-27 124.4 149 57.0
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 1.2e-26 123.6 156 56.4
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 1.6e-26 123.2 142 56.3
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 1.6e-26 123.2 155 54.2
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 3.5e-26 122.1 145 56.6
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 3.5e-26 122.1 148 52.7
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 3.5e-26 122.1 137 58.4
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 4.6e-26 121.7 138 55.8
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 7.8e-26 120.9 142 55.6
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 1.0e-25 120.6 75 86.7
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 1.0e-25 120.6 152 55.9
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.0e-25 120.6 150 55.3
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 1.3e-25 120.2 148 56.1
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 1.7e-25 119.8 141 55.3
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 1.7e-25 119.8 117 59.8
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 3.0e-25 119.0 167 50.9
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 3.0e-25 119.0 136 55.1
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 3.9e-25 118.6 152 51.3
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 3.9e-25 118.6 151 54.3
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 5.0e-25 118.2 145 53.1
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 8.6e-25 117.5 144 53.5
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 1.5e-24 116.7 126 58.7
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 2.5e-24 115.9 152 55.3
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 3.3e-24 115.5 136 53.7
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 4.3e-24 115.2 148 52.7
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 5.6e-24 114.8 160 51.9
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 5.6e-24 114.8 112 61.6
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 7.3e-24 114.4 146 52.1
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 7.3e-24 114.4 146 54.1
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 9.5e-24 114.0 145 53.1
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.6e-23 113.2 143 51.7
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 2.1e-23 112.8 140 51.4
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 2.8e-23 112.5 94 67.0
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 2.8e-23 112.5 145 50.3
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 2.8e-23 112.5 130 57.7
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 2.8e-23 112.5 122 57.4
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 3.6e-23 112.1 150 51.3
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 3.6e-23 112.1 142 54.9
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 3.6e-23 112.1 118 55.1
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 3.6e-23 112.1 147 53.1
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 3.6e-23 112.1 108 62.0
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 3.6e-23 112.1 143 53.8
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 4.7e-23 111.7 149 51.0
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 4.7e-23 111.7 141 52.5
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 6.2e-23 111.3 144 51.4
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 6.2e-23 111.3 140 50.0
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 8.0e-23 110.9 134 53.7
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 8.0e-23 110.9 141 51.8
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 1.1e-22 110.5 92 64.1
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 1.1e-22 110.5 110 62.7
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 1.4e-22 110.2 152 50.0
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.4e-22 110.2 123 51.2
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 1.8e-22 109.8 91 72.5
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 1.8e-22 109.8 151 49.7
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 1.8e-22 109.8 151 53.6
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.8e-22 109.8 129 55.0
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 2.3e-22 109.4 127 55.1
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 2.3e-22 109.4 144 52.8
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 3.1e-22 109.0 148 52.0
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 5.2e-22 108.2 139 48.9
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 5.2e-22 108.2 94 61.7
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 5.2e-22 108.2 132 51.5
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.2e-21 107.1 139 49.6
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.2e-21 107.1 130 54.6
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 1.5e-21 106.7 144 54.2
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 2.6e-21 105.9 113 60.2
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 2.6e-21 105.9 145 53.1
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 2.6e-21 105.9 119 59.7
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 2.6e-21 105.9 140 50.7
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 3.4e-21 105.5 181 44.8
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 4.4e-21 105.1 132 53.8
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 5.8e-21 104.8 142 48.6
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 5.8e-21 104.8 89 65.2
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 7.5e-21 104.4 132 50.8
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 9.8e-21 104.0 143 49.0
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 9.8e-21 104.0 125 52.0
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 9.8e-21 104.0 95 65.3
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.3e-20 103.6 119 56.3
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 1.7e-20 103.2 132 51.5
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 2.2e-20 102.8 141 48.9
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 2.2e-20 102.8 142 50.0
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 2.9e-20 102.4 133 51.1
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 6.4e-20 101.3 152 46.1
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 8.3e-20 100.9 92 62.0
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 1.1e-19 100.5 104 61.5
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 2.4e-19 99.4 146 47.9
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 2.4e-19 99.4 142 49.3
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 4.1e-19 98.6 142 50.0
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 4.1e-19 98.6 132 47.7
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 5.4e-19 98.2 144 50.7
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 5.4e-19 98.2 109 56.0
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 7.0e-19 97.8 139 49.6
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 7.0e-19 97.8 154 46.8
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 2.1e-18 96.3 149 48.3
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 2.1e-18 96.3 93 61.3
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 4.6e-18 95.1 94 61.7
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 6.0e-18 94.7 134 44.8
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.0e-17 94.0 94 59.6
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.0e-17 94.0 148 45.3
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 1.0e-17 94.0 107 52.3
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 3.9e-17 92.0 110 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 5.0e-17 91.7 62 79.0
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 8.6e-17 90.9 76 60.5
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 8.6e-17 90.9 103 58.3
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 8.6e-17 90.9 151 46.4
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 1.9e-16 89.7 119 47.9
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 3.3e-16 89.0 81 60.5
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 3.3e-16 89.0 93 54.8
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 5.6e-16 88.2 100 54.0
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 1.2e-15 87.0 98 53.1
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 1.6e-15 86.7 152 42.1
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 2.1e-15 86.3 86 59.3
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 2.8e-15 85.9 171 39.8
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 4.7e-15 85.1 134 41.0
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 4.7e-15 85.1 94 57.4
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 6.2e-15 84.7 98 51.0
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 8.1e-15 84.3 193 38.3
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 3.1e-14 82.4 82 53.7
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 3.1e-14 82.4 106 51.9
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 3.1e-14 82.4 47 87.2
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 4.0e-14 82.0 84 54.8
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 8.9e-14 80.9 57 68.4
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 3.0e-09 65.9 41 78.0
C04p55220 Brassica napus HOM05D004404 ORTHO05D005070 6.6e-09 64.7 73 57.5
BolC4t27061H Brassica oleracea HOM05D000230 ORTHO05D005070 6.6e-09 64.7 73 57.5
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 6.2e-07 58.2 104 36.5
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 2.4e-06 56.2 69 43.5
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 2.4e-06 56.2 87 41.4
PRCOL_00005429 Prasinoderma coloniale HOM05D004404 ORTHO05D005070 4.0e-06 55.5 62 54.8
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 4.0e-06 55.5 148 32.4
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 5.2e-06 55.1 101 34.7
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 5.2e-06 55.1 87 39.1
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 6.8e-06 54.7 61 44.3
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 6.8e-06 54.7 77 39.0
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.8e-06 54.7 95 45.3
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 8.9e-06 54.3 60 41.7


User provided reference genes

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