Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 9.7e-104 380.2 195 100.0
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 2.9e-100 368.6 195 97.9
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 8.5e-100 367.1 195 97.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 4.7e-98 361.3 195 96.4
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.4e-97 359.8 195 95.9
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.3e-89 332.4 195 88.7
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.9e-83 312.8 197 81.2
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 2.0e-77 292.7 198 75.8
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 4.5e-77 291.6 197 76.6
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 9.5e-75 283.9 197 74.1
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.4e-73 280.0 195 75.4
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 3.4e-72 275.4 190 70.5
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.7e-72 274.6 196 74.0
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.3e-65 252.7 197 67.0
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 6.6e-60 234.6 194 62.9
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.9e-59 233.0 197 63.5
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.9e-59 233.0 197 63.5
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 9.5e-59 230.7 197 62.9
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 2.8e-58 229.2 200 61.0
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.4e-57 226.9 198 62.1
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 8.9e-57 224.2 197 60.4
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 8.9e-57 224.2 197 59.4
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.5e-56 223.4 197 59.9
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 5.8e-56 221.5 194 61.9
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 7.5e-56 221.1 198 60.6
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 9.8e-56 220.7 198 59.6
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.3e-55 220.3 199 59.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.7e-55 218.8 200 58.5
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.9e-55 218.4 204 58.8
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-54 217.2 197 58.9
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.9e-54 216.5 193 58.5
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.9e-54 216.5 199 60.8
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 2.4e-54 216.1 204 57.8
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 4.1e-54 215.3 197 58.4
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 4.1e-54 215.3 197 57.9
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 5.4e-54 214.9 197 57.4
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.4e-54 214.9 197 58.4
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.2e-53 213.8 197 56.3
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 3.5e-53 212.2 197 57.4
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.6e-53 211.8 204 56.9
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 6.0e-53 211.5 199 57.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 6.0e-53 211.5 200 58.5
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 6.0e-53 211.5 197 57.9
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 6.0e-53 211.5 197 56.9
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 7.8e-53 211.1 201 55.2
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.3e-52 210.3 196 57.1
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.0e-52 209.1 198 57.1
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 5.0e-52 208.4 200 57.0
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.0e-52 208.4 197 57.4
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 3.3e-51 205.7 209 55.5
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 4.3e-51 205.3 198 56.6
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 4.3e-51 205.3 195 55.4
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 5.6e-51 204.9 191 57.6
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 7.3e-51 204.5 199 55.8
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.2e-50 203.8 198 54.5
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.2e-50 203.8 200 57.0
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.6e-50 203.4 196 56.1
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.8e-50 202.6 196 55.6
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 2.8e-50 202.6 202 55.9
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 3.6e-50 202.2 200 54.5
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.7e-50 201.8 197 56.3
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.7e-50 201.8 192 56.8
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 4.7e-50 201.8 192 57.3
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 6.2e-50 201.4 198 56.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.1e-50 201.1 198 53.5
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 1.1e-49 200.7 197 53.3
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.4e-49 200.3 197 56.3
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 2.3e-49 199.5 197 53.8
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 3.1e-49 199.1 198 54.5
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 3.1e-49 199.1 184 55.4
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 5.2e-49 198.4 198 53.0
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 6.8e-49 198.0 195 55.4
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 8.9e-49 197.6 194 56.7
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 8.9e-49 197.6 199 56.3
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.2e-48 197.2 191 55.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.0e-48 196.4 193 54.4
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 3.4e-48 195.7 193 54.9
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 3.4e-48 195.7 207 53.1
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 9.9e-48 194.1 198 52.0
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 9.9e-48 194.1 198 53.0
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.3e-47 193.7 176 56.2
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.3e-47 193.7 198 51.0
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.7e-47 193.4 189 54.0
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.7e-47 193.4 211 51.7
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.9e-47 192.6 197 52.3
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.9e-47 192.6 198 52.0
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.4e-46 190.3 212 51.9
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.4e-46 189.5 206 51.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.2e-46 189.1 206 51.5
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 4.1e-46 188.7 171 58.5
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 5.4e-46 188.3 211 52.1
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 9.2e-46 187.6 187 56.1
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.5e-45 185.7 197 58.4
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 4.6e-45 185.3 198 49.5
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 6.0e-45 184.9 187 52.9
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.7e-44 183.3 194 52.1
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 2.3e-44 183.0 187 52.4
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 3.0e-44 182.6 206 50.0
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 3.9e-44 182.2 211 49.8
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 6.6e-44 181.4 199 51.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.5e-43 179.5 196 54.6
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 4.3e-43 178.7 189 54.0
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.6e-42 176.8 199 47.7
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.1e-42 176.4 185 53.5
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 2.8e-42 176.0 198 51.5
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.4e-41 173.7 178 52.8
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.4e-41 173.7 194 53.6
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.8e-41 171.4 152 59.9
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 5.8e-40 168.3 198 52.0
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.4e-38 163.7 116 75.9
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.4e-38 163.7 291 37.8
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.9e-38 163.3 197 50.8
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 2.4e-38 162.9 116 76.7
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.2e-37 160.6 199 49.2
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.9e-36 155.6 180 51.1
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.9e-36 155.6 137 57.7
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 8.6e-36 154.5 160 51.2
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.5e-35 153.7 197 46.7
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.9e-35 153.3 158 53.2
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 2.5e-35 152.9 262 38.2
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 7.3e-35 151.4 174 44.8
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 9.6e-35 151.0 194 50.0
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.7e-34 148.7 197 48.7
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 6.9e-33 144.8 134 53.0
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 9.0e-33 144.4 192 43.8
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.2e-32 144.1 195 45.1
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.2e-32 144.1 167 47.9
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 1.5e-32 143.7 177 46.3
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.7e-31 140.2 199 42.7
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 7.1e-30 134.8 153 47.1
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 6.6e-28 128.3 101 56.4
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 1.6e-26 123.6 130 57.7
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 9.0e-25 117.9 146 43.2
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.6e-24 116.3 126 48.4
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.3e-23 114.0 122 44.3
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-21 107.5 99 55.6
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.6e-21 105.5 182 40.7
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.7e-20 101.7 98 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.3e-18 97.4 127 42.5
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 9.0e-17 91.3 156 37.2
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 8.4e-15 84.7 125 39.2
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 8.4e-15 84.7 99 50.5
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.4e-14 83.2 100 47.0
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 9.3e-14 81.3 125 38.4
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.7e-13 79.7 96 46.9
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.0e-12 77.8 117 44.4
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 3.0e-12 76.3 191 34.0
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 5.3e-09 65.5 56 62.5
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 6.9e-09 65.1 103 44.7
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 6.9e-09 65.1 65 49.2
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.0e-08 63.5 77 50.6
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 5.8e-08 62.0 65 47.7
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 6.5e-07 58.5 92 39.1
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.4e-07 58.2 99 40.4
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 8.4e-07 58.2 124 32.3
AL7G43980 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 5.5e-06 55.5 44 68.2


User provided reference genes

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