Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23682 Brassica carinata HOM05D002553 ORTHO05D002767 4.2e-127 458.0 225 100.0
BcaC04g23681 Brassica carinata HOM05D002553 ORTHO05D002767 1.1e-95 353.6 180 97.2
A09p05260 Brassica napus HOM05D002553 ORTHO05D002767 8.9e-93 344.0 180 95.0
BraA09t36165Z Brassica rapa HOM05D002553 ORTHO05D002767 1.0e-88 330.5 189 87.3
C09p05740 Brassica napus HOM05D002553 ORTHO05D002767 8.3e-83 310.8 180 88.9
BolC9t53501H Brassica oleracea HOM05D002553 ORTHO05D002767 8.3e-83 310.8 180 88.9
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 1.6e-78 296.6 189 75.1
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 6.8e-77 291.2 186 75.3
BcaNung02463 Brassica carinata HOM05D002553 ORTHO05D002767 1.2e-76 290.4 180 76.1
BcaNung04368 Brassica carinata HOM05D002553 ORTHO05D002767 1.2e-76 290.4 180 76.7
AL6G39600 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 2.6e-76 289.3 180 76.7
Carub.0006s2513 Capsella rubella HOM05D002553 ORTHO05D002767 9.9e-76 287.3 180 75.6
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 1.7e-75 286.6 192 71.4
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 2.2e-75 286.2 186 73.1
BNapus_Darmor_BZH_scaffold_114p00250 Brassica napus HOM05D002553 ORTHO05D002767 3.7e-75 285.4 179 76.0
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 6.4e-75 284.6 186 73.1
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 6.4e-75 284.6 186 73.1
CARHR186010 Cardamine hirsuta HOM05D002553 ORTHO05D002767 1.1e-74 283.9 180 75.6
BolC1t05708H Brassica oleracea HOM05D002553 ORTHO05D002767 1.4e-74 283.5 179 74.9
Thhalv10020427m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 2.4e-74 282.7 179 75.4
CARHR079530 Cardamine hirsuta HOM05D002553 ORTHO05D002767 1.2e-73 280.4 179 74.9
Aa31LG5G15560 Aethionema arabicum HOM05D002553 ORTHO05D002767 3.5e-73 278.9 179 74.9
AT3G05190 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 3.5e-73 278.9 179 74.9
AL3G15610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 7.8e-73 277.7 179 74.3
Sp3g04040 Schrenkiella parvula HOM05D002553 ORTHO05D002767 1.7e-72 276.6 178 74.2
THA.LOC104802808 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.7e-72 276.6 179 73.7
Carub.0003s0444 Capsella rubella HOM05D002553 ORTHO05D002767 5.1e-72 275.0 179 73.2
Dinv22901 Davidia involucrata HOM05D002553 ORTHO05D002767 1.8e-69 266.5 180 70.0
Nn4g26152 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.8e-69 266.5 183 67.8
Thecc.05G308000 Theobroma cacao HOM05D002553 ORTHO05D002767 4.0e-69 265.4 184 67.9
Haze_04233 Corylus avellana HOM05D002553 ORTHO05D002767 5.2e-69 265.0 210 61.9
PGR083G1620 Punica granatum HOM05D002553 ORTHO05D002767 1.2e-68 263.8 180 69.4
Dinv23976 Davidia involucrata HOM05D002553 ORTHO05D002767 1.5e-68 263.5 180 69.4
Cpa.g.sc48.14 Carica papaya HOM05D002553 ORTHO05D002767 2.6e-68 262.7 187 66.8
TAR362G0623 Trochodendron aralioides HOM05D002553 ORTHO05D002767 2.6e-68 262.7 180 68.9
Atru.chr2.475 Acer truncatum HOM05D002553 ORTHO05D002767 4.4e-68 261.9 180 67.2
Eucgr.B02001 Eucalyptus grandis HOM05D002553 ORTHO05D002767 4.4e-68 261.9 178 68.0
QL03p004498 Quercus lobata HOM05D002553 ORTHO05D002767 4.4e-68 261.9 180 67.8
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 5.8e-68 261.5 180 68.3
TPR.G2739 Trifolium pratense HOM05D002553 ORTHO05D002767 2.2e-67 259.6 179 67.0
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 2.9e-67 259.2 187 64.7
Aqoxy5G00545 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 3.8e-67 258.8 180 66.7
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 4.9e-67 258.5 180 67.8
MD04G1209000 Malus domestica HOM05D002553 ORTHO05D002767 4.9e-67 258.5 182 65.9
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 6.4e-67 258.1 179 68.7
COL.COLO4_13515 Corchorus olitorius HOM05D002553 ORTHO05D002767 6.4e-67 258.1 187 63.6
PSO210G1325 Papaver somniferum HOM05D002553 ORTHO05D002767 6.4e-67 258.1 180 67.8
Hma1.2p1_0666F.1_g199470 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 8.4e-67 257.7 180 67.8
TWI12G0069 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 8.4e-67 257.7 180 65.6
Glyma.19G237000 Glycine max HOM05D002553 ORTHO05D002767 2.4e-66 256.1 185 65.9
Gorai.013G123700 Gossypium raimondii HOM05D002553 ORTHO05D002767 2.4e-66 256.1 187 63.6
Medtr1g082470 Medicago truncatula HOM05D002553 ORTHO05D002767 2.4e-66 256.1 179 65.9
AUR62000869 Chenopodium quinoa HOM05D002553 ORTHO05D002767 3.2e-66 255.8 182 65.9
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 3.2e-66 255.8 183 63.9
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 3.2e-66 255.8 183 66.1
CiPaw.07G014800 Carya illinoinensis HOM05D002553 ORTHO05D002767 4.2e-66 255.4 180 67.2
Psat6g149240 Pisum sativum HOM05D002553 ORTHO05D002767 4.2e-66 255.4 179 67.6
vmacro19641 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 4.2e-66 255.4 184 65.8
BcaB04g21368 Brassica carinata HOM05D002553 ORTHO05D002767 5.4e-66 255.0 163 74.8
Phvul.006G093911 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 7.1e-66 254.6 187 65.2
TAR636G3134 Trochodendron aralioides HOM05D002553 ORTHO05D002767 7.1e-66 254.6 180 65.0
ECA247G0575 Erigeron canadensis HOM05D002553 ORTHO05D002767 9.3e-66 254.2 179 67.0
Gohir.D13G110400 Gossypium hirsutum HOM05D002553 ORTHO05D002767 9.3e-66 254.2 187 63.1
Solyc01g098700.4 Solanum lycopersicum HOM05D002553 ORTHO05D002767 9.3e-66 254.2 180 66.1
Lalb_Chr18g0045531 Lupinus albus HOM05D002553 ORTHO05D002767 1.2e-65 253.8 178 67.4
Lj5g0009152 Lotus japonicus HOM05D002553 ORTHO05D002767 1.6e-65 253.4 181 65.2
Hund07047 Selenicereus undatus HOM05D002553 ORTHO05D002767 1.6e-65 253.4 192 63.0
CAN.G1134.23 Capsicum annuum HOM05D002553 ORTHO05D002767 2.1e-65 253.1 185 63.8
Potri.005G039100 Populus trichocarpa HOM05D002553 ORTHO05D002767 2.1e-65 253.1 180 66.7
Zm00001eb017520 Zea mays HOM05D002553 ORTHO05D002767 2.1e-65 253.1 183 64.5
Sc09g0003340 Simmondsia chinensis HOM05D002553 ORTHO05D002767 3.5e-65 252.3 183 65.0
VMungo0540G1597 Vigna mungo HOM05D002553 ORTHO05D002767 3.5e-65 252.3 185 65.9
Cc02_g32710 Coffea canephora HOM05D002553 ORTHO05D002767 4.6e-65 251.9 183 65.6
Glyma.03G240100 Glycine max HOM05D002553 ORTHO05D002767 4.6e-65 251.9 185 64.9
Prupe.6G330000 Prunus persica HOM05D002553 ORTHO05D002767 4.6e-65 251.9 180 67.2
Peaxi162Scf00434g00216 Petunia axillaris HOM05D002553 ORTHO05D002767 6.0e-65 251.5 201 62.2
Lj9C682T7 Lonicera japonica HOM05D002553 ORTHO05D002767 7.8e-65 251.1 184 63.6
AUR62005107 Chenopodium quinoa HOM05D002553 ORTHO05D002767 1.0e-64 250.8 182 65.9
PGSC0003DMG401028577 Solanum tuberosum HOM05D002553 ORTHO05D002767 1.0e-64 250.8 180 66.1
HanXRQChr02g0037091 Helianthus annuus HOM05D002553 ORTHO05D002767 1.3e-64 250.4 179 67.6
FvH4_6g05350 Fragaria vesca HOM05D002553 ORTHO05D002767 2.3e-64 249.6 180 66.1
Rhsim05G0144300 Rhododendron simsii HOM05D002553 ORTHO05D002767 2.3e-64 249.6 183 63.4
Ca_10093_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 5.1e-64 248.4 179 64.2
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.6e-64 248.1 184 64.7
Lsat_1_v5_gn_1_25020 Lactuca sativa HOM05D002553 ORTHO05D002767 6.6e-64 248.1 179 66.5
Sopen01g042240 Solanum pennellii HOM05D002553 ORTHO05D002767 6.6e-64 248.1 180 64.4
Migut.B01190 Erythranthe guttata HOM05D002553 ORTHO05D002767 8.7e-64 247.7 180 64.4
FAN09G0499 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.1e-63 247.3 186 64.0
FAN14G5684 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.5e-63 246.9 180 65.6
CANSAT54G1986 Cannabis sativa HOM05D002553 ORTHO05D002767 1.9e-63 246.5 180 63.3
Medtr1g083370 Medicago truncatula HOM05D002553 ORTHO05D002767 2.5e-63 246.1 179 64.8
Glyma.10G156850 Glycine max HOM05D002553 ORTHO05D002767 4.3e-63 245.4 179 64.8
ATR0626G263 Amborella trichopoda HOM05D002553 ORTHO05D002767 5.6e-63 245.0 184 60.9
Ah.06g190110 Amaranthus hybridus HOM05D002553 ORTHO05D002767 7.3e-63 244.6 182 62.6
CsaV3_2G004990 Cucumis sativus L. HOM05D002553 ORTHO05D002767 1.3e-62 243.8 180 63.3
RcHm_v2.0_Chr3g0454121 Rosa chinensis HOM05D002553 ORTHO05D002767 1.3e-62 243.8 181 64.6
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 1.4e-61 240.4 193 57.0
MELO3C004297.2 Cucumis melo HOM05D002553 ORTHO05D002767 1.8e-61 240.0 182 61.0
MSTRG.16977 Avicennia marina HOM05D002553 ORTHO05D002767 4.0e-61 238.8 184 62.0
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 4.0e-61 238.8 211 55.5
Nitab4.5_0004271g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 4.4e-60 235.3 180 63.3
arahy.Tifrunner.gnm1.ann1.0VD1AP Arachis hypogaea HOM05D002553 ORTHO05D002767 5.8e-60 235.0 182 63.7
Nitab4.5_0006809g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 4.9e-59 231.9 180 62.2
SGA_v2.0_scaffold43G16279 Striga asiatica HOM05D002553 ORTHO05D002767 1.2e-57 227.3 187 57.8
arahy.Tifrunner.gnm1.ann1.7PL8A0 Arachis hypogaea HOM05D002553 ORTHO05D002767 3.9e-56 222.2 182 62.1
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.1e-55 220.7 157 65.6
MSTRG.5079 Avicennia marina HOM05D002553 ORTHO05D002767 4.3e-55 218.8 185 57.8
MD12G1223700 Malus domestica HOM05D002553 ORTHO05D002767 4.3e-55 218.8 219 50.2
DCAR_003314 Daucus carota HOM05D002553 ORTHO05D002767 1.4e-53 213.8 154 63.0
BraSC132t45517Z Brassica rapa HOM05D002553 ORTHO05D002767 3.4e-52 209.1 136 72.8
Sabra05G0037500 Salix brachista HOM05D002553 ORTHO05D002767 1.3e-51 207.2 284 42.6
SalBow5G4087 Salvia bowleyana HOM05D002553 ORTHO05D002767 1.7e-51 206.8 183 56.3
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 2.9e-51 206.1 207 52.2
HPP92_001339 Vanilla planifolia HOM05D002553 ORTHO05D002767 1.3e-48 197.2 185 55.1
SMO356G0084 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 5.6e-47 191.8 185 54.6
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.2e-44 184.1 180 53.3
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.7e-43 180.3 155 57.4
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.7e-43 180.3 155 57.4
Pp3c16_17790 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.1e-42 177.6 181 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2814 Anthoceros agrestis HOM05D002553 ORTHO05D002767 2.5e-42 176.4 163 54.0
Pp3c6_5420 Physcomitrium patens HOM05D002553 ORTHO05D002767 2.5e-42 176.4 184 50.5
Gohir.A13G107100 Gossypium hirsutum HOM05D002553 ORTHO05D002767 7.1e-42 174.9 125 65.6
Migut.N01859 Erythranthe guttata HOM05D002553 ORTHO05D002767 6.0e-41 171.8 185 50.8
Mapoly0006s0260 Marchantia polymorpha HOM05D002553 ORTHO05D002767 1.9e-31 140.2 129 51.9
Cre10.g458050 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 5.0e-27 125.6 162 40.7
VMungo0251G1212 Vigna mungo HOM05D002553 ORTHO05D011906 2.5e-26 123.2 117 55.6
CBR_g26142 Chara braunii HOM05D002553 ORTHO05D002767 2.2e-22 110.2 112 51.8
HPP92_001399 Vanilla planifolia HOM05D002553 ORTHO05D002767 8.2e-22 108.2 122 48.4
SEGI_02207 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 1.6e-17 94.0 75 52.0
Os03g0359100 Oryza sativa ssp. japonica HOM05D002553 ORTHO05D002767 3.9e-16 89.4 54 72.2
TPR.G3085 Trifolium pratense HOM05D002553 ORTHO05D002767 1.1e-15 87.8 56 67.9
TPR.G3038 Trifolium pratense HOM05D002553 ORTHO05D002767 2.2e-14 83.6 105 42.9
TPR.G3095 Trifolium pratense HOM05D002553 ORTHO05D002767 1.2e-12 77.8 65 55.4
Oeu013073.1 Olea europaea HOM05D002553 ORTHO05D002767 7.7e-12 75.1 60 55.0
Medtr8g036730 Medicago truncatula HOM05D002553 ORTHO05D002767 1.2e-09 67.8 76 44.7
CBR_g26141 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-08 62.4 69 42.0


User provided reference genes

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