Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23648 Brassica carinata HOM05D008496 ORTHO05D010729 1.0e-163 580.5 408 100.0
C09p05960 Brassica napus HOM05D008496 ORTHO05D010729 7.1e-141 504.6 410 83.4
BolC9t53521H Brassica oleracea HOM05D008496 ORTHO05D010729 7.1e-141 504.6 410 83.4
A09p05480 Brassica napus HOM05D008496 ORTHO05D010729 3.0e-139 499.2 409 89.0
BraA09t36186Z Brassica rapa HOM05D008496 ORTHO05D010729 8.7e-139 497.7 409 88.8
BcaB04g19693 Brassica carinata HOM05D008496 ORTHO05D010729 2.2e-94 350.1 259 71.8
BcaB07g34208 Brassica carinata HOM05D008496 ORTHO05D010729 3.9e-62 243.0 244 55.3
Sp2g21000 Schrenkiella parvula HOM05D008496 ORTHO05D010729 6.6e-62 242.3 277 50.5
C02p58360 Brassica napus HOM05D008496 ORTHO05D010729 1.5e-61 241.1 263 53.2
BcaC03g17812 Brassica carinata HOM05D008496 ORTHO05D010729 3.3e-61 240.0 244 54.9
A02p38800 Brassica napus HOM05D008496 ORTHO05D010729 3.3e-61 240.0 244 54.9
BolC2t11900H Brassica oleracea HOM05D008496 ORTHO05D010729 3.3e-61 240.0 244 54.9
BraA02t08856Z Brassica rapa HOM05D008496 ORTHO05D010729 3.3e-61 240.0 244 54.9
BcaC04g23651 Brassica carinata HOM05D008496 ORTHO05D010729 5.6e-61 239.2 280 53.2
C09p05990 Brassica napus HOM05D008496 ORTHO05D010729 3.6e-60 236.5 280 52.9
BolC9t53524H Brassica oleracea HOM05D008496 ORTHO05D010729 3.6e-60 236.5 280 52.9
Thhalv10005521m.g Eutrema salsugineum HOM05D008496 ORTHO05D010729 6.8e-59 232.3 263 51.3
BcaNung04743 Brassica carinata HOM05D008496 ORTHO05D010729 2.9e-57 226.9 249 53.4
A06p37240 Brassica napus HOM05D008496 ORTHO05D010729 1.1e-56 224.9 277 49.5
A09p05490 Brassica napus HOM05D008496 ORTHO05D010729 1.1e-56 224.9 280 51.4
BraA06t26648Z Brassica rapa HOM05D008496 ORTHO05D010729 1.1e-56 224.9 277 49.5
BraA09t36187Z Brassica rapa HOM05D008496 ORTHO05D010729 1.4e-56 224.6 280 51.1
AT5G27880 Arabidopsis thaliana HOM05D008496 ORTHO05D010729 2.7e-55 220.3 247 55.9
C07p41230 Brassica napus HOM05D008496 ORTHO05D010729 2.7e-55 220.3 259 52.1
BolC7t44648H Brassica oleracea HOM05D008496 ORTHO05D010729 3.5e-55 219.9 277 49.8
AL6G39050 Arabidopsis lyrata HOM05D008496 ORTHO05D010729 4.6e-55 219.5 248 54.0
BcaC04g23653 Brassica carinata HOM05D008496 ORTHO05D010729 7.8e-55 218.8 280 50.4
CARHR186360 Cardamine hirsuta HOM05D008496 ORTHO05D010729 1.0e-54 218.4 250 54.0
Carub.0006s2470 Capsella rubella HOM05D008496 ORTHO05D010729 1.5e-53 214.5 231 52.8
C09p06000 Brassica napus HOM05D008496 ORTHO05D010729 1.2e-52 211.5 280 49.3
BolC9t53525H Brassica oleracea HOM05D008496 ORTHO05D010729 1.2e-52 211.5 280 49.3
BcaC04g23649 Brassica carinata HOM05D008496 ORTHO05D010729 2.1e-52 210.7 280 49.3
C09p05980 Brassica napus HOM05D008496 ORTHO05D010729 2.1e-52 210.7 279 49.8
BolC9t53523H Brassica oleracea HOM05D008496 ORTHO05D010729 2.1e-52 210.7 279 49.8
A09p05500 Brassica napus HOM05D008496 ORTHO05D010729 4.7e-52 209.5 282 49.3
BraA09t36189Z Brassica rapa HOM05D008496 ORTHO05D010729 8.1e-52 208.8 284 48.9
CARHR266170 Cardamine hirsuta HOM05D008496 ORTHO05D010729 2.9e-49 200.3 246 49.6
BcaB04g19694 Brassica carinata HOM05D008496 ORTHO05D010729 5.4e-48 196.1 247 50.6
CARHR183000 Cardamine hirsuta HOM05D008496 ORTHO05D010729 1.7e-46 191.0 247 49.0
CARHR182960 Cardamine hirsuta HOM05D008496 ORTHO05D010729 1.7e-41 174.5 251 48.6
Aa31LG11G9630 Aethionema arabicum HOM05D008496 ORTHO05D010729 1.1e-35 155.2 244 42.2
BcaC03g17813 Brassica carinata HOM05D008496 ORTHO05D010729 4.2e-32 143.3 158 53.2
CARHR292330 Cardamine hirsuta HOM05D008496 ORTHO05D010729 1.2e-31 141.7 247 39.3
CARHR292220 Cardamine hirsuta HOM05D008496 ORTHO05D010729 2.1e-31 141.0 251 41.4
CARHR182980 Cardamine hirsuta HOM05D008496 ORTHO05D010729 6.0e-23 112.8 115 51.3
CARHR289360 Cardamine hirsuta HOM05D008496 ORTHO05D010729 1.0e-22 112.1 250 36.0
THA.LOC104803109 Tarenaya hassleriana HOM05D008496 ORTHO05D010729 1.9e-21 107.8 226 35.0
THA.LOC104820093 Tarenaya hassleriana HOM05D008496 ORTHO05D010729 3.4e-18 97.1 232 34.5
THA.LOC104821880 Tarenaya hassleriana HOM05D008496 ORTHO05D010729 2.3e-14 84.3 225 30.7
Aa31LG5G11530 Aethionema arabicum HOM05D000333 ORTHO05D000190 2.2e-09 67.8 50 58.0
THA.LOC104823317 Tarenaya hassleriana HOM05D000333 ORTHO05D000190 6.5e-09 66.2 65 50.8
unitig_0.g1107 Utricularia gibba HOM05D000333 ORTHO05D000190 8.5e-09 65.9 93 43.0
AL6G10170 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 1.4e-08 65.1 47 59.6
BcaB05g21905 Brassica carinata HOM05D000333 ORTHO05D000190 1.9e-08 64.7 47 59.6
CARHR212210 Cardamine hirsuta HOM05D000333 ORTHO05D000190 1.9e-08 64.7 47 59.6
Sp6g41100 Schrenkiella parvula HOM05D000333 ORTHO05D000190 1.9e-08 64.7 47 59.6
Actinidia01691 Actinidia chinensis HOM05D000333 ORTHO05D000190 2.5e-08 64.3 71 45.1
BcaC03g13104 Brassica carinata HOM05D000333 ORTHO05D000190 2.5e-08 64.3 47 59.6
BNapus_Darmor_BZH_scaffold_209p00070 Brassica napus HOM05D000333 ORTHO05D000190 2.5e-08 64.3 47 59.6
BolC2t05989H Brassica oleracea HOM05D000333 ORTHO05D000190 2.5e-08 64.3 47 59.6
BraA02t04674Z Brassica rapa HOM05D000333 ORTHO05D000190 2.5e-08 64.3 47 59.6
Carub.0024s0019 Capsella rubella HOM05D000333 ORTHO05D000190 4.2e-08 63.5 51 54.9
VMungo1080G0248 Vigna mungo HOM05D000333 ORTHO05D000190 1.2e-07 62.0 133 34.6
AT5G54340 Arabidopsis thaliana HOM05D017374 ORTHO05D018424 1.6e-07 61.6 115 33.9
Thhalv10015799m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 1.6e-07 61.6 44 61.4
AUR62031681 Chenopodium quinoa HOM05D000333 ORTHO05D000190 2.1e-07 61.2 72 45.8
Eucgr.B03372 Eucalyptus grandis HOM05D001250 ORTHO05D000627 2.7e-07 60.8 75 44.0
Phvul.005G014400 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 2.7e-07 60.8 107 37.4
BcaB01g06121 Brassica carinata HOM05D000333 ORTHO05D000190 3.6e-07 60.5 47 55.3
BcaB01g06122 Brassica carinata HOM05D000333 ORTHO05D000190 3.6e-07 60.5 47 55.3
BolC3t12590H Brassica oleracea HOM05D000333 ORTHO05D000190 3.6e-07 60.5 47 55.3
AUR62032564 Chenopodium quinoa HOM05D000333 ORTHO05D000190 3.6e-07 60.5 38 68.4
Duzib177G0266 Durio zibethinus HOM05D000333 ORTHO05D000190 3.6e-07 60.5 75 45.3
FvH4_2g19520 Fragaria vesca HOM05D000333 ORTHO05D000190 3.6e-07 60.5 126 31.7
Medtr1g107055 Medicago truncatula HOM05D000333 ORTHO05D000190 4.6e-07 60.1 133 33.8
CANSAT11G1827 Cannabis sativa HOM05D000333 ORTHO05D000190 6.1e-07 59.7 63 46.0
FAN27G0298 Fragaria x ananassa HOM05D000333 ORTHO05D000190 6.1e-07 59.7 126 31.7
Sp6g16360 Schrenkiella parvula HOM05D016277 ORTHO05D014491 6.1e-07 59.7 111 35.1
AT5G01860 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 7.9e-07 59.3 43 60.5
Hma1.2p1_0233F.1_g098180 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 7.9e-07 59.3 127 34.6
Psat6g216640 Pisum sativum HOM05D000333 ORTHO05D000190 7.9e-07 59.3 132 34.8
AL8G29770 Arabidopsis lyrata HOM05D017374 ORTHO05D018424 1.0e-06 58.9 202 30.2
Oeu042146.1 Olea europaea HOM05D000333 ORTHO05D000190 1.0e-06 58.9 124 31.5
MD07G1042100 Malus domestica HOM05D000333 ORTHO05D000190 1.4e-06 58.5 91 42.9
Manes.11G008900 Manihot esculenta HOM05D000333 ORTHO05D000190 1.4e-06 58.5 145 31.0
A03p00070 Brassica napus HOM05D000333 ORTHO05D000190 1.8e-06 58.2 47 53.2
C03p00210 Brassica napus HOM05D000333 ORTHO05D000190 1.8e-06 58.2 47 53.2
C03p08270 Brassica napus HOM05D000333 ORTHO05D000190 1.8e-06 58.2 63 46.0
BraA03t09396Z Brassica rapa HOM05D000333 ORTHO05D000190 1.8e-06 58.2 47 53.2
Duzib128G1715 Durio zibethinus HOM05D000333 ORTHO05D000190 1.8e-06 58.2 90 41.1
Oeu014622.1 Olea europaea HOM05D000333 ORTHO05D000190 1.8e-06 58.2 86 41.9
EL10Ac3g05847 Beta vulgaris HOM05D000333 ORTHO05D000190 2.3e-06 57.8 138 32.6
Lsat_1_v5_gn_3_9241 Lactuca sativa HOM05D003047 ORTHO05D000627 2.3e-06 57.8 71 43.7
Lalb_Chr18g0048121 Lupinus albus HOM05D000333 ORTHO05D000190 2.3e-06 57.8 84 39.3
Oeu042145.1 Olea europaea HOM05D000333 ORTHO05D000190 2.3e-06 57.8 125 29.6
Phvul.005G014500 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 2.3e-06 57.8 107 36.4
Potri.003G180600 Populus trichocarpa HOM05D000333 ORTHO05D000190 2.3e-06 57.8 100 37.0
PGR031G1544 Punica granatum HOM05D000333 ORTHO05D000190 2.3e-06 57.8 87 37.9
Thecc.10G138600 Theobroma cacao HOM05D000333 ORTHO05D000190 2.3e-06 57.8 47 55.3
Actinidia01521 Actinidia chinensis HOM05D000840 ORTHO05D000670 3.0e-06 57.4 83 39.8
Cpa.g.sc10.105 Carica papaya HOM05D000333 ORTHO05D000190 3.0e-06 57.4 66 48.5
Duzib106G1870 Durio zibethinus HOM05D000333 ORTHO05D000190 3.0e-06 57.4 56 48.2
Glyma.20G130600 Glycine max HOM05D000333 ORTHO05D000190 3.0e-06 57.4 170 30.6
Duzib114G0860 Durio zibethinus HOM05D000333 ORTHO05D000190 3.9e-06 57.0 41 58.5
Glyma.04G127600 Glycine max HOM05D000333 ORTHO05D000190 3.9e-06 57.0 146 29.5
PGR031G1471 Punica granatum HOM05D000333 ORTHO05D000190 3.9e-06 57.0 91 39.6
QL04p021859 Quercus lobata HOM05D000333 ORTHO05D000190 3.9e-06 57.0 40 62.5
RcHm_v2.0_Chr6g0285241 Rosa chinensis HOM05D000333 ORTHO05D000190 3.9e-06 57.0 135 33.3
arahy.Tifrunner.gnm1.ann1.2L056W Arachis hypogaea HOM05D000333 ORTHO05D000190 5.1e-06 56.6 99 37.4
THA.LOC104820094 Tarenaya hassleriana HOM05D008496 ORTHO05D000190 5.1e-06 56.6 83 39.8
Thecc.05G315800 Theobroma cacao HOM05D000333 ORTHO05D000190 5.1e-06 56.6 53 50.9
CiPaw.14G010900 Carya illinoinensis HOM05D000333 ORTHO05D000190 6.7e-06 56.2 56 48.2
Ciclev10003844m.g Citrus clementina HOM05D000333 ORTHO05D000190 6.7e-06 56.2 49 51.0
Ciclev10027023m.g Citrus clementina HOM05D000333 ORTHO05D000190 6.7e-06 56.2 95 37.9
FAN02G2031 Fragaria x ananassa HOM05D003047 ORTHO05D000627 6.7e-06 56.2 135 31.1
Gohir.D13G112750 Gossypium hirsutum HOM05D000333 ORTHO05D000190 6.7e-06 56.2 53 50.9
Gorai.013G126700 Gossypium raimondii HOM05D000333 ORTHO05D000190 6.7e-06 56.2 53 50.9
Lsat_1_v5_gn_3_9161 Lactuca sativa HOM05D000333 ORTHO05D000190 6.7e-06 56.2 76 40.8
Nn3g17902 Nelumbo nucifera HOM05D001250 ORTHO05D000627 6.7e-06 56.2 60 46.7
Nitab4.5_0001259g0040 Nicotiana tabacum HOM05D000333 ORTHO05D000190 6.7e-06 56.2 77 41.6
Psat5g224200 Pisum sativum HOM05D000333 ORTHO05D000190 6.7e-06 56.2 86 43.0
Potri.003G192000 Populus trichocarpa HOM05D000333 ORTHO05D000190 6.7e-06 56.2 78 37.2
Cpa.g.sc48.112 Carica papaya HOM05D000333 ORTHO05D000190 8.8e-06 55.8 229 26.6
AUR62029308 Chenopodium quinoa HOM05D000333 ORTHO05D000190 8.8e-06 55.8 37 59.5
COL.COLO4_10553 Corchorus olitorius HOM05D000333 ORTHO05D000190 8.8e-06 55.8 76 44.7
Migut.B01175 Erythranthe guttata HOM05D000333 ORTHO05D000190 8.8e-06 55.8 45 57.8
Eucgr.H03258 Eucalyptus grandis HOM05D000333 ORTHO05D000190 8.8e-06 55.8 44 56.8
Glyma.06G311500 Glycine max HOM05D000333 ORTHO05D000190 8.8e-06 55.8 147 29.9
Gorai.011G221900 Gossypium raimondii HOM05D000333 ORTHO05D000190 8.8e-06 55.8 77 40.3
HanXRQChr15g0489261 Helianthus annuus HOM05D000333 ORTHO05D000190 8.8e-06 55.8 174 28.2
Manes.07G066600 Manihot esculenta HOM05D000333 ORTHO05D000190 8.8e-06 55.8 68 45.6
Phvul.008G238700 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 8.8e-06 55.8 136 30.9
Potri.018G094300 Populus trichocarpa HOM05D000333 ORTHO05D000190 8.8e-06 55.8 114 33.3
Sabra01G0032800 Salix brachista HOM05D000333 ORTHO05D000190 8.8e-06 55.8 182 28.0
Sed0016667 Sechium edule HOM05D000333 ORTHO05D000190 8.8e-06 55.8 51 51.0
THA.LOC104818940 Tarenaya hassleriana HOM05D000333 ORTHO05D000190 8.8e-06 55.8 104 37.5
TPR.G1249 Trifolium pratense HOM05D000333 ORTHO05D000190 8.8e-06 55.8 68 44.1
TAR376G0179 Trochodendron aralioides HOM05D000333 ORTHO05D000190 8.8e-06 55.8 65 46.2


User provided reference genes

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