Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 8.4e-112 407.1 220 100.0
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 8.4e-112 407.1 220 100.0
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 2.9e-104 382.1 220 95.9
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 4.3e-100 368.2 215 92.6
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 4.8e-99 364.8 215 91.6
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.3e-85 319.3 221 81.4
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 3.3e-84 315.5 222 80.2
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 3.3e-84 315.5 222 80.2
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-83 313.2 224 80.4
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 2.4e-82 309.3 220 80.0
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 8.4e-80 300.8 247 72.9
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.4e-79 300.1 247 72.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.3e-75 287.0 223 74.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 2.8e-75 285.8 220 73.2
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 3.1e-74 282.3 219 75.3
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.2e-73 280.4 220 74.1
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.3e-72 276.9 222 73.0
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.5e-71 272.7 223 71.3
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.1e-66 257.3 208 68.3
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 7.2e-63 244.6 209 72.2
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 6.3e-59 231.5 217 62.7
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 5.2e-53 211.8 213 55.4
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.7e-51 206.8 202 57.4
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.7e-51 206.8 213 56.3
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 2.8e-51 206.1 214 58.9
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 4.8e-51 205.3 204 58.3
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-50 204.1 209 54.5
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 5.3e-50 201.8 214 56.1
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 9.1e-50 201.1 218 56.4
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.2e-49 200.7 196 55.6
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.0e-49 199.9 205 57.1
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.0e-49 199.9 205 57.1
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 2.6e-49 199.5 214 56.5
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.5e-49 199.1 205 53.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 3.5e-49 199.1 196 55.6
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.5e-49 199.1 214 55.1
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.5e-49 199.1 207 53.1
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 3.5e-49 199.1 194 58.2
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 4.5e-49 198.7 201 55.7
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 4.5e-49 198.7 202 55.0
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.9e-49 198.4 214 54.7
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 5.9e-49 198.4 219 53.0
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 7.7e-49 198.0 209 56.0
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 7.7e-49 198.0 205 52.7
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.0e-48 197.6 196 55.1
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 2.2e-48 196.4 204 56.4
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 3.8e-48 195.7 213 54.0
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.1e-47 194.1 202 55.0
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.1e-47 194.1 219 52.1
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.9e-47 193.4 203 54.2
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 2.5e-47 193.0 208 54.8
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.2e-47 192.6 206 53.9
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 4.2e-47 192.2 194 55.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 5.5e-47 191.8 209 53.1
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 7.2e-47 191.4 205 51.7
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.6e-46 190.3 192 54.2
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.6e-46 190.3 201 51.7
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.6e-46 190.3 210 51.9
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.1e-46 189.9 196 52.6
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 4.7e-46 188.7 207 55.6
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 4.7e-46 188.7 189 55.0
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.0e-45 187.6 175 60.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.0e-45 187.6 207 52.7
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 3.0e-45 186.0 203 52.2
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 3.0e-45 186.0 198 52.0
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.0e-45 185.7 170 57.1
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 8.8e-45 184.5 209 51.7
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 2.0e-44 183.3 200 52.5
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 9.7e-44 181.0 213 51.6
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 9.7e-44 181.0 200 51.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 1.7e-43 180.3 205 50.2
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 2.8e-43 179.5 194 51.5
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 4.8e-43 178.7 193 50.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 8.2e-43 177.9 201 50.7
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.4e-42 177.2 199 50.8
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 2.4e-42 176.4 191 53.9
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 4.1e-42 175.6 214 51.9
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 4.1e-42 175.6 198 52.0
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 4.1e-42 175.6 168 56.5
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 5.3e-42 175.3 201 47.8
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.6e-41 173.7 213 49.3
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.0e-40 171.0 205 46.3
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.7e-40 170.2 200 49.0
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.7e-40 170.2 204 48.0
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 2.2e-40 169.9 206 49.0
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.2e-40 169.9 209 50.2
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.8e-40 169.1 205 44.9
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.8e-40 169.1 216 48.1
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.0e-40 168.7 202 49.5
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-39 167.5 194 47.9
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.9e-39 166.8 222 47.3
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.9e-39 166.8 211 46.0
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.2e-39 166.0 203 48.3
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 5.5e-39 165.2 196 47.4
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.2e-38 164.1 211 45.5
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.6e-38 162.5 212 46.2
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.8e-37 160.2 204 49.5
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.3e-37 159.8 218 50.0
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 2.3e-37 159.8 207 44.4
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 6.8e-37 158.3 147 54.4
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.2e-36 157.5 209 49.3
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.5e-36 157.1 199 48.2
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.3e-35 154.1 198 46.0
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.2e-35 153.3 206 43.7
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 4.8e-35 152.1 203 44.8
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 4.8e-35 152.1 194 44.8
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 4.8e-35 152.1 210 41.4
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-34 150.6 198 43.9
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 5.4e-34 148.7 211 43.1
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 2.0e-33 146.7 141 56.7
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.0e-32 144.4 192 43.8
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.4e-29 134.0 205 40.0
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 3.0e-29 132.9 206 40.3
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 6.3e-27 125.2 218 39.0
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 2.0e-25 120.2 199 42.7
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 7.8e-25 118.2 196 40.3
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.7e-24 117.1 120 56.7
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 6.6e-24 115.2 120 55.8
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 9.5e-23 111.3 85 63.5
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 1.6e-22 110.5 176 38.1
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.8e-22 109.8 196 39.8
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.8e-22 109.8 196 39.8
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 6.1e-22 108.6 188 37.2
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.8e-21 107.1 196 38.8
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 3.0e-21 106.3 196 38.8
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 8.9e-21 104.8 194 37.6
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.9e-19 99.8 200 34.5
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 6.4e-19 98.6 208 36.1
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 2.7e-17 93.2 201 33.8
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.7e-16 90.5 180 30.6
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.7e-16 90.5 181 34.8
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.5e-15 87.4 178 32.6
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.9e-15 87.0 193 31.1
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 3.1e-13 79.7 175 33.7
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.7e-11 73.9 86 41.9
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 4.3e-07 59.3 50 52.0
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 4.7e-06 55.8 96 29.2
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 8.1e-06 55.1 64 43.8
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 8.1e-06 55.1 137 35.0


User provided reference genes

Program Settings