Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23515 Brassica carinata HOM05D005947 ORTHO05D007498 8.2e-58 226.9 116 100.0
BcaB04g19841 Brassica carinata HOM05D005947 ORTHO05D007498 6.3e-18 94.4 45 97.8
Aa31LG11G3310 Aethionema arabicum HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
Aa31sc89G80 Aethionema arabicum HOM05D000041 ORTHO05D000061 3.1e-17 92.0 45 93.3
AL6G35340 Arabidopsis lyrata HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
AT5G24020 Arabidopsis thaliana HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
BcaNung01201 Brassica carinata HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
BcaNung01829 Brassica carinata HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
A06p34800 Brassica napus HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
C07p43700 Brassica napus HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
BolC7t44900H Brassica oleracea HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
BraA06t26407Z Brassica rapa HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
CARHR189560 Cardamine hirsuta HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
Thhalv10005713m.g Eutrema salsugineum HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
Sp2g23290 Schrenkiella parvula HOM05D005947 ORTHO05D007498 3.1e-17 92.0 45 93.3
Carub.0006s2174 Capsella rubella HOM05D005947 ORTHO05D007498 4.1e-17 91.7 45 91.1
BcaC05g27523 Brassica carinata HOM05D005947 ORTHO05D007498 9.1e-17 90.5 44 93.2
COL.COLO4_10059 Corchorus olitorius HOM05D005947 ORTHO05D007498 1.2e-16 90.1 45 93.3
Lj2g0014936 Lotus japonicus HOM05D005947 ORTHO05D007498 1.6e-16 89.7 45 88.9
Nn1g01628 Nelumbo nucifera HOM05D005947 ORTHO05D007498 2.0e-16 89.4 45 91.1
FAN01G2305 Fragaria x ananassa HOM05D005947 ORTHO05D007498 3.5e-16 88.6 45 88.9
FAN03G2555 Fragaria x ananassa HOM05D005947 ORTHO05D007498 3.5e-16 88.6 45 88.9
FAN03G2880 Fragaria x ananassa HOM05D005947 ORTHO05D007498 3.5e-16 88.6 45 88.9
FAN10G0541 Fragaria x ananassa HOM05D005947 ORTHO05D007498 3.5e-16 88.6 45 88.9
FAN10G2124 Fragaria x ananassa HOM05D005947 ORTHO05D007498 3.5e-16 88.6 45 88.9
Mapoly0042s0122 Marchantia polymorpha HOM05D005947 ORTHO05D007498 3.5e-16 88.6 45 88.9
THA.LOC104798913 Tarenaya hassleriana HOM05D005947 ORTHO05D007498 4.5e-16 88.2 45 88.9
THA.LOC104814930 Tarenaya hassleriana HOM05D005947 ORTHO05D007498 4.5e-16 88.2 45 88.9
Glyma.09G132300 Glycine max HOM05D005947 ORTHO05D007498 5.9e-16 87.8 45 86.7
Eucgr.A02743 Eucalyptus grandis HOM05D005947 ORTHO05D007498 7.7e-16 87.4 45 91.1
FvH4_7g30210 Fragaria vesca HOM05D005947 ORTHO05D007498 7.7e-16 87.4 45 86.7
FAN06G0215 Fragaria x ananassa HOM05D005947 ORTHO05D007498 7.7e-16 87.4 45 86.7
FAN06G1268 Fragaria x ananassa HOM05D005947 ORTHO05D007498 7.7e-16 87.4 45 86.7
QL09p012952 Quercus lobata HOM05D005947 ORTHO05D007498 7.7e-16 87.4 45 91.1
Ciclev10005457m.g Citrus clementina HOM05D005947 ORTHO05D007498 1.0e-15 87.0 45 88.9
Lalb_Chr03g0034831 Lupinus albus HOM05D005947 ORTHO05D007498 1.3e-15 86.7 45 88.9
Cpa.g.sc107.105 Carica papaya HOM05D005947 ORTHO05D007498 1.7e-15 86.3 45 88.9
Phvul.004G106800 Phaseolus vulgaris HOM05D005947 ORTHO05D007498 1.7e-15 86.3 45 86.7
VMungo0464G0961 Vigna mungo HOM05D005947 ORTHO05D007498 1.7e-15 86.3 45 86.7
Aqoxy7G00241 Aquilegia oxysepala HOM05D005947 ORTHO05D007498 2.2e-15 85.9 45 88.9
Manes.14G022800 Manihot esculenta HOM05D005947 ORTHO05D007498 2.2e-15 85.9 45 88.9
CANSAT21G1923 Cannabis sativa HOM05D005947 ORTHO05D007498 2.9e-15 85.5 46 84.8
Cfa016284 Carpinus fangiana HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
CiPaw.05G262900 Carya illinoinensis HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
Haze_00040 Corylus avellana HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
Duzib084G0036 Durio zibethinus HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
Duzib205G0732 Durio zibethinus HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
Gohir.A08G098000 Gossypium hirsutum HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
Gohir.D08G109600 Gossypium hirsutum HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
Gorai.004G117300 Gossypium raimondii HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
SMO364G0223 Selaginella moellendorffii HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 84.4
Thecc.03G183900 Theobroma cacao HOM05D005947 ORTHO05D007498 2.9e-15 85.5 45 86.7
Migut.F00295 Erythranthe guttata HOM05D005947 ORTHO05D007498 3.8e-15 85.1 45 86.7
Nitab4.5_0000084g0430 Nicotiana tabacum HOM05D005947 ORTHO05D007498 3.8e-15 85.1 45 86.7
Nitab4.5_0008851g0010 Nicotiana tabacum HOM05D005947 ORTHO05D007498 3.8e-15 85.1 45 86.7
Sed0027671 Sechium edule HOM05D005947 ORTHO05D007498 3.8e-15 85.1 45 86.7
TWI14G0750 Tripterygium wilfordii HOM05D005947 ORTHO05D007498 3.8e-15 85.1 45 84.4
unitig_37.g11971 Utricularia gibba HOM05D005947 ORTHO05D007498 3.8e-15 85.1 45 86.7
AagrBONN_evm.TU.Sc2ySwM_368.3402 Anthoceros agrestis HOM05D005947 ORTHO05D007498 5.0e-15 84.7 45 80.0
MSTRG.27089 Avicennia marina HOM05D005947 ORTHO05D007498 5.0e-15 84.7 45 84.4
Lalb_Chr01g0009481 Lupinus albus HOM05D005947 ORTHO05D007498 5.0e-15 84.7 45 86.7
Oeu034005.1 Olea europaea HOM05D005947 ORTHO05D007498 5.0e-15 84.7 45 88.9
Solyc03g007980.1 Solanum lycopersicum HOM05D005947 ORTHO05D007498 5.0e-15 84.7 45 86.7
Sopen03g003920 Solanum pennellii HOM05D005947 ORTHO05D007498 5.0e-15 84.7 45 86.7
PGSC0003DMG400010127 Solanum tuberosum HOM05D005947 ORTHO05D007498 5.0e-15 84.7 45 86.7
Atru.chr1.362 Acer truncatum HOM05D005947 ORTHO05D007498 6.5e-15 84.3 45 84.4
Actinidia31839 Actinidia chinensis HOM05D005947 ORTHO05D007498 6.5e-15 84.3 45 86.7
MSTRG.8712 Avicennia marina HOM05D005947 ORTHO05D007498 6.5e-15 84.3 45 84.4
AUR62021126 Chenopodium quinoa HOM05D005947 ORTHO05D007498 6.5e-15 84.3 45 86.7
TAR375G0765 Trochodendron aralioides HOM05D005947 ORTHO05D007498 6.5e-15 84.3 45 86.7
arahy.Tifrunner.gnm1.ann1.4MV0VI Arachis hypogaea HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 84.4
arahy.Tifrunner.gnm1.ann1.D9DNDH Arachis hypogaea HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 84.4
CDE02G4387 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 82.2
CDE11G0334 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 82.2
ClCG01G000930 Citrullus lanatus HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 84.4
MELO3C005838.2 Cucumis melo HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 84.4
CsaV3_5G001080 Cucumis sativus L. HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 84.4
Peaxi162Scf00444g00012 Petunia axillaris HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 86.7
Sed0018068 Sechium edule HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 84.4
TWI39G0764 Tripterygium wilfordii HOM05D005947 ORTHO05D007498 8.5e-15 84.0 45 82.2
Hma1.2p1_0274F.1_g110170 Hydrangea macrophylla HOM05D005947 ORTHO05D007498 1.1e-14 83.6 45 84.4
Potri.004G080100 Populus trichocarpa HOM05D005947 ORTHO05D007498 1.1e-14 83.6 45 86.7
PGR042G2417 Punica granatum HOM05D005947 ORTHO05D007498 1.1e-14 83.6 45 84.4
CSS0033085 Camellia sinensis var. sinensis HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
CAN.G236.6 Capsicum annuum HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
DCAR_010659 Daucus carota HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
Dinv35250 Davidia involucrata HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
ECA232G3749 Erigeron canadensis HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
Lsat_1_v5_gn_9_56500 Lactuca sativa HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
Lj1P1004T65 Lonicera japonica HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
Nn6g33304 Nelumbo nucifera HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
Rhsim09G0200500 Rhododendron simsii HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
Sabra04G0053200 Salix brachista HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 86.7
SalBow4G2978 Salvia bowleyana HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
vmacro09816 Vaccinium macrocarpon HOM05D005947 ORTHO05D007498 1.5e-14 83.2 45 84.4
Glyma.16G179200 Glycine max HOM05D005947 ORTHO05D007498 1.9e-14 82.8 45 82.2
PSO478G4027 Papaver somniferum HOM05D005947 ORTHO05D007498 1.9e-14 82.8 45 84.4
PSO782G1988 Papaver somniferum HOM05D005947 ORTHO05D007498 1.9e-14 82.8 45 84.4
AUR62031418 Chenopodium quinoa HOM05D005947 ORTHO05D007498 2.5e-14 82.4 45 84.4
Cc02_g02400 Coffea canephora HOM05D005947 ORTHO05D007498 2.5e-14 82.4 45 84.4
MD07G1278700 Malus domestica HOM05D005947 ORTHO05D007498 2.5e-14 82.4 45 82.2
Prupe.2G300600 Prunus persica HOM05D005947 ORTHO05D007498 2.5e-14 82.4 45 82.2
RcHm_v2.0_Chr1g0378251 Rosa chinensis HOM05D005947 ORTHO05D007498 2.5e-14 82.4 45 82.2
Ah.07g206580 Amaranthus hybridus HOM05D005947 ORTHO05D007498 3.2e-14 82.0 45 82.2
MBI11_g04748_MAGBIO Magnolia biondii HOM05D005947 ORTHO05D007498 3.2e-14 82.0 45 80.0
Sc19g0001250 Simmondsia chinensis HOM05D005947 ORTHO05D007498 3.2e-14 82.0 45 82.2
SGA_v2.0_scaffold60G21105 Striga asiatica HOM05D005947 ORTHO05D007498 3.2e-14 82.0 45 82.2
Dinv28389 Davidia involucrata HOM05D005947 ORTHO05D007498 4.2e-14 81.6 45 82.2
Pp3c1_24820 Physcomitrium patens HOM05D005947 ORTHO05D007498 4.2e-14 81.6 45 80.0
Pp3c2_15820 Physcomitrium patens HOM05D005947 ORTHO05D007498 4.2e-14 81.6 45 80.0
TAR374G0782 Trochodendron aralioides HOM05D005947 ORTHO05D007498 4.2e-14 81.6 45 84.4
Ca_20085_v3 Cicer arietinum L. HOM05D005947 ORTHO05D007498 2.1e-13 79.3 51 76.5
SEGI_04763 Sequoiadendron giganteum HOM05D005947 ORTHO05D007498 2.1e-13 79.3 44 79.5
Psat0ss1860g0200 Pisum sativum HOM05D005947 ORTHO05D007498 1.2e-11 73.6 57 66.7
TPR.G33515 Trifolium pratense HOM05D005947 ORTHO05D007498 1.5e-11 73.2 63 60.3
Medtr6g048300 Medicago truncatula HOM05D005947 ORTHO05D007498 5.7e-11 71.2 66 57.6
ATR0661G312 Amborella trichopoda HOM05D005947 ORTHO05D007498 8.3e-10 67.4 44 70.5
Os06g0106000 Oryza sativa ssp. japonica HOM05D005947 ORTHO05D007498 3.8e-07 58.5 44 59.1
Zm00001eb268640 Zea mays HOM05D005947 ORTHO05D007498 3.8e-07 58.5 44 59.1


User provided reference genes

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