Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1184.9 601 100.0
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1177.5 601 99.7
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1164.4 601 98.3
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1159.8 601 95.8
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1158.3 601 95.5
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1154.4 601 95.2
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 0.0e+00 1125.5 601 95.2
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1124.8 601 94.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1122.8 601 94.8
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1119.4 601 94.7
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 0.0e+00 1118.2 601 92.7
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1114.0 601 94.2
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 0.0e+00 1101.7 601 90.7
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 0.0e+00 1094.3 601 90.3
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 0.0e+00 1089.7 602 91.4
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 0.0e+00 1082.0 601 91.3
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.9e-299 1031.9 602 86.7
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.3e-292 1009.2 601 82.5
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 7.2e-291 1003.4 604 82.5
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 2.7e-290 1001.5 601 82.0
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 4.4e-288 994.2 604 81.6
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 6.3e-287 990.3 575 84.0
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 1.8e-286 988.8 574 84.0
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 3.1e-286 988.0 605 81.2
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.6e-285 985.7 607 81.7
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 7.7e-285 983.4 596 82.0
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.3e-284 982.6 605 83.0
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.5e-275 952.6 603 80.6
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 4.2e-275 951.0 601 80.7
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.5e-267 926.0 520 87.3
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 3.7e-263 911.4 607 76.6
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 8.3e-263 910.2 607 73.3
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 2.4e-262 908.7 570 77.0
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.4e-262 907.5 571 76.7
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 5.4e-262 907.5 571 76.7
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.0e-262 907.1 571 76.7
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 4.6e-261 904.4 570 76.7
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 5.9e-261 904.0 571 75.8
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.0e-260 903.3 570 76.7
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.9e-260 901.4 570 76.5
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.1e-259 899.8 570 76.3
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.5e-259 899.4 571 74.8
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 4.3e-259 897.9 572 75.7
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 7.3e-259 897.1 569 76.3
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 2.1e-258 895.6 570 74.9
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.1e-258 895.6 570 75.6
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 2.1e-258 895.6 570 75.3
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 4.7e-258 894.4 573 76.1
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 3.1e-257 891.7 576 74.7
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 6.8e-257 890.6 576 74.8
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 1.5e-256 889.4 570 74.6
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 1.5e-256 889.4 570 75.8
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.5e-256 889.4 577 74.7
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 4.4e-256 887.9 556 75.7
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.8e-256 887.5 895 55.2
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 9.8e-256 886.7 576 75.0
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 9.8e-256 886.7 570 75.1
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 9.8e-256 886.7 570 74.7
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 2.9e-255 885.2 574 74.4
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 2.9e-255 885.2 622 72.3
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 3.7e-255 884.8 571 75.0
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 2.4e-254 882.1 567 74.8
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 2.4e-254 882.1 594 73.6
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 4.1e-254 881.3 553 76.1
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 9.2e-254 880.2 571 74.3
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 9.2e-254 880.2 571 73.4
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.2e-253 879.8 572 76.4
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 1.2e-253 879.8 571 73.4
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.6e-253 879.4 572 73.4
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 2.0e-253 879.0 576 74.1
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 2.7e-253 878.6 579 74.1
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 4.6e-253 877.9 549 76.0
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 6.0e-253 877.5 553 75.2
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 7.8e-253 877.1 574 74.2
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.7e-252 875.9 547 76.6
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 3.9e-252 874.8 570 74.4
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.0e-252 874.4 626 70.3
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 8.6e-252 873.6 562 74.7
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 8.6e-252 873.6 570 74.2
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 8.6e-252 873.6 573 74.5
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 1.5e-251 872.8 556 73.7
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.5e-251 872.1 626 70.1
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 3.3e-251 871.7 570 74.7
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 3.3e-251 871.7 601 70.9
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 3.3e-251 871.7 570 74.0
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 4.3e-251 871.3 578 72.7
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 5.6e-251 870.9 569 74.9
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 7.3e-251 870.5 578 73.0
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 9.5e-251 870.2 596 72.5
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.6e-250 869.4 626 69.8
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.6e-250 869.4 574 72.6
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 3.6e-250 868.2 555 75.3
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 4.7e-250 867.8 572 74.3
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.1e-249 866.7 571 72.7
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 1.8e-249 865.9 570 73.3
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 3.1e-249 865.1 565 73.6
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 4.0e-249 864.8 573 72.6
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 5.2e-249 864.4 575 73.7
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 5.2e-249 864.4 550 74.5
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 6.8e-249 864.0 573 72.6
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 8.9e-249 863.6 571 72.9
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 2.0e-248 862.4 572 72.0
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 3.4e-248 861.7 558 74.9
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 4.4e-248 861.3 570 73.5
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 4.4e-248 861.3 570 72.6
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 5.8e-248 860.9 594 70.7
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.9e-247 858.6 594 70.5
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 4.9e-247 857.8 574 72.1
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 1.4e-246 856.3 570 73.9
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.1e-245 852.4 570 72.3
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 2.7e-245 852.0 570 72.3
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.0e-244 850.1 576 71.4
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 3.3e-243 845.1 708 61.6
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 4.7e-242 841.3 552 74.5
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 6.2e-242 840.9 589 70.5
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 6.2e-242 840.9 533 74.5
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.4e-241 839.7 575 70.4
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 4.1e-238 828.2 520 76.0
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 9.6e-235 817.0 574 70.0
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 3.6e-234 815.1 604 68.0
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.6e-229 799.7 527 74.6
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 9.6e-227 790.4 542 69.7
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 5.8e-224 781.2 582 65.6
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 3.0e-220 768.8 496 75.4
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 9.3e-214 747.3 908 46.9
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.3e-207 726.9 577 61.5
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 2.8e-194 682.6 571 61.1
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.3e-194 681.4 570 60.9
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 5.0e-191 671.8 566 58.0
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.1e-189 666.4 515 65.2
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 8.8e-188 661.0 403 78.7
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.7e-187 658.3 434 79.5
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.2e-178 629.8 442 67.0
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 4.4e-163 578.9 343 83.4
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-152 544.3 444 69.4
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.7e-151 540.4 564 49.8
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 5.6e-150 535.4 423 65.2
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 5.6e-134 482.3 308 76.9
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 2.1e-117 427.2 346 58.7
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 4.9e-106 389.4 452 45.1
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 4.8e-101 372.9 562 37.7
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.6e-96 357.8 468 41.7
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.8e-85 320.5 220 74.1
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 1.5e-78 298.1 176 81.2
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 3.7e-77 293.5 250 61.6
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 8.5e-74 282.3 416 38.7
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.7e-69 268.1 202 60.9
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 4.1e-68 263.5 218 58.7
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 4.1e-68 263.5 218 58.7
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 3.6e-64 250.4 365 35.6
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.1e-62 245.4 171 66.7
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 8.8e-55 219.2 161 64.0
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 4.1e-44 183.7 230 46.1
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.2e-43 182.2 110 85.5
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.4e-28 131.3 72 83.3
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.5e-25 121.3 77 70.1
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 4.3e-25 120.6 73 72.6
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.2e-24 119.0 110 55.5
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.9e-17 95.1 105 52.4
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 5.2e-15 87.0 43 86.0
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 7.1e-12 76.6 49 67.3
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 7.1e-12 76.6 49 67.3
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 3.0e-10 71.2 48 62.5
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 1.5e-09 68.9 48 60.4
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 1.9e-09 68.6 42 71.4
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 6.2e-08 63.5 51 70.6


User provided reference genes

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