Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23482 Brassica carinata HOM05D002624 ORTHO05D002796 1.7e-45 185.7 92 100.0
Sp2g23990 Schrenkiella parvula HOM05D002624 ORTHO05D002796 3.8e-26 121.3 89 73.0
Thhalv10004348m.g Eutrema salsugineum HOM05D002624 ORTHO05D002796 6.5e-26 120.6 89 69.7
C07p44400 Brassica napus HOM05D002624 ORTHO05D002796 7.2e-25 117.1 87 70.1
BolC7t44962H Brassica oleracea HOM05D002624 ORTHO05D002796 7.2e-25 117.1 87 70.1
A03p46380 Brassica napus HOM05D002624 ORTHO05D002796 8.0e-24 113.6 87 70.1
BraA03t13764Z Brassica rapa HOM05D002624 ORTHO05D002796 8.0e-24 113.6 87 70.1
AL6G34320 Arabidopsis lyrata HOM05D002624 ORTHO05D002796 8.8e-23 110.2 88 68.2
Carub.0006s2092 Capsella rubella HOM05D002624 ORTHO05D002796 2.6e-22 108.6 93 66.7
AT5G23130 Arabidopsis thaliana HOM05D002624 ORTHO05D002796 4.4e-22 107.8 88 68.2
CARHR190400 Cardamine hirsuta HOM05D002624 ORTHO05D002796 4.4e-22 107.8 88 64.8
Aa31LG11G2620 Aethionema arabicum HOM05D002624 ORTHO05D002796 1.4e-20 102.8 88 63.6
Thhalv10013674m.g Eutrema salsugineum HOM05D002624 ORTHO05D002796 7.2e-17 90.5 88 58.0
A03p03680 Brassica napus HOM05D002624 ORTHO05D002796 4.7e-16 87.8 89 58.4
BraA03t09716Z Brassica rapa HOM05D002624 ORTHO05D002796 4.7e-16 87.8 89 58.4
AT5G08200 Arabidopsis thaliana HOM05D002624 ORTHO05D002796 6.1e-16 87.4 88 58.0
Sp6g34740 Schrenkiella parvula HOM05D002624 ORTHO05D002796 6.1e-16 87.4 88 56.8
Carub.0006s0710 Capsella rubella HOM05D002624 ORTHO05D002796 1.4e-15 86.3 88 56.8
AL6G18610 Arabidopsis lyrata HOM05D002624 ORTHO05D002796 1.8e-15 85.9 88 58.0
BolC3t12949H Brassica oleracea HOM05D002624 ORTHO05D002796 1.8e-15 85.9 89 57.3
BcaC03g13211 Brassica carinata HOM05D002624 ORTHO05D002796 2.3e-15 85.5 88 56.8
A10p28470 Brassica napus HOM05D002624 ORTHO05D002796 3.0e-15 85.1 88 53.4
BraA10t44895Z Brassica rapa HOM05D002624 ORTHO05D002796 3.0e-15 85.1 88 53.4
C09p68740 Brassica napus HOM05D002624 ORTHO05D002796 5.2e-15 84.3 88 53.4
BolC9t59621H Brassica oleracea HOM05D002624 ORTHO05D002796 5.2e-15 84.3 88 53.4
BcaB01g05622 Brassica carinata HOM05D002624 ORTHO05D002796 6.8e-15 84.0 89 56.2
C03p04170 Brassica napus HOM05D002624 ORTHO05D002796 6.8e-15 84.0 89 57.3
Aa31LG3G18340 Aethionema arabicum HOM05D002624 ORTHO05D002796 8.8e-15 83.6 88 55.7
BcaB08g37275 Brassica carinata HOM05D002624 ORTHO05D002796 8.8e-15 83.6 87 54.0
BcaNung05092 Brassica carinata HOM05D002624 ORTHO05D002796 2.0e-14 82.4 88 53.4
BcaNung05093 Brassica carinata HOM05D002624 ORTHO05D002796 2.0e-14 82.4 88 53.4
THA.LOC104819378 Tarenaya hassleriana HOM05D002624 ORTHO05D002796 2.2e-13 79.0 100 53.0
Ciclev10032391m.g Citrus clementina HOM05D002624 ORTHO05D002796 4.1e-12 74.7 91 50.5
CsaV3_3G031410 Cucumis sativus L. HOM05D002624 ORTHO05D002796 5.4e-12 74.3 85 44.7
BcaB06g27928 Brassica carinata HOM05D000933 ORTHO05D000820 7.0e-12 73.9 59 71.2
COL.COLO4_19601 Corchorus olitorius HOM05D002624 ORTHO05D002796 7.0e-12 73.9 90 50.0
Duzib248G0716 Durio zibethinus HOM05D002624 ORTHO05D002796 9.2e-12 73.6 93 47.3
PGSC0003DMG400010579 Solanum tuberosum HOM05D002624 ORTHO05D002796 9.2e-12 73.6 92 46.7
CiPaw.05G168900 Carya illinoinensis HOM05D002624 ORTHO05D002796 1.6e-11 72.8 91 44.0
Duzib052G0930 Durio zibethinus HOM05D002624 ORTHO05D002796 2.0e-11 72.4 84 45.2
Solyc02g014090.3 Solanum lycopersicum HOM05D002624 ORTHO05D002796 2.7e-11 72.0 92 46.7
Sopen02g003670 Solanum pennellii HOM05D002624 ORTHO05D002796 2.7e-11 72.0 92 46.7
Sabra05G0076900 Salix brachista HOM05D002624 ORTHO05D002796 3.5e-11 71.6 85 49.4
CSS0039901 Camellia sinensis var. sinensis HOM05D002624 ORTHO05D002796 4.5e-11 71.2 96 47.9
Glyma.20G003100 Glycine max HOM05D002624 ORTHO05D002796 4.5e-11 71.2 93 48.4
Gorai.013G070300 Gossypium raimondii HOM05D002624 ORTHO05D002796 4.5e-11 71.2 89 51.7
Gohir.D13G061800 Gossypium hirsutum HOM05D002624 ORTHO05D002796 5.9e-11 70.9 89 51.7
Lj2g0005161 Lotus japonicus HOM05D002624 ORTHO05D002796 5.9e-11 70.9 97 45.4
Phvul.003G005400 Phaseolus vulgaris HOM05D002624 ORTHO05D002796 5.9e-11 70.9 93 44.1
THA.LOC104800897 Tarenaya hassleriana HOM05D002624 ORTHO05D002796 5.9e-11 70.9 97 52.6
THA.LOC104818371 Tarenaya hassleriana HOM05D002624 ORTHO05D002796 5.9e-11 70.9 98 50.0
Rhsim09G0076300 Rhododendron simsii HOM05D002624 ORTHO05D002796 1.0e-10 70.1 85 43.5
Glyma.09G282400 Glycine max HOM05D002624 ORTHO05D002796 1.3e-10 69.7 93 47.3
Gohir.A13G060100 Gossypium hirsutum HOM05D002624 ORTHO05D002796 1.3e-10 69.7 89 50.6
Lalb_Chr10g0094991 Lupinus albus HOM05D002624 ORTHO05D002796 1.3e-10 69.7 84 50.0
QL03p046358 Quercus lobata HOM05D002624 ORTHO05D002796 1.3e-10 69.7 85 42.4
MELO3C024023.2 Cucumis melo HOM05D002624 ORTHO05D002796 1.7e-10 69.3 84 42.9
Lalb_Chr17g0337881 Lupinus albus HOM05D002624 ORTHO05D002796 1.7e-10 69.3 91 47.3
Thecc.02G160100 Theobroma cacao HOM05D002624 ORTHO05D002796 1.7e-10 69.3 84 46.4
VMungo0251G0947 Vigna mungo HOM05D002624 ORTHO05D002796 1.7e-10 69.3 93 43.0
CANSAT56G1621 Cannabis sativa HOM05D002624 ORTHO05D002796 2.3e-10 68.9 94 42.6
CAN.G157.28 Capsicum annuum HOM05D002624 ORTHO05D002796 2.3e-10 68.9 92 45.7
CiPaw.06G060600 Carya illinoinensis HOM05D002624 ORTHO05D002796 2.3e-10 68.9 84 44.0
Gohir.A03G164700 Gossypium hirsutum HOM05D002624 ORTHO05D002796 2.9e-10 68.6 95 46.3
Gohir.D02G187900 Gossypium hirsutum HOM05D002624 ORTHO05D002796 2.9e-10 68.6 95 46.3
Gorai.005G210600 Gossypium raimondii HOM05D002624 ORTHO05D002796 2.9e-10 68.6 95 46.3
Cc11_g02290 Coffea canephora HOM05D002624 ORTHO05D002796 3.8e-10 68.2 95 46.3
Sed0021624 Sechium edule HOM05D002624 ORTHO05D002796 5.0e-10 67.8 85 43.5
Ca_03381_v3 Cicer arietinum L. HOM05D002624 ORTHO05D002796 6.6e-10 67.4 85 44.7
Medtr1g037450 Medicago truncatula HOM05D002624 ORTHO05D002796 6.6e-10 67.4 87 48.3
CARHR204980 Cardamine hirsuta HOM05D002624 ORTHO05D002796 8.6e-10 67.0 65 56.9
Ca_12980_v3 Cicer arietinum L. HOM05D002624 ORTHO05D002796 8.6e-10 67.0 85 43.5
Oeu026902.1 Olea europaea HOM05D002624 ORTHO05D002796 1.1e-09 66.6 94 44.7
SGA_v2.0_scaffold88G27229 Striga asiatica HOM05D002624 ORTHO05D002796 1.1e-09 66.6 87 46.0
Cpa.g.sc0.146 Carica papaya HOM05D002624 ORTHO05D002796 1.5e-09 66.2 84 44.0
Duzib132G0519 Durio zibethinus HOM05D002624 ORTHO05D002796 1.5e-09 66.2 85 42.4
Psat6g099320 Pisum sativum HOM05D002624 ORTHO05D002796 1.9e-09 65.9 76 47.4
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 1.9e-09 65.9 95 44.2
Potri.007G071500 Populus trichocarpa HOM05D002624 ORTHO05D002796 2.5e-09 65.5 90 46.7
BcaB07g33337 Brassica carinata HOM05D002624 ORTHO05D002796 3.3e-09 65.1 45 73.3
Oeu028418.2 Olea europaea HOM05D002624 ORTHO05D002796 3.3e-09 65.1 94 44.7
TWI74G1308 Tripterygium wilfordii HOM05D002624 ORTHO05D002796 3.3e-09 65.1 89 42.7
arahy.Tifrunner.gnm1.ann1.14QP5E Arachis hypogaea HOM05D002624 ORTHO05D002796 4.3e-09 64.7 79 44.3
MSTRG.13686 Avicennia marina HOM05D002624 ORTHO05D002796 4.3e-09 64.7 94 43.6
ECA233G4240 Erigeron canadensis HOM05D002624 ORTHO05D002796 5.6e-09 64.3 82 42.7
MSTRG.8084 Avicennia marina HOM05D002624 ORTHO05D002796 7.3e-09 63.9 97 45.4
DCAR_002577 Daucus carota HOM05D002624 ORTHO05D002796 9.5e-09 63.5 92 41.3
Actinidia04323 Actinidia chinensis HOM05D002624 ORTHO05D002796 1.2e-08 63.2 90 43.3
PGR083G2331 Punica granatum HOM05D002624 ORTHO05D002796 1.2e-08 63.2 95 47.4
TAR629G1845 Trochodendron aralioides HOM05D002624 ORTHO05D002796 1.2e-08 63.2 87 40.2
Potri.005G092800 Populus trichocarpa HOM05D002624 ORTHO05D002796 1.6e-08 62.8 85 43.5
TPR.G8238 Trifolium pratense HOM05D002624 ORTHO05D002796 1.6e-08 62.8 75 44.0
Eucgr.H00642 Eucalyptus grandis HOM05D002624 ORTHO05D002796 2.1e-08 62.4 91 40.7
Atru.chr11.1151 Acer truncatum HOM05D002624 ORTHO05D002796 2.8e-08 62.0 85 44.7
arahy.Tifrunner.gnm1.ann1.7E86KB Arachis hypogaea HOM05D002624 ORTHO05D002796 2.8e-08 62.0 78 43.6
AUR62017697 Chenopodium quinoa HOM05D002624 ORTHO05D002796 2.8e-08 62.0 83 45.8
Manes.11G107501 Manihot esculenta HOM05D002624 ORTHO05D002796 2.8e-08 62.0 79 43.0
PSO782G1181 Papaver somniferum HOM05D002624 ORTHO05D002796 2.8e-08 62.0 87 39.1
AUR62015235 Chenopodium quinoa HOM05D002624 ORTHO05D002796 3.6e-08 61.6 83 45.8
Lj3C849T16 Lonicera japonica HOM05D002624 ORTHO05D002796 3.6e-08 61.6 85 44.7
MD13G1005700 Malus domestica HOM05D002624 ORTHO05D002796 3.6e-08 61.6 84 44.0
SGA_v2.0_scaffold187G40278 Striga asiatica HOM05D002624 ORTHO05D002796 3.6e-08 61.6 85 45.9
Eucgr.J00866 Eucalyptus grandis HOM05D002624 ORTHO05D002796 4.7e-08 61.2 90 41.1
PSO063G1158 Papaver somniferum HOM05D002624 ORTHO05D002796 4.7e-08 61.2 84 40.5
Sed0003440 Sechium edule HOM05D002624 ORTHO05D002796 4.7e-08 61.2 88 40.9
CARHR215540 Cardamine hirsuta HOM05D002624 ORTHO05D002796 6.1e-08 60.8 40 72.5
Migut.E00698 Erythranthe guttata HOM05D002624 ORTHO05D002796 6.1e-08 60.8 78 46.2
GSVIVG01029341001 Vitis vinifera HOM05D002624 ORTHO05D002796 8.0e-08 60.5 88 38.6
Aqoxy3G04257 Aquilegia oxysepala HOM05D002624 ORTHO05D002796 1.0e-07 60.1 83 42.2
BcaC03g13213 Brassica carinata HOM05D002624 ORTHO05D002796 1.0e-07 60.1 88 46.6
PGR044G2474 Punica granatum HOM05D002624 ORTHO05D002796 1.0e-07 60.1 79 48.1
HPP92_022487 Vanilla planifolia HOM05D002624 ORTHO05D002796 1.4e-07 59.7 86 40.7
Gohir.D01G013950 Gossypium hirsutum HOM05D002624 ORTHO05D002796 1.8e-07 59.3 88 43.2
Gorai.002G015700 Gossypium raimondii HOM05D002624 ORTHO05D002796 1.8e-07 59.3 88 43.2
Sc10g0006950 Simmondsia chinensis HOM05D002624 ORTHO05D002796 2.3e-07 58.9 91 41.8
Actinidia04060 Actinidia chinensis HOM05D002624 ORTHO05D002796 3.0e-07 58.5 90 40.0
CiPaw.06G060500 Carya illinoinensis HOM05D002624 ORTHO05D002796 3.0e-07 58.5 79 41.8
TWI77G0662 Tripterygium wilfordii HOM05D002624 ORTHO05D002796 3.0e-07 58.5 81 43.2
EL10Ac9g22947 Beta vulgaris HOM05D002624 ORTHO05D002796 4.0e-07 58.2 93 44.1
CiPaw.16G072300 Carya illinoinensis HOM05D002624 ORTHO05D002796 4.0e-07 58.2 87 43.7
Gohir.A12G133800 Gossypium hirsutum HOM05D002624 ORTHO05D002796 4.0e-07 58.2 84 41.7
MSTRG.2059 Avicennia marina HOM05D002624 ORTHO05D002796 5.2e-07 57.8 90 42.2
Gohir.A01G012638 Gossypium hirsutum HOM05D002624 ORTHO05D002796 5.2e-07 57.8 88 45.5
Prupe.1G347300 Prunus persica HOM05D002624 ORTHO05D002796 5.2e-07 57.8 90 42.2
BolC2t06307H Brassica oleracea HOM05D002624 ORTHO05D002796 6.8e-07 57.4 91 46.2
HanXRQChr13g0387751 Helianthus annuus HOM05D002624 ORTHO05D002796 6.8e-07 57.4 92 39.1
Cpa.g.sc467.2 Carica papaya HOM05D002624 ORTHO05D002796 8.9e-07 57.0 92 41.3
C02p03460 Brassica napus HOM05D002624 ORTHO05D002796 1.2e-06 56.6 88 44.3
Medtr6g077740 Medicago truncatula HOM05D002624 ORTHO05D002796 1.2e-06 56.6 93 40.9
Migut.L00860 Erythranthe guttata HOM05D002624 ORTHO05D002796 2.0e-06 55.8 92 39.1
Atru.chr9.105 Acer truncatum HOM05D002624 ORTHO05D002796 3.4e-06 55.1 104 38.5
Phvul.006G036300 Phaseolus vulgaris HOM05D002624 ORTHO05D002796 3.4e-06 55.1 91 44.0
PGSC0003DMG400039583 Solanum tuberosum HOM05D002624 ORTHO05D002796 3.4e-06 55.1 55 52.7
Manes.02G220300 Manihot esculenta HOM05D002624 ORTHO05D002796 4.4e-06 54.7 88 40.9
Psat1g121800 Pisum sativum HOM05D002624 ORTHO05D002796 4.4e-06 54.7 93 40.9
HanXRQChr12g0366391 Helianthus annuus HOM05D002624 ORTHO05D002796 5.7e-06 54.3 82 40.2
Hma1.2p1_0122F.1_g057570 Hydrangea macrophylla HOM05D002624 ORTHO05D002796 5.7e-06 54.3 96 38.5
Ah.01g012330 Amaranthus hybridus HOM05D002624 ORTHO05D002796 7.5e-06 53.9 83 42.2
Sed0024984 Sechium edule HOM05D002624 ORTHO05D002796 9.8e-06 53.5 84 41.7
Solyc11g039960.2 Solanum lycopersicum HOM05D002624 ORTHO05D002796 9.8e-06 53.5 95 41.1
Sopen11g017760 Solanum pennellii HOM05D002624 ORTHO05D002796 9.8e-06 53.5 95 41.1


User provided reference genes

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