Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 5.2e-194 681.0 379 100.0
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 1.1e-191 673.3 379 99.2
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 1.3e-189 666.4 406 93.3
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 1.4e-178 629.8 379 95.3
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 3.0e-170 602.1 381 91.1
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 5.4e-167 591.3 374 92.2
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 7.8e-166 587.4 408 85.0
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.2e-111 406.0 622 49.7
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.1e-110 403.3 623 46.1
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 2.8e-107 392.9 626 46.2
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 6.5e-104 381.7 631 45.3
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 1.4e-103 380.6 634 45.1
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.4e-101 374.0 618 46.9
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 2.6e-97 359.8 626 43.9
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 5.0e-96 355.5 625 45.6
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 1.6e-86 323.9 533 49.3
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.6e-86 323.9 547 45.2
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.0e-77 294.7 546 41.9
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 7.0e-58 228.8 658 36.5
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.4e-52 209.5 653 33.7
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.3e-47 193.4 271 55.7
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.1e-41 174.1 381 40.7
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.2e-22 111.7 251 38.6
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 9.0e-21 105.5 479 30.7
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 9.3e-18 95.5 301 39.5
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 4.6e-17 93.2 269 34.9
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 6.0e-17 92.8 382 30.1
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 1.0e-16 92.0 254 34.3
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.0e-16 92.0 376 31.9
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.3e-16 91.7 294 32.7
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 2.3e-16 90.9 414 30.9
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 3.9e-16 90.1 355 27.6
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 3.9e-16 90.1 320 31.2
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 6.6e-16 89.4 265 33.2
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 6.6e-16 89.4 269 33.1
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 8.7e-16 89.0 228 32.9
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 1.5e-15 88.2 191 41.9
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.9e-15 87.8 351 32.2
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 2.5e-15 87.4 325 33.5
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 2.5e-15 87.4 145 43.4
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 2.5e-15 87.4 269 32.3
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 7.3e-15 85.9 205 38.0
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 7.3e-15 85.9 181 40.9
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 7.3e-15 85.9 178 39.9
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 1.3e-14 85.1 470 28.1
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.3e-14 85.1 294 33.7
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 2.1e-14 84.3 373 31.9
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 2.8e-14 84.0 260 34.6
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 3.6e-14 83.6 328 29.3
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.6e-14 83.6 327 32.1
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.6e-14 83.6 327 32.1
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 3.6e-14 83.6 347 30.8
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 4.8e-14 83.2 327 32.1
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 6.2e-14 82.8 352 36.1
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 6.2e-14 82.8 307 30.6
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 8.1e-14 82.4 194 39.2
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.1e-13 82.0 220 35.0
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 1.4e-13 81.6 184 40.2
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 1.4e-13 81.6 192 39.1
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.4e-13 81.6 154 40.3
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.8e-13 81.3 383 30.3
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.4e-13 80.9 321 31.5
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 5.3e-13 79.7 349 30.1
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.3e-13 79.7 329 30.7
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 6.9e-13 79.3 267 30.3
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 6.9e-13 79.3 185 42.2
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 9.0e-13 79.0 371 30.5
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 9.0e-13 79.0 189 36.5
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 9.0e-13 79.0 172 43.0
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 1.2e-12 78.6 400 30.5
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.0e-12 77.8 254 33.5
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 2.0e-12 77.8 289 33.9
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 2.6e-12 77.4 249 34.1
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 2.6e-12 77.4 189 41.8
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.6e-12 77.4 178 38.8
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 3.4e-12 77.0 258 32.2
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 4.5e-12 76.6 326 28.2
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 4.5e-12 76.6 177 37.9
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 5.8e-12 76.3 241 32.0
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 7.6e-12 75.9 215 34.9
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 9.9e-12 75.5 176 37.5
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.3e-11 75.1 289 33.6
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 1.3e-11 75.1 382 29.8
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.7e-11 74.7 163 38.7
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.7e-11 74.7 195 36.9
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 2.2e-11 74.3 312 28.5
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 2.9e-11 73.9 199 36.2
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 3.8e-11 73.6 209 35.4
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.8e-11 73.6 397 28.0
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 4.9e-11 73.2 375 29.3
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 4.9e-11 73.2 396 27.0
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 4.9e-11 73.2 390 30.5
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.1e-10 72.0 149 39.6
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.4e-10 71.6 283 32.2
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.4e-10 71.6 243 35.4
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 1.9e-10 71.2 369 28.2
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 2.4e-10 70.9 375 29.1
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.4e-10 70.9 373 28.7
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 3.2e-10 70.5 289 28.4
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 3.2e-10 70.5 318 30.2
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 3.2e-10 70.5 221 34.8
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 4.2e-10 70.1 178 38.2
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 9.3e-10 68.9 258 31.8
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.6e-09 68.2 176 33.0
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.6e-09 68.2 439 29.6
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.6e-09 68.2 155 38.7
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 1.6e-09 68.2 220 32.3
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 2.1e-09 67.8 214 33.6
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 2.7e-09 67.4 297 29.0
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 2.7e-09 67.4 395 26.1
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.5e-09 67.0 285 30.5
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 6.0e-09 66.2 162 38.3
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 6.0e-09 66.2 304 30.3
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 7.9e-09 65.9 254 32.3
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.0e-08 65.5 304 29.9
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.0e-08 65.5 429 27.3
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.0e-08 65.5 212 34.0
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 1.3e-08 65.1 174 40.2
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 1.8e-08 64.7 156 37.8
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 1.8e-08 64.7 156 37.8
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 5.1e-08 63.2 142 41.5
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 5.1e-08 63.2 141 41.8
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 5.1e-08 63.2 320 28.8
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 6.7e-08 62.8 379 30.1
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.1e-07 62.0 428 25.5
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 1.1e-07 62.0 207 28.5
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 1.5e-07 61.6 283 31.4
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 1.9e-07 61.2 320 29.1
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.9e-07 61.2 281 31.3
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 2.5e-07 60.8 404 27.7
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 2.5e-07 60.8 270 31.5
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 3.3e-07 60.5 368 26.9
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.3e-06 58.5 174 32.8
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.6e-06 58.2 165 30.3
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.6e-06 58.2 333 29.7
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 2.1e-06 57.8 159 34.0
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 2.8e-06 57.4 157 33.8
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 2.8e-06 57.4 292 31.2
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 2.8e-06 57.4 96 46.9
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 4.8e-06 56.6 277 29.6
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 6.2e-06 56.2 427 25.8


User provided reference genes

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