Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23414 Brassica carinata HOM05D003700 ORTHO05D004160 2.6e-42 174.9 83 100.0
C09p08590 Brassica napus HOM05D003700 ORTHO05D004160 1.2e-23 112.8 55 96.4
BcaB07g29837 Brassica carinata HOM05D003700 ORTHO05D004160 9.7e-21 103.2 67 76.1
BcaC03g18149 Brassica carinata HOM05D003700 ORTHO05D004160 2.2e-20 102.1 67 74.6
A02p42310 Brassica napus HOM05D003700 ORTHO05D004160 2.2e-20 102.1 67 74.6
C02p62180 Brassica napus HOM05D003700 ORTHO05D004160 2.2e-20 102.1 67 74.6
BolC2t12276H Brassica oleracea HOM05D003700 ORTHO05D004160 2.2e-20 102.1 67 74.6
BraA02t09160Z Brassica rapa HOM05D003700 ORTHO05D004160 2.2e-20 102.1 67 74.6
Sp2g25630 Schrenkiella parvula HOM05D003700 ORTHO05D004160 2.8e-20 101.7 67 74.6
BraA09t36419Z Brassica rapa HOM05D003700 ORTHO05D004160 2.4e-19 98.6 55 89.1
AL8G39330 Arabidopsis lyrata HOM05D003700 ORTHO05D004160 5.3e-19 97.4 67 70.1
BcaC01g02471 Brassica carinata HOM05D003700 ORTHO05D004160 5.3e-19 97.4 68 72.1
A06p29150 Brassica napus HOM05D003700 ORTHO05D004160 5.3e-19 97.4 68 72.1
C03p64440 Brassica napus HOM05D003700 ORTHO05D004160 5.3e-19 97.4 68 72.1
BolC3t18700H Brassica oleracea HOM05D003700 ORTHO05D004160 5.3e-19 97.4 68 72.1
BraA06t25863Z Brassica rapa HOM05D003700 ORTHO05D004160 5.3e-19 97.4 68 72.1
Carub.0008s2312 Capsella rubella HOM05D003700 ORTHO05D004160 5.3e-19 97.4 68 70.6
BcaB02g09647 Brassica carinata HOM05D003700 ORTHO05D004160 1.2e-18 96.3 67 71.6
AT5G62440 Arabidopsis thaliana HOM05D003700 ORTHO05D004160 1.6e-18 95.9 67 70.1
CARHR276240 Cardamine hirsuta HOM05D003700 ORTHO05D004160 5.0e-17 90.9 66 68.2
Lalb_Chr23g0273811 Lupinus albus HOM05D003700 ORTHO05D004160 4.7e-15 84.3 70 58.6
Cfa018940 Carpinus fangiana HOM05D003700 ORTHO05D004160 6.1e-15 84.0 79 58.2
THA.LOC104821421 Tarenaya hassleriana HOM05D003700 ORTHO05D004160 6.1e-15 84.0 68 63.2
BolC9t53768H Brassica oleracea HOM05D003700 ORTHO05D004160 2.3e-14 82.0 55 76.4
Aa31LG11G1190 Aethionema arabicum HOM05D003700 ORTHO05D004160 3.0e-14 81.6 67 61.2
Potri.013G022500 Populus trichocarpa HOM05D003700 ORTHO05D004160 5.2e-14 80.9 98 54.1
Sabra05G0035300 Salix brachista HOM05D003700 ORTHO05D004160 5.2e-14 80.9 74 58.1
Aa31LG4G16330 Aethionema arabicum HOM05D003700 ORTHO05D004160 6.8e-14 80.5 70 58.6
FvH4_5g14920 Fragaria vesca HOM05D003700 ORTHO05D004160 1.5e-13 79.3 69 60.9
FAN04G3111 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.5e-13 79.3 69 60.9
FAN08G2213 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.5e-13 79.3 69 60.9
FAN13G0273 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.5e-13 79.3 69 60.9
Glyma.06G194200 Glycine max HOM05D003700 ORTHO05D004160 2.0e-13 79.0 57 66.7
Phvul.009G187000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 2.6e-13 78.6 73 57.5
Atru.chr9.273 Acer truncatum HOM05D003700 ORTHO05D004160 3.4e-13 78.2 84 54.8
Ciclev10022133m.g Citrus clementina HOM05D003700 ORTHO05D004160 3.4e-13 78.2 76 56.6
Haze_07324 Corylus avellana HOM05D003700 ORTHO05D004160 3.4e-13 78.2 81 56.8
FAN13G0167 Fragaria x ananassa HOM05D003700 ORTHO05D004160 3.4e-13 78.2 69 59.4
Glyma.04G169200 Glycine max HOM05D003700 ORTHO05D004160 3.4e-13 78.2 71 57.7
Potri.005G033100 Populus trichocarpa HOM05D003700 ORTHO05D004160 3.4e-13 78.2 72 58.3
Duzib205G1944 Durio zibethinus HOM05D003700 ORTHO05D004160 4.4e-13 77.8 85 56.5
Gohir.A11G031331 Gossypium hirsutum HOM05D003700 ORTHO05D004160 4.4e-13 77.8 71 57.7
MD06G1193500 Malus domestica HOM05D003700 ORTHO05D004160 4.4e-13 77.8 73 56.2
PSO013G0046 Papaver somniferum HOM05D003700 ORTHO05D004160 4.4e-13 77.8 71 57.7
PSO832G2691 Papaver somniferum HOM05D003700 ORTHO05D004160 4.4e-13 77.8 71 57.7
Ca_13772_v3 Cicer arietinum L. HOM05D003700 ORTHO05D004160 5.7e-13 77.4 81 56.8
Prupe.5G193800 Prunus persica HOM05D003700 ORTHO05D004160 5.7e-13 77.4 73 54.8
FAN18G4275 Fragaria x ananassa HOM05D003700 ORTHO05D004160 7.5e-13 77.0 69 59.4
MD14G1200600 Malus domestica HOM05D003700 ORTHO05D004160 7.5e-13 77.0 73 56.2
RcHm_v2.0_Chr7g0181461 Rosa chinensis HOM05D003700 ORTHO05D004160 7.5e-13 77.0 69 59.4
Nitab4.5_0007189g0070 Nicotiana tabacum HOM05D003700 ORTHO05D004160 9.8e-13 76.6 86 51.2
Atru.chr11.2689 Acer truncatum HOM05D003700 ORTHO05D004160 1.7e-12 75.9 73 58.9
Eucgr.B00508 Eucalyptus grandis HOM05D003700 ORTHO05D004160 1.7e-12 75.9 76 56.6
Gohir.D11G035000 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.7e-12 75.9 87 55.2
HanXRQChr04g0107321 Helianthus annuus HOM05D003700 ORTHO05D004160 1.7e-12 75.9 72 61.1
Medtr0140s0050 Medicago truncatula HOM05D003700 ORTHO05D004160 2.2e-12 75.5 65 60.0
QL10p017042 Quercus lobata HOM05D003700 ORTHO05D004160 2.2e-12 75.5 58 63.8
Sabra13G0024600 Salix brachista HOM05D003700 ORTHO05D004160 2.2e-12 75.5 58 65.5
TWI81G0244 Tripterygium wilfordii HOM05D003700 ORTHO05D004160 2.8e-12 75.1 71 54.9
Sc12g0006380 Simmondsia chinensis HOM05D003700 ORTHO05D004160 3.7e-12 74.7 85 55.3
TPR.G11909 Trifolium pratense HOM05D003700 ORTHO05D004160 3.7e-12 74.7 83 53.0
GSVIVG01007999001 Vitis vinifera HOM05D003700 ORTHO05D004160 3.7e-12 74.7 69 58.0
Cc04_g16600 Coffea canephora HOM05D003700 ORTHO05D004160 4.8e-12 74.3 82 56.1
Hma1.2p1_1936F.1_g308180 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 4.8e-12 74.3 73 57.5
Medtr3g435580 Medicago truncatula HOM05D003700 ORTHO05D004160 4.8e-12 74.3 71 54.9
A09p07680 Brassica napus HOM05D003700 ORTHO05D004160 6.3e-12 73.9 37 86.5
DCAR_016563 Daucus carota HOM05D003700 ORTHO05D004160 6.3e-12 73.9 71 56.3
DCAR_021520 Daucus carota HOM05D003700 ORTHO05D004160 6.3e-12 73.9 70 57.1
VMungo1309G1081 Vigna mungo HOM05D003700 ORTHO05D004160 8.3e-12 73.6 71 52.1
COL.COLO4_35537 Corchorus olitorius HOM05D003700 ORTHO05D004160 1.1e-11 73.2 78 52.6
CiPaw.11G044800 Carya illinoinensis HOM05D003700 ORTHO05D004160 1.4e-11 72.8 75 56.0
ECA247G0346 Erigeron canadensis HOM05D003700 ORTHO05D004160 1.4e-11 72.8 71 56.3
PGR083G2029 Punica granatum HOM05D003700 ORTHO05D004160 1.4e-11 72.8 70 58.6
Gohir.A11G031511 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.8e-11 72.4 87 52.9
Gorai.007G037700 Gossypium raimondii HOM05D003700 ORTHO05D004160 1.8e-11 72.4 87 52.9
Lj4g0000044 Lotus japonicus HOM05D003700 ORTHO05D004160 1.8e-11 72.4 74 56.8
Lalb_Chr08g0235721 Lupinus albus HOM05D003700 ORTHO05D004160 1.8e-11 72.4 73 52.1
Nitab4.5_0011015g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 1.8e-11 72.4 88 52.3
unitig_62.g23549 Utricularia gibba HOM05D003700 ORTHO05D004160 1.8e-11 72.4 58 63.8
Aqoxy3G03389 Aquilegia oxysepala HOM05D003700 ORTHO05D004160 2.4e-11 72.0 71 54.9
Dinv38714 Davidia involucrata HOM05D003700 ORTHO05D004160 2.4e-11 72.0 61 60.7
Lalb_Chr07g0178061 Lupinus albus HOM05D003700 ORTHO05D004160 2.4e-11 72.0 87 50.6
Gorai.003G097200 Gossypium raimondii HOM05D003700 ORTHO05D004160 3.1e-11 71.6 58 55.2
Nn3g17245 Nelumbo nucifera HOM05D003700 ORTHO05D004160 3.1e-11 71.6 77 51.9
CAN.G837.20 Capsicum annuum HOM05D003700 ORTHO05D004160 4.1e-11 71.2 69 53.6
ClCG06G016210 Citrullus lanatus HOM05D003700 ORTHO05D004160 4.1e-11 71.2 73 54.8
Glyma.05G026600 Glycine max HOM05D003700 ORTHO05D004160 4.1e-11 71.2 78 51.3
Lsat_1_v5_gn_1_13920 Lactuca sativa HOM05D003700 ORTHO05D004160 4.1e-11 71.2 94 52.1
Os03g0187000 Oryza sativa ssp. japonica HOM05D003700 ORTHO05D004160 4.1e-11 71.2 78 52.6
Sc04g0002660 Simmondsia chinensis HOM05D003700 ORTHO05D004160 4.1e-11 71.2 73 53.4
TAR633G2224 Trochodendron aralioides HOM05D003700 ORTHO05D004160 4.1e-11 71.2 96 45.8
CANSAT56G3341 Cannabis sativa HOM05D003700 ORTHO05D004160 5.4e-11 70.9 73 54.8
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 5.4e-11 70.9 60 58.3
Dinv19966 Davidia involucrata HOM05D003700 ORTHO05D004160 5.4e-11 70.9 78 55.1
Gohir.A03G066800 Gossypium hirsutum HOM05D003700 ORTHO05D004160 5.4e-11 70.9 69 49.3
Gohir.D03G093300 Gossypium hirsutum HOM05D003700 ORTHO05D004160 5.4e-11 70.9 68 48.5
Nitab4.5_0006000g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 5.4e-11 70.9 68 52.9
TAR622G0031 Trochodendron aralioides HOM05D003700 ORTHO05D004160 5.4e-11 70.9 97 50.5
VMungo1215G2263 Vigna mungo HOM05D003700 ORTHO05D004160 5.4e-11 70.9 87 50.6
Actinidia04888 Actinidia chinensis HOM05D003700 ORTHO05D004160 7.0e-11 70.5 72 54.2
Actinidia37626 Actinidia chinensis HOM05D003700 ORTHO05D004160 7.0e-11 70.5 72 54.2
ATR1127G116 Amborella trichopoda HOM05D003700 ORTHO05D004160 7.0e-11 70.5 58 62.1
Gohir.D11G034700 Gossypium hirsutum HOM05D003700 ORTHO05D004160 7.0e-11 70.5 86 52.3
Sopen03g035010 Solanum pennellii HOM05D003700 ORTHO05D004160 7.0e-11 70.5 68 52.9
PGSC0003DMG400019531 Solanum tuberosum HOM05D003700 ORTHO05D004160 7.0e-11 70.5 68 52.9
TAR371G1074 Trochodendron aralioides HOM05D003700 ORTHO05D004160 7.0e-11 70.5 78 51.3
Ca_21822_v3 Cicer arietinum L. HOM05D003700 ORTHO05D004160 1.2e-10 69.7 71 54.9
MELO3C017173.2 Cucumis melo HOM05D003700 ORTHO05D004160 1.2e-10 69.7 73 52.1
CsaV3_1G002330 Cucumis sativus L. HOM05D003700 ORTHO05D004160 1.2e-10 69.7 58 58.6
Gorai.007G037600 Gossypium raimondii HOM05D003700 ORTHO05D004160 1.6e-10 69.3 87 50.6
Lj1g0000196 Lotus japonicus HOM05D003700 ORTHO05D004160 1.6e-10 69.3 82 48.8
Nitab4.5_0002078g0040 Nicotiana tabacum HOM05D003700 ORTHO05D004160 1.6e-10 69.3 69 50.7
Lj5A110T129 Lonicera japonica HOM05D003700 ORTHO05D004160 2.0e-10 68.9 76 52.6
SalBow7G0736 Salvia bowleyana HOM05D003700 ORTHO05D004160 2.0e-10 68.9 58 58.6
SEGI_41222 Sequoiadendron giganteum HOM05D003700 ORTHO05D004160 2.0e-10 68.9 82 51.2
HPP92_005935 Vanilla planifolia HOM05D003700 ORTHO05D004160 2.0e-10 68.9 81 51.9
Zm00001eb401550 Zea mays HOM05D003700 ORTHO05D004160 2.0e-10 68.9 66 53.0
Nitab4.5_0001128g0150 Nicotiana tabacum HOM05D003700 ORTHO05D004160 2.7e-10 68.6 66 51.5
vmacro11460 Vaccinium macrocarpon HOM05D003700 ORTHO05D004160 2.7e-10 68.6 69 55.1
CDE08G0283 Ceratophyllum demersum HOM05D003700 ORTHO05D004160 3.5e-10 68.2 60 56.7
Oeu047295.1 Olea europaea HOM05D003700 ORTHO05D004160 3.5e-10 68.2 58 60.3
SGA_v2.0_scaffold114G31908 Striga asiatica HOM05D003700 ORTHO05D004160 3.5e-10 68.2 71 52.1
arahy.Tifrunner.gnm1.ann1.Y09UDZ Arachis hypogaea HOM05D003700 ORTHO05D004160 4.5e-10 67.8 79 50.6
Manes.06G092100 Manihot esculenta HOM05D003700 ORTHO05D004160 4.5e-10 67.8 68 55.9
arahy.Tifrunner.gnm1.ann1.N073K6 Arachis hypogaea HOM05D003700 ORTHO05D004160 5.9e-10 67.4 71 49.3
CAN.G587.1 Capsicum annuum HOM05D003700 ORTHO05D004160 5.9e-10 67.4 83 50.6
Psat5g193120 Pisum sativum HOM05D003700 ORTHO05D004160 5.9e-10 67.4 82 50.0
Solyc03g116020.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 5.9e-10 67.4 68 51.5
PGSC0003DMG400033045 Solanum tuberosum HOM05D003700 ORTHO05D004160 5.9e-10 67.4 83 49.4
Peaxi162Scf00013g00333 Petunia axillaris HOM05D003700 ORTHO05D004160 7.7e-10 67.0 78 51.3
Sed0020544 Sechium edule HOM05D003700 ORTHO05D004160 7.7e-10 67.0 75 52.0
Hund02648 Selenicereus undatus HOM05D003700 ORTHO05D004160 7.7e-10 67.0 73 47.9
Solyc06g069770.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 7.7e-10 67.0 83 48.2
TAR622G0407 Trochodendron aralioides HOM05D003700 ORTHO05D004160 7.7e-10 67.0 73 53.4
MSTRG.9629 Avicennia marina HOM05D003700 ORTHO05D004160 1.0e-09 66.6 78 50.0
HanXRQChr02g0043591 Helianthus annuus HOM05D003700 ORTHO05D004160 1.0e-09 66.6 77 51.9
Glyma.17G100300 Glycine max HOM05D003700 ORTHO05D004160 1.3e-09 66.2 83 50.6
SGA_v2.0_scaffold7G04064 Striga asiatica HOM05D003700 ORTHO05D004160 1.3e-09 66.2 71 52.1
Thecc.03G087800 Theobroma cacao HOM05D003700 ORTHO05D004160 1.3e-09 66.2 78 50.0
TAR381G1035 Trochodendron aralioides HOM05D003700 ORTHO05D004160 1.3e-09 66.2 78 48.7
EL10Ac5g11021 Beta vulgaris HOM05D003700 ORTHO05D004160 1.7e-09 65.9 75 50.7
MBI17_g39902_MAGBIO Magnolia biondii HOM05D003700 ORTHO05D004160 2.9e-09 65.1 86 48.8
Sopen06g027060 Solanum pennellii HOM05D003700 ORTHO05D004160 3.8e-09 64.7 83 47.0
Phvul.003G190000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 5.0e-09 64.3 98 44.9
Sed0006743 Sechium edule HOM05D003700 ORTHO05D004160 6.5e-09 63.9 78 50.0
arahy.Tifrunner.gnm1.ann1.6Q68A3 Arachis hypogaea HOM05D003700 ORTHO05D004160 1.1e-08 63.2 95 47.4
Migut.D01816 Erythranthe guttata HOM05D003700 ORTHO05D004160 1.1e-08 63.2 85 47.1
arahy.Tifrunner.gnm1.ann1.4WDU0A Arachis hypogaea HOM05D003700 ORTHO05D004160 1.5e-08 62.8 95 46.3
Psat4g050880 Pisum sativum HOM05D003700 ORTHO05D004160 1.5e-08 62.8 71 49.3
Zm00001eb006550 Zea mays HOM05D003700 ORTHO05D004160 2.5e-08 62.0 80 45.0
Mapoly0139s0003 Marchantia polymorpha HOM05D003700 ORTHO05D004160 5.5e-08 60.8 97 39.2
SMO141G0011 Selaginella moellendorffii HOM05D003700 ORTHO05D004160 1.2e-07 59.7 75 48.0
CBR_g54107 Chara braunii HOM05D003700 ORTHO05D004160 2.7e-07 58.5 69 46.4
TPR.G9264 Trifolium pratense HOM05D003700 ORTHO05D004160 6.1e-07 57.4 82 47.6
CBR_g38730 Chara braunii HOM05D003700 ORTHO05D004160 8.0e-07 57.0 69 44.9
AagrBONN_evm.TU.Sc2ySwM_228.5404 Anthoceros agrestis HOM05D003700 ORTHO05D004160 5.2e-06 54.3 54 50.0


User provided reference genes

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