Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 5.9e-264 913.7 471 100.0
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 5.9e-264 913.7 471 100.0
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.4e-262 909.1 471 99.6
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 7.7e-256 886.7 471 96.2
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 2.6e-251 871.7 471 95.5
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 2.6e-251 871.7 471 95.5
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.1e-249 866.3 471 94.9
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 2.4e-249 865.1 459 97.6
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 4.1e-249 864.4 471 94.7
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 4.1e-249 864.4 471 94.1
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 7.0e-249 863.6 459 97.4
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 7.0e-249 863.6 471 94.5
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.6e-248 862.4 471 94.3
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 2.2e-247 858.6 464 94.8
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.2e-245 852.8 474 93.0
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.0e-244 849.7 471 92.4
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 8.8e-244 846.7 471 92.4
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 3.7e-242 841.3 464 93.3
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.5e-238 829.3 480 89.4
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.3e-231 806.2 473 86.3
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.0e-228 795.0 476 83.6
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.6e-219 765.4 465 83.0
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 9.8e-219 763.5 465 82.8
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.3e-218 763.1 461 82.9
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.7e-218 762.7 443 85.3
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 4.9e-218 761.1 463 81.4
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 7.0e-217 757.3 460 82.8
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.7e-216 755.4 439 90.4
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.7e-216 755.4 441 85.3
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 2.7e-216 755.4 441 85.0
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 2.7e-216 755.4 456 82.9
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 4.6e-216 754.6 455 82.9
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 3.9e-215 751.5 464 80.6
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 5.0e-215 751.1 460 81.7
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 6.6e-215 750.7 463 81.6
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.5e-214 749.6 443 83.7
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 2.5e-214 748.8 436 85.1
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 4.3e-214 748.0 449 83.7
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 9.5e-214 746.9 432 85.4
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 3.6e-213 745.0 443 83.5
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 4.7e-213 744.6 432 85.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.1e-212 743.4 445 82.5
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 3.1e-212 741.9 439 83.6
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 6.8e-212 740.7 439 83.1
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 6.8e-212 740.7 453 81.2
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 6.8e-212 740.7 439 82.9
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.6e-211 738.8 443 81.7
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 2.6e-211 738.8 438 84.0
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 3.4e-211 738.4 443 82.6
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 4.4e-211 738.0 439 83.1
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 7.5e-211 737.3 443 83.5
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 7.5e-211 737.3 443 82.4
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.7e-210 736.1 443 82.4
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.9e-210 735.3 440 82.3
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 2.9e-210 735.3 450 82.2
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 8.3e-210 733.8 443 82.2
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 8.3e-210 733.8 443 82.2
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.1e-209 733.4 443 81.9
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.1e-209 733.4 446 81.2
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 2.4e-209 732.3 461 79.6
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 2.4e-209 732.3 456 80.0
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 9.2e-209 730.3 439 82.7
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 1.2e-208 729.9 459 79.5
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.6e-208 729.6 435 83.0
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.6e-208 729.6 452 80.5
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.1e-208 729.2 445 81.6
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 2.1e-208 729.2 460 78.5
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.7e-208 728.8 439 81.3
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 2.7e-208 728.8 439 82.5
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.7e-208 728.8 443 81.3
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.5e-208 728.4 457 79.9
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 3.5e-208 728.4 440 81.8
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 7.8e-208 727.2 458 79.3
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 7.8e-208 727.2 440 81.6
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.3e-207 726.5 443 80.8
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 2.3e-207 725.7 459 79.3
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 6.6e-207 724.2 463 78.2
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 6.6e-207 724.2 440 81.1
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 3.3e-206 721.8 440 80.9
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 3.3e-206 721.8 440 81.1
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 5.6e-206 721.1 439 81.1
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 5.6e-206 721.1 441 81.0
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 1.2e-205 719.9 449 80.2
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 2.1e-205 719.2 436 81.7
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 2.1e-205 719.2 436 81.7
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.8e-205 718.8 458 79.5
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.1e-204 716.8 437 81.5
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.1e-204 716.8 458 79.7
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.4e-204 715.7 426 82.6
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 2.4e-204 715.7 434 81.3
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 3.1e-204 715.3 443 79.0
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 4.0e-204 714.9 462 77.7
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 8.9e-204 713.8 437 80.1
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 2.0e-203 712.6 450 79.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.4e-203 711.4 437 79.9
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 9.9e-203 710.3 435 80.0
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 2.9e-202 708.8 436 80.3
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.9e-201 706.1 435 79.5
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.9e-201 706.1 435 79.8
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.6e-200 703.0 431 80.5
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.6e-200 703.0 441 79.4
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.1e-200 702.6 431 80.5
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.1e-200 702.6 457 77.7
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 2.7e-200 702.2 490 73.3
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 7.8e-200 700.7 439 79.5
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.0e-199 700.3 452 77.4
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.3e-199 699.9 438 80.6
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 6.6e-199 697.6 449 77.7
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 2.5e-198 695.7 442 76.9
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 7.3e-198 694.1 457 77.2
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.6e-198 693.7 439 78.1
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 2.1e-197 692.6 431 79.4
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 3.1e-196 688.7 443 78.6
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 4.9e-194 681.4 437 77.8
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 3.2e-193 678.7 413 81.1
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 8.7e-191 670.6 448 73.7
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.8e-187 657.9 388 83.5
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 6.9e-180 634.4 468 67.5
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 1.8e-175 619.8 437 71.4
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.9e-174 616.3 432 70.8
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 3.7e-173 612.1 474 66.7
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 8.2e-173 610.9 427 71.9
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 8.7e-167 590.9 434 67.7
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 1.8e-164 583.2 426 68.8
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.4e-164 582.8 350 81.7
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 2.9e-162 575.9 453 64.9
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 7.9e-160 567.8 484 65.1
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.2e-154 549.7 428 66.6
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.2e-147 527.3 318 82.4
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 7.7e-147 524.6 315 82.9
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.8e-118 427.9 447 50.8
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.5e-113 414.1 330 66.4
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.9e-113 413.7 258 81.0
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 4.3e-113 412.5 273 75.5
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.2e-110 404.4 289 72.3
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.7e-109 400.6 232 84.5
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.5e-107 392.9 258 75.6
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.6e-88 329.7 405 51.4
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 8.9e-87 325.1 229 72.9
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 2.4e-84 317.0 201 78.6
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 9.2e-84 315.1 178 86.0
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.7e-82 310.8 180 82.2
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.5e-73 281.2 223 70.0
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 4.3e-73 279.6 218 69.7
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 2.1e-72 277.3 223 68.6
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 1.8e-71 274.2 245 64.5
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.3e-69 268.1 182 74.7
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 7.1e-68 262.3 401 41.1
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.6e-67 261.2 222 61.7
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 8.7e-66 255.4 221 64.3
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.6e-64 251.1 295 48.1
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 4.3e-57 226.5 125 85.6
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.8e-50 204.5 116 84.5
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 1.5e-41 174.9 188 53.7
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.5e-38 163.3 136 62.5
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 3.2e-36 157.1 91 82.4
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.1e-28 132.1 158 48.1
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 4.7e-27 126.7 212 43.9
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.0e-25 121.3 133 45.1
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 9.1e-23 112.5 148 49.3
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.3e-21 108.6 67 82.1
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.8e-21 107.1 125 51.2
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 6.5e-21 106.3 78 65.4
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 5.7e-17 93.2 64 71.9
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.7e-16 91.7 51 92.2
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.1e-15 89.0 57 78.9
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 3.1e-15 87.4 66 66.7
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.2e-14 85.5 79 54.4
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.9e-12 78.2 46 87.0
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 3.6e-11 73.9 48 79.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.8e-10 71.6 69 60.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 8.8e-10 69.3 69 60.9
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 3.4e-09 67.4 49 67.3
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 3.7e-08 63.9 37 83.8
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 3.1e-07 60.8 51 66.7
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 1.6e-06 58.5 31 83.9
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 5.9e-06 56.6 78 47.4


User provided reference genes

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