Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23346 Brassica carinata HOM05D007769 ORTHO05D009588 1.9e-31 138.7 77 100.0
BcaNung04624 Brassica carinata HOM05D007769 ORTHO05D009588 9.6e-31 136.3 77 94.8
A09p08470 Brassica napus HOM05D007769 ORTHO05D009588 2.6e-28 128.3 72 98.6
C09p09600 Brassica napus HOM05D007769 ORTHO05D009588 2.6e-28 128.3 72 100.0
BolC9t53870H Brassica oleracea HOM05D007769 ORTHO05D009588 2.6e-28 128.3 72 100.0
BraA09t36497Z Brassica rapa HOM05D007769 ORTHO05D009588 2.6e-28 128.3 72 98.6
CARHR277820 Cardamine hirsuta HOM05D007769 ORTHO05D009588 1.0e-27 126.3 77 89.6
Aa31LG2G19320 Aethionema arabicum HOM05D007769 ORTHO05D009588 1.4e-26 122.5 77 85.7
Carub.0008s2472 Capsella rubella HOM05D007769 ORTHO05D009588 1.3e-24 115.9 77 83.1
THA.LOC104825778 Tarenaya hassleriana HOM05D007769 ORTHO05D009588 1.3e-22 109.4 75 77.3
AT5G63905 Arabidopsis thaliana HOM05D007769 ORTHO05D009588 1.1e-21 106.3 77 76.6
Potri.014G015866 Populus trichocarpa HOM05D007769 ORTHO05D009588 2.0e-20 102.1 77 71.4
Manes.05G182100 Manihot esculenta HOM05D007769 ORTHO05D009588 2.6e-20 101.7 75 72.0
Potri.002G118366 Populus trichocarpa HOM05D007769 ORTHO05D009588 3.4e-20 101.3 77 71.4
Atru.chr13.834 Acer truncatum HOM05D007769 ORTHO05D009588 5.9e-20 100.5 77 71.4
AL8G41140 Arabidopsis lyrata HOM05D007769 ORTHO05D009588 5.9e-20 100.5 77 74.0
Gohir.D01G110800 Gossypium hirsutum HOM05D007769 ORTHO05D009588 1.7e-19 99.0 75 69.3
Sp2g26970 Schrenkiella parvula HOM05D007769 ORTHO05D009588 2.2e-19 98.6 77 72.7
TWI12G0690 Tripterygium wilfordii HOM05D007769 ORTHO05D009588 2.2e-19 98.6 75 72.0
COL.COLO4_28504 Corchorus olitorius HOM05D007769 ORTHO05D009588 5.0e-19 97.4 75 68.0
Ciclev10003023m.g Citrus clementina HOM05D007769 ORTHO05D009588 6.5e-19 97.1 72 73.6
Thhalv10005134m.g Eutrema salsugineum HOM05D007769 ORTHO05D009588 8.5e-19 96.7 77 70.1
unitig_8.g5043 Utricularia gibba HOM05D007769 ORTHO05D009588 1.1e-18 96.3 75 68.0
Duzib093G1544 Durio zibethinus HOM05D007769 ORTHO05D009588 1.4e-18 95.9 75 69.3
CiPaw.07G174700 Carya illinoinensis HOM05D007769 ORTHO05D009588 2.5e-18 95.1 75 66.7
Gohir.D05G213500 Gossypium hirsutum HOM05D007769 ORTHO05D009588 3.2e-18 94.7 76 69.7
Gorai.009G220200 Gossypium raimondii HOM05D007769 ORTHO05D009588 3.2e-18 94.7 76 69.7
TWI56G0221 Tripterygium wilfordii HOM05D007769 ORTHO05D009588 5.5e-18 94.0 75 70.7
Sabra02G0093000 Salix brachista HOM05D007769 ORTHO05D009588 7.2e-18 93.6 72 70.8
MELO3C010803.2 Cucumis melo HOM05D007769 ORTHO05D009588 9.3e-18 93.2 73 74.0
Sabra14G0009800 Salix brachista HOM05D007769 ORTHO05D009588 1.6e-17 92.4 72 69.4
Actinidia08247 Actinidia chinensis HOM05D007769 ORTHO05D009588 4.6e-17 90.9 75 68.0
SalBow7G0030 Salvia bowleyana HOM05D007769 ORTHO05D009588 6.1e-17 90.5 75 68.0
Sed0024574 Sechium edule HOM05D007769 ORTHO05D009588 7.9e-17 90.1 73 68.5
Actinidia38106 Actinidia chinensis HOM05D007769 ORTHO05D009588 3.0e-16 88.2 75 65.3
Eucgr.F02251 Eucalyptus grandis HOM05D007769 ORTHO05D009588 3.0e-16 88.2 75 66.7
CSS0007942 Camellia sinensis var. sinensis HOM05D007769 ORTHO05D009588 3.9e-16 87.8 75 65.3
Lj5g0000132 Lotus japonicus HOM05D007769 ORTHO05D009588 3.9e-16 87.8 73 67.1
PGR031G3105 Punica granatum HOM05D007769 ORTHO05D009588 8.7e-16 86.7 73 67.1
TPR.G37744 Trifolium pratense HOM05D007769 ORTHO05D009588 1.5e-15 85.9 73 67.1
Gohir.A01G123201 Gossypium hirsutum HOM05D007769 ORTHO05D009588 1.9e-15 85.5 89 57.3
HanXRQChr02g0039171 Helianthus annuus HOM05D007769 ORTHO05D009588 1.9e-15 85.5 76 61.8
Gohir.A05G210200 Gossypium hirsutum HOM05D007769 ORTHO05D009588 2.5e-15 85.1 74 66.2
Lsat_1_v5_gn_4_131941 Lactuca sativa HOM05D007769 ORTHO05D009588 2.5e-15 85.1 76 61.8
Medtr1g018020 Medicago truncatula HOM05D007769 ORTHO05D009588 2.5e-15 85.1 73 64.4
Ca_13216_v3 Cicer arietinum L. HOM05D007769 ORTHO05D009588 4.3e-15 84.3 73 64.4
ECA232G2369 Erigeron canadensis HOM05D007769 ORTHO05D009588 5.7e-15 84.0 76 60.5
Glyma.14G089015 Glycine max HOM05D007769 ORTHO05D009588 7.4e-15 83.6 75 65.3
Psat6g018200 Pisum sativum HOM05D007769 ORTHO05D009588 9.7e-15 83.2 73 63.0
CsaV3_2G026100 Cucumis sativus L. HOM05D007769 ORTHO05D009588 1.6e-14 82.4 70 72.9
ClCG08G016510 Citrullus lanatus HOM05D007769 ORTHO05D009588 3.7e-14 81.3 70 71.4
Glyma.17G234900 Glycine max HOM05D007769 ORTHO05D009588 4.8e-14 80.9 73 64.4
PSO017G3300 Papaver somniferum HOM05D007769 ORTHO05D009588 4.8e-14 80.9 73 61.6
PSO170G4501 Papaver somniferum HOM05D007769 ORTHO05D009588 4.8e-14 80.9 73 61.6
Sed0002164 Sechium edule HOM05D007769 ORTHO05D009588 2.4e-13 78.6 70 62.9
arahy.Tifrunner.gnm1.ann1.3X0B87 Arachis hypogaea HOM05D007769 ORTHO05D009588 9.1e-13 76.6 74 66.2
SGA_v2.0_scaffold238G43959 Striga asiatica HOM05D007769 ORTHO05D009588 9.1e-13 76.6 72 62.5
EL10Ac1g02381 Beta vulgaris HOM05D007769 ORTHO05D009588 1.2e-12 76.3 74 59.5
Migut.C00485 Erythranthe guttata HOM05D007769 ORTHO05D009588 3.4e-12 74.7 75 57.3
arahy.Tifrunner.gnm1.ann1.5K9QCS Arachis hypogaea HOM05D007769 ORTHO05D009588 5.9e-12 73.9 74 64.9
Aqoxy5G00863 Aquilegia oxysepala HOM05D007769 ORTHO05D009588 1.0e-11 73.2 74 56.8
Haze_22434 Corylus avellana HOM05D007769 ORTHO05D009588 2.2e-11 72.0 90 50.0
CDE04G0481 Ceratophyllum demersum HOM05D007769 ORTHO05D009588 2.9e-11 71.6 70 58.6
Gorai.002G135600 Gossypium raimondii HOM05D007769 ORTHO05D009588 3.8e-11 71.2 90 51.1
QL12p038109 Quercus lobata HOM05D007769 ORTHO05D009588 5.0e-11 70.9 102 50.0
Nn1g04547 Nelumbo nucifera HOM05D007769 ORTHO05D009588 8.5e-11 70.1 77 54.5
CANSAT78G2421 Cannabis sativa HOM05D007769 ORTHO05D009588 1.1e-10 69.7 73 56.2
Dinv39221 Davidia involucrata HOM05D007769 ORTHO05D009588 2.5e-10 68.6 75 60.0
FAN27G1659 Fragaria x ananassa HOM05D007769 ORTHO05D009588 7.2e-10 67.0 75 54.7
Rhsim07G0219800 Rhododendron simsii HOM05D007769 ORTHO05D009588 1.6e-09 65.9 90 48.9
CANSAT25G3084 Cannabis sativa HOM05D007769 ORTHO05D009588 2.7e-09 65.1 73 53.4
FAN20G1609 Fragaria x ananassa HOM05D007769 ORTHO05D009588 1.0e-08 63.2 89 46.1
Hma1.2p1_0819F.1_g223670 Hydrangea macrophylla HOM05D007769 ORTHO05D009588 1.8e-08 62.4 72 59.7
Lalb_Chr14g0368191 Lupinus albus HOM05D007769 ORTHO05D009588 3.0e-08 61.6 70 54.3
Phvul.001G027800 Phaseolus vulgaris HOM05D007769 ORTHO05D009588 3.0e-08 61.6 73 52.1
Nn5g30603 Nelumbo nucifera HOM05D007769 ORTHO05D009588 3.9e-08 61.2 78 51.3
FAN15G2183 Fragaria x ananassa HOM05D007769 ORTHO05D009588 1.5e-07 59.3 72 52.8
HPP92_006078 Vanilla planifolia HOM05D007769 ORTHO05D009588 9.7e-07 56.6 63 57.1


User provided reference genes

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