Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 8.3e-77 290.4 160 100.0
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.2e-70 270.0 148 100.0
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.2e-70 270.0 148 100.0
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 3.7e-69 265.0 148 98.0
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 5.4e-68 261.2 160 89.4
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 1.0e-66 256.9 163 87.7
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 3.9e-66 255.0 163 87.7
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 6.6e-66 254.2 161 89.4
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 7.3e-65 250.8 163 85.9
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.1e-64 249.2 149 92.6
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.8e-63 246.1 163 84.7
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 3.5e-59 231.9 162 79.6
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.5e-57 225.7 163 79.8
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.1e-52 208.4 165 73.3
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.9e-50 201.8 165 70.3
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 7.1e-44 181.0 151 66.9
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 7.1e-44 181.0 166 63.3
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.7e-42 176.4 169 62.7
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.7e-42 176.4 163 60.7
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.0e-42 175.6 169 61.5
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.9e-42 175.3 165 63.0
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 5.1e-42 174.9 167 63.5
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 2.5e-41 172.6 165 62.4
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 2.5e-41 172.6 171 62.0
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 3.3e-41 172.2 165 62.4
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 4.3e-41 171.8 164 64.0
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.6e-41 171.4 163 62.6
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.8e-40 169.1 166 63.9
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.7e-40 168.3 169 62.7
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 4.7e-40 168.3 169 63.3
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.4e-39 166.8 149 66.4
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.8e-39 166.4 159 61.0
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.8e-39 166.4 167 61.1
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.1e-39 165.6 163 62.0
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 6.9e-39 164.5 165 60.0
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.0e-39 164.1 168 58.9
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.2e-38 163.7 163 60.1
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.5e-38 163.3 149 65.1
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 5.8e-38 161.4 169 60.4
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.3e-37 160.2 153 62.7
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 3.8e-37 158.7 167 58.1
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 4.9e-37 158.3 165 59.4
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 4.9e-37 158.3 165 59.4
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 8.4e-37 157.5 164 56.7
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.4e-36 156.8 166 59.6
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.9e-36 156.4 167 57.5
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 4.2e-36 155.2 161 58.4
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 5.4e-36 154.8 144 61.1
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 5.4e-36 154.8 167 57.5
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 9.3e-36 154.1 160 60.0
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.2e-35 153.7 139 66.9
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 2.7e-35 152.5 169 56.8
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 3.5e-35 152.1 168 55.4
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 6.0e-35 151.4 146 61.6
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.0e-34 150.6 153 58.8
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.7e-34 149.8 163 57.7
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 1.7e-34 149.8 153 58.8
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.7e-34 149.8 162 58.0
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 2.3e-34 149.4 147 61.9
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 2.3e-34 149.4 150 60.7
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 2.3e-34 149.4 156 60.3
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.0e-34 149.1 175 56.6
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 3.0e-34 149.1 160 55.6
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 3.9e-34 148.7 150 60.0
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 3.3e-33 145.6 160 56.9
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 5.6e-33 144.8 152 58.6
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 5.6e-33 144.8 144 57.6
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 9.6e-33 144.1 153 58.2
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.3e-32 143.7 131 64.9
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.6e-32 143.3 127 64.6
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 2.8e-32 142.5 185 53.5
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 3.6e-32 142.1 156 55.8
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.6e-32 142.1 165 55.2
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 3.6e-32 142.1 184 51.1
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 4.8e-32 141.7 171 53.8
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 6.2e-32 141.4 165 55.2
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 8.1e-32 141.0 145 59.3
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.1e-31 140.6 190 49.5
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 2.4e-31 139.4 152 52.6
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 3.1e-31 139.0 163 54.6
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 3.1e-31 139.0 169 54.4
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 6.9e-31 137.9 142 57.0
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.5e-30 136.7 161 52.8
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 4.5e-30 135.2 160 52.5
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 5.8e-30 134.8 157 54.8
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 5.8e-30 134.8 146 55.5
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 7.6e-30 134.4 110 70.9
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 9.9e-30 134.0 129 64.3
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 9.9e-30 134.0 129 64.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.3e-29 133.7 141 54.6
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.2e-29 132.9 133 59.4
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 3.8e-29 132.1 110 70.0
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 6.4e-29 131.3 169 53.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 3.2e-28 129.0 151 52.3
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.2e-27 127.1 154 55.2
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.1e-27 126.3 151 53.0
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 3.5e-27 125.6 146 57.5
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 3.5e-27 125.6 153 52.9
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.6e-27 125.2 152 53.3
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.6e-27 125.2 165 51.5
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 4.6e-27 125.2 159 53.5
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 6.0e-27 124.8 152 53.9
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-26 123.6 154 50.6
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.8e-26 123.2 152 52.6
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.3e-26 122.9 163 50.3
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 3.0e-26 122.5 126 59.5
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.1e-26 121.7 152 53.3
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 2.5e-25 119.4 127 54.3
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.3e-25 118.6 166 48.2
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 9.6e-25 117.5 152 49.3
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 2.1e-24 116.3 168 46.4
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.8e-24 115.9 148 52.0
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.2e-24 114.8 152 50.7
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 6.2e-24 114.8 152 48.0
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 6.9e-23 111.3 120 57.5
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.2e-22 110.5 111 61.3
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.2e-21 106.3 159 45.3
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 2.9e-21 105.9 146 51.4
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 4.9e-21 105.1 114 60.5
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 6.4e-21 104.8 163 46.0
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 8.4e-21 104.4 108 58.3
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.1e-20 104.0 101 60.4
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.4e-20 103.6 126 51.6
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 7.1e-20 101.3 174 48.3
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-18 97.4 96 60.4
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.3e-18 96.3 171 43.3
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.5e-17 92.8 95 54.7
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 4.3e-17 92.0 111 51.4
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 2.1e-16 89.7 83 62.7
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 2.8e-16 89.4 89 65.2
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 2.4e-15 86.3 93 57.0
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 3.1e-15 85.9 153 43.8
A02p42760 Brassica napus HOM05D001512 ORTHO05D001574 5.3e-15 85.1 57 82.5
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.4e-14 82.4 96 51.0
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.1e-11 73.2 74 52.7
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.1e-11 73.2 81 55.6
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.1e-11 71.6 72 55.6
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.1e-11 71.6 72 55.6
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.1e-11 71.6 72 55.6
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.9e-10 68.9 54 64.8
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 5.1e-10 68.6 42 73.8
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 2.5e-09 66.2 45 75.6
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 3.7e-08 62.4 80 53.8
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.2e-08 61.2 64 57.8
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 5.3e-07 58.5 59 61.0
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 5.3e-07 58.5 85 48.2
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 9.0e-07 57.8 279 27.6
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.5e-06 57.0 61 52.5


User provided reference genes

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