Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 1.4e-106 391.0 494 100.0
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 5.3e-82 309.3 533 83.5
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 3.5e-81 306.6 533 83.3
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 3.5e-73 280.0 475 89.9
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 4.5e-65 253.1 155 98.7
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.8e-51 207.2 593 69.5
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 2.9e-48 197.2 594 68.0
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 2.8e-46 190.7 590 68.1
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 4.7e-46 189.9 598 67.2
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 6.8e-45 186.0 579 68.9
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.5e-44 184.9 597 67.0
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 2.6e-44 184.1 581 68.7
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 9.8e-44 182.2 558 70.8
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 6.4e-43 179.5 552 71.0
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 6.4e-43 179.5 583 68.1
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 6.4e-43 179.5 583 68.1
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 6.4e-43 179.5 558 70.6
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.2e-41 175.3 558 69.4
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.2e-41 175.3 558 69.4
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.5e-39 168.3 587 67.1
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 3.3e-39 167.2 590 66.6
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 1.8e-29 134.8 122 65.6
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 4.4e-28 130.2 577 62.4
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.1e-25 121.3 569 62.6
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.1e-22 111.3 562 65.3
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 6.4e-19 99.8 208 38.5
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.6e-14 85.1 549 63.0
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 3.6e-14 84.0 205 34.6
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 4.8e-14 83.6 208 34.1
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 8.1e-14 82.8 159 39.0
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 8.1e-14 82.8 185 35.7
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.1e-13 82.4 207 32.9
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.1e-13 82.4 160 40.0
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 1.4e-13 82.0 200 34.0
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 2.4e-13 81.3 208 33.2
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 4.0e-13 80.5 202 31.7
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 4.0e-13 80.5 199 33.2
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 5.3e-13 80.1 183 33.9
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 5.3e-13 80.1 158 39.9
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 5.3e-13 80.1 207 34.3
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 6.9e-13 79.7 210 33.8
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.2e-12 79.0 200 33.5
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 1.2e-12 79.0 200 32.5
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.5e-12 78.6 167 37.1
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 2.6e-12 77.8 206 32.5
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 2.6e-12 77.8 208 35.1
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.4e-12 77.4 206 31.6
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.4e-12 77.4 206 34.0
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.4e-12 77.4 206 31.6
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.4e-12 77.4 209 31.1
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 4.4e-12 77.0 163 36.8
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 4.4e-12 77.0 208 33.7
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 5.8e-12 76.6 158 39.2
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 7.6e-12 76.3 201 32.8
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 7.6e-12 76.3 206 34.0
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 9.9e-12 75.9 195 33.3
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.3e-11 75.5 175 33.7
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 2.2e-11 74.7 197 33.0
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.9e-11 74.3 207 33.8
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 2.9e-11 74.3 207 31.4
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 3.8e-11 73.9 196 32.7
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 3.8e-11 73.9 195 32.8
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 4.9e-11 73.6 158 38.6
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.1e-10 72.4 201 30.8
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 1.1e-10 72.4 205 34.1
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 3.2e-10 70.9 195 32.3
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 4.2e-10 70.5 206 31.6
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 4.2e-10 70.5 195 32.3
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 4.2e-10 70.5 197 31.5
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 4.2e-10 70.5 197 32.5
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.4e-10 70.1 188 33.0
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 7.1e-10 69.7 193 33.2
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 7.1e-10 69.7 195 32.3
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 9.3e-10 69.3 201 32.3
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 9.3e-10 69.3 141 39.0
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 1.6e-09 68.6 144 40.3
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 1.6e-09 68.6 144 40.3
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.6e-09 68.6 200 33.0
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 2.1e-09 68.2 204 30.4
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 2.7e-09 67.8 70 58.6
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 2.7e-09 67.8 53 64.2
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.5e-09 67.4 53 64.2
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 3.5e-09 67.4 195 31.3
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 4.6e-09 67.0 60 61.7
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 6.0e-09 66.6 209 31.1
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 6.0e-09 66.6 217 29.5
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 6.0e-09 66.6 80 48.8
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 7.8e-09 66.2 200 32.5
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 7.8e-09 66.2 200 28.5
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 7.8e-09 66.2 204 32.4
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 7.8e-09 66.2 198 30.8
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 7.8e-09 66.2 192 31.2
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.3e-08 65.5 171 38.0
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 1.3e-08 65.5 194 32.0
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.3e-08 65.5 61 55.7
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.3e-08 65.5 198 33.8
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.7e-08 65.1 196 33.2
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.7e-08 65.1 198 32.8
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 1.7e-08 65.1 198 32.8
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.3e-08 64.7 205 31.7
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.3e-08 64.7 62 58.1
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 3.0e-08 64.3 205 31.7
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.9e-08 63.9 452 67.7
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 3.9e-08 63.9 207 30.4
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 3.9e-08 63.9 205 31.2
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 6.6e-08 63.2 200 31.0
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 6.6e-08 63.2 202 30.7
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 6.6e-08 63.2 202 30.7
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 6.6e-08 63.2 200 32.0
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 8.7e-08 62.8 168 32.7
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.1e-07 62.4 201 31.3
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 1.1e-07 62.4 162 35.2
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.9e-07 61.6 60 55.0
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 2.5e-07 61.2 195 30.3
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 3.3e-07 60.8 138 33.3
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.3e-07 60.8 170 34.1
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.3e-07 60.8 170 34.1
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 4.3e-07 60.5 51 62.7
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 4.3e-07 60.5 185 31.9
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 4.3e-07 60.5 72 48.6
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 4.3e-07 60.5 52 63.5
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 5.6e-07 60.1 198 32.3
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 5.6e-07 60.1 201 30.8
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 5.6e-07 60.1 201 30.8
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 5.6e-07 60.1 201 31.3
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 7.3e-07 59.7 202 30.7
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 9.6e-07 59.3 202 29.7
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 9.6e-07 59.3 44 59.1
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 9.6e-07 59.3 190 32.6
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 1.3e-06 58.9 68 51.5
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.6e-06 58.5 123 38.2
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.6e-06 58.5 51 54.9
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.6e-06 58.5 52 61.5
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.1e-06 58.2 84 46.4
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 2.8e-06 57.8 180 35.0
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 2.8e-06 57.8 70 52.9
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 4.8e-06 57.0 220 26.8
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.8e-06 57.0 39 66.7
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 4.8e-06 57.0 85 45.9
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 6.2e-06 56.6 32 75.0
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 8.1e-06 56.2 52 53.8
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 8.1e-06 56.2 194 29.9
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 8.1e-06 56.2 54 55.6


User provided reference genes

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