Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 7.9e-169 597.0 306 100.0
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 3.1e-157 558.5 305 95.4
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 7.0e-157 557.4 305 95.1
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 1.0e-144 516.9 308 89.3
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.1e-130 470.3 307 82.4
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 2.1e-129 466.1 277 89.5
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.1e-117 427.2 345 71.6
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 2.4e-117 426.0 330 72.4
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 4.6e-116 421.8 336 72.0
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 6.0e-116 421.4 330 71.8
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.1e-113 412.9 328 71.0
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.1e-113 412.9 328 71.0
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.1e-113 412.9 328 71.0
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 6.8e-112 407.9 339 68.4
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 2.4e-93 346.3 331 62.5
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.5e-92 342.4 327 63.3
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.5e-90 337.0 328 61.9
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.3e-86 323.9 341 55.4
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.1e-82 310.8 325 58.2
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.1e-73 280.0 342 51.2
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 9.6e-66 254.6 359 47.9
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.5e-63 247.3 316 50.3
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.6e-60 235.7 315 49.8
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.4e-53 214.2 331 45.0
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.4e-53 214.2 356 43.5
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 4.2e-53 212.6 329 45.3
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.5e-53 212.2 339 44.8
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 4.8e-49 199.1 317 46.1
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 4.8e-49 199.1 317 46.1
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.4e-48 196.8 262 49.6
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.9e-45 187.2 317 45.4
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.9e-45 187.2 317 44.8
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 9.4e-37 158.3 366 34.2
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.8e-35 154.1 317 36.6
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 3.9e-35 152.9 368 34.2
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 4.4e-34 149.4 321 35.2
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.4e-34 149.4 366 32.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 7.4e-34 148.7 357 33.9
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 3.7e-33 146.4 355 34.4
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 3.7e-33 146.4 359 32.0
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.8e-33 146.0 358 33.0
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.4e-32 144.4 345 35.4
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.1e-32 143.3 361 32.7
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 4.1e-32 142.9 150 50.7
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.5e-31 139.4 354 32.2
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 7.7e-31 138.7 366 34.2
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 7.7e-31 138.7 357 33.6
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.3e-30 137.9 372 30.4
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.9e-30 136.7 118 56.8
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 5.0e-30 136.0 323 35.0
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.5e-30 135.6 328 32.9
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.5e-30 135.6 316 33.2
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 6.5e-30 135.6 341 34.0
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.1e-29 134.8 354 31.6
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.5e-29 134.4 369 32.0
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.5e-29 134.4 359 31.2
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.5e-29 134.4 359 31.2
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 3.2e-29 133.3 118 52.5
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 3.2e-29 133.3 116 55.2
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.2e-29 132.9 318 32.1
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.2e-29 132.9 318 32.1
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 4.2e-29 132.9 368 31.2
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 5.5e-29 132.5 354 33.6
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 7.2e-29 132.1 362 32.3
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.2e-28 131.3 358 31.8
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 3.6e-28 129.8 357 31.4
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 4.7e-28 129.4 113 57.5
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 4.7e-28 129.4 378 30.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 8.0e-28 128.6 320 31.6
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.0e-27 128.3 118 53.4
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.8e-27 127.5 362 31.2
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 5.2e-27 125.9 354 30.2
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 1.5e-26 124.4 368 30.7
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 1.5e-26 124.4 113 52.2
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.5e-26 124.4 358 32.1
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.7e-25 120.9 119 49.6
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 2.8e-25 120.2 112 50.0
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 2.8e-25 120.2 91 71.4
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 3.7e-25 119.8 302 31.5
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.1e-24 118.2 268 33.6
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.1e-24 118.2 359 29.2
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.1e-24 118.2 113 50.4
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.4e-24 117.9 356 28.9
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.4e-24 117.9 118 47.5
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.8e-24 117.5 133 46.6
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.8e-24 117.5 324 32.1
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.8e-24 117.5 112 50.9
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 9.1e-24 115.2 107 47.7
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 9.1e-24 115.2 307 30.9
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.0e-23 114.0 312 33.7
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.7e-23 113.6 313 31.0
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.5e-23 113.2 264 31.1
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 5.9e-23 112.5 119 46.2
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.3e-22 111.3 111 46.8
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.7e-22 110.9 321 29.6
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.7e-22 110.9 324 30.9
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 2.2e-22 110.5 310 31.6
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.8e-22 109.8 112 47.3
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 6.5e-22 109.0 340 29.7
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.5e-22 109.0 110 49.1
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 2.5e-21 107.1 225 34.7
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 7.2e-21 105.5 240 32.9
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.2e-20 104.8 112 46.4
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.2e-20 104.8 112 46.4
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 2.1e-20 104.0 119 42.0
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 3.6e-20 103.2 93 55.9
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 6.1e-20 102.4 118 44.9
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.1e-20 102.4 295 30.8
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 6.1e-20 102.4 112 42.9
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 8.0e-20 102.1 125 48.0
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.4e-19 101.3 211 30.8
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.8e-19 100.9 119 49.6
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 1.8e-19 100.9 241 28.2
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.8e-19 100.9 215 37.2
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.3e-19 100.5 300 29.3
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.0e-19 100.1 208 31.2
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 3.4e-18 96.7 114 43.9
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 5.7e-18 95.9 241 31.5
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 5.7e-18 95.9 91 48.4
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 1.3e-17 94.7 211 31.8
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 3.7e-17 93.2 92 50.0
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 4.9e-17 92.8 277 30.7
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 9.1e-16 88.6 199 30.2
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 9.1e-16 88.6 95 48.4
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.3e-14 84.7 308 28.6
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.3e-14 84.0 171 36.3
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 8.6e-14 82.0 219 32.0
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 1.5e-13 81.3 108 38.0
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 3.6e-12 76.6 200 27.5
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 6.1e-12 75.9 118 39.0
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.4e-11 74.7 106 39.6
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.5e-10 71.2 84 44.0
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.4e-10 70.1 99 38.4
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 2.9e-09 67.0 305 26.6
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 2.7e-07 60.5 72 51.4
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 2.7e-07 60.5 169 30.2
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 4.6e-07 59.7 180 28.9
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 5.9e-07 59.3 180 28.9
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 5.9e-07 59.3 87 40.2
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.3e-06 58.2 136 30.9
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.7e-06 57.8 104 33.7
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.3e-06 57.4 31 71.0
BcaNung06448 Brassica carinata HOM05D005306 ORTHO05D006158 2.9e-06 57.0 110 39.1


User provided reference genes

Program Settings