Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23268 Brassica carinata HOM05D000048 ORTHO05D010326 5.6e-33 143.7 72 100.0
BolC9t53949H Brassica oleracea HOM05D000048 ORTHO05D000436 1.3e-24 115.9 57 100.0
C09p10470 Brassica napus HOM05D000048 ORTHO05D000436 1.1e-23 112.8 57 98.2
A09p09010 Brassica napus HOM05D000048 ORTHO05D000436 1.1e-20 102.8 57 91.2
BraA09t36552Z Brassica rapa HOM05D000048 ORTHO05D000436 1.1e-20 102.8 57 91.2
BcaB04g20012 Brassica carinata HOM05D000048 ORTHO05D000436 1.6e-19 99.0 57 89.5
Thhalv10004087m.g Eutrema salsugineum HOM05D000048 ORTHO05D000436 1.4e-15 85.9 63 76.2
Sp2g28465 Schrenkiella parvula HOM05D000048 ORTHO05D000436 2.4e-15 85.1 60 73.3
Sp2g28460 Schrenkiella parvula HOM05D000048 ORTHO05D000436 1.5e-14 82.4 60 75.0
BcaC03g18332 Brassica carinata HOM05D000048 ORTHO05D000436 2.6e-14 81.6 60 75.0
C02p64070 Brassica napus HOM05D000048 ORTHO05D000436 2.6e-14 81.6 60 75.0
BolC2t12472H Brassica oleracea HOM05D000048 ORTHO05D000436 2.6e-14 81.6 60 75.0
CARHR279350 Cardamine hirsuta HOM05D000048 ORTHO05D000436 3.4e-14 81.3 56 73.2
C03p60720 Brassica napus HOM05D000048 ORTHO05D000436 4.5e-14 80.9 61 72.1
A06p32200 Brassica napus HOM05D000048 ORTHO05D000436 1.0e-13 79.7 60 75.0
Thhalv10004090m.g Eutrema salsugineum HOM05D000048 ORTHO05D000436 1.3e-13 79.3 60 73.3
AL8G42950 Arabidopsis lyrata HOM05D000048 ORTHO05D000436 1.7e-13 79.0 60 71.7
A06p32230 Brassica napus HOM05D000048 ORTHO05D000436 1.7e-13 79.0 58 70.7
BraA06t26149Z Brassica rapa HOM05D000048 ORTHO05D000436 1.7e-13 79.0 58 70.7
BraA06t26147Z Brassica rapa HOM05D000048 ORTHO05D000436 3.8e-13 77.8 60 73.3
Carub.0008s2623 Capsella rubella HOM05D000048 ORTHO05D000436 3.8e-13 77.8 60 70.0
BcaB02g09895 Brassica carinata HOM05D000048 ORTHO05D000436 6.5e-13 77.0 54 72.2
AT5G65380 Arabidopsis thaliana HOM05D000048 ORTHO05D000436 1.1e-12 76.3 55 69.1
BcaC01g02769 Brassica carinata HOM05D000048 ORTHO05D000436 1.1e-12 76.3 58 69.0
C03p60690 Brassica napus HOM05D000048 ORTHO05D000436 1.1e-12 76.3 58 69.0
BolC3t18328H Brassica oleracea HOM05D000048 ORTHO05D000436 1.1e-12 76.3 58 69.0
Aa31LG1G16630 Aethionema arabicum HOM05D000048 ORTHO05D000436 2.5e-12 75.1 68 58.8
BolC3t18329H Brassica oleracea HOM05D000048 ORTHO05D000436 4.2e-12 74.3 61 67.2
A06p32210 Brassica napus HOM05D000048 ORTHO05D000436 2.7e-11 71.6 61 65.6
C03p60700 Brassica napus HOM05D000048 ORTHO05D000436 2.7e-11 71.6 53 66.0
BraA06t26148Z Brassica rapa HOM05D000048 ORTHO05D000436 2.7e-11 71.6 61 65.6
Manes.12G129000 Manihot esculenta HOM05D000048 ORTHO05D000436 3.3e-09 64.7 62 61.3
THA.LOC104819295 Tarenaya hassleriana HOM05D000048 ORTHO05D000436 3.3e-09 64.7 57 54.4
Sopen04g029790 Solanum pennellii HOM05D000048 ORTHO05D000436 1.3e-08 62.8 48 58.3
Cpa.g.sc55.57 Carica papaya HOM05D000048 ORTHO05D000436 2.2e-08 62.0 74 47.3
Ca_04553_v3 Cicer arietinum L. HOM05D000048 ORTHO05D000436 2.2e-08 62.0 53 58.5
Manes.13G097900 Manihot esculenta HOM05D000048 ORTHO05D000436 3.7e-08 61.2 43 69.8
Duzib147G0783 Durio zibethinus HOM05D000048 ORTHO05D000436 1.4e-07 59.3 50 56.0
Eucgr.F00387 Eucalyptus grandis HOM05D000048 ORTHO05D000436 1.4e-07 59.3 58 56.9
Sabra07G0007700 Salix brachista HOM05D000048 ORTHO05D000436 1.4e-07 59.3 47 59.6
Migut.L00167 Erythranthe guttata HOM05D000048 ORTHO05D000436 1.8e-07 58.9 45 55.6
Lalb_Chr05g0216521 Lupinus albus HOM05D000048 ORTHO05D000436 1.8e-07 58.9 50 58.0
COL.COLO4_27314 Corchorus olitorius HOM05D000048 ORTHO05D000436 2.4e-07 58.5 37 67.6
Duzib264G0991 Durio zibethinus HOM05D000048 ORTHO05D000436 2.4e-07 58.5 37 70.3
Thecc.01G093700 Theobroma cacao HOM05D000048 ORTHO05D000436 2.4e-07 58.5 37 70.3
TPR.G38735 Trifolium pratense HOM05D000048 ORTHO05D000436 2.4e-07 58.5 52 55.8
MSTRG.3644 Avicennia marina HOM05D000048 ORTHO05D000436 3.1e-07 58.2 38 68.4
BcaC04g19303 Brassica carinata HOM05D000048 ORTHO05D000436 3.1e-07 58.2 45 53.3
Dinv20786 Davidia involucrata HOM05D000048 ORTHO05D000436 4.1e-07 57.8 32 75.0
ECA247G0552 Erigeron canadensis HOM05D000048 ORTHO05D010326 4.1e-07 57.8 46 56.5
Manes.18G062800 Manihot esculenta HOM05D000048 ORTHO05D000436 4.1e-07 57.8 58 51.7
Gohir.D11G218300 Gossypium hirsutum HOM05D000048 ORTHO05D000436 5.3e-07 57.4 37 64.9
Gorai.007G235800 Gossypium raimondii HOM05D000048 ORTHO05D000436 5.3e-07 57.4 37 64.9
BcaB05g21470 Brassica carinata HOM05D000048 ORTHO05D000436 6.9e-07 57.0 45 53.3
CiPaw.01G048300 Carya illinoinensis HOM05D000048 ORTHO05D000436 6.9e-07 57.0 42 57.1
Haze_18241 Corylus avellana HOM05D000048 ORTHO05D000436 6.9e-07 57.0 39 61.5
Hma1.2p1_0225F.1_g094980 Hydrangea macrophylla HOM05D000048 ORTHO05D000436 6.9e-07 57.0 31 77.4
Prupe.1G525200 Prunus persica HOM05D000048 ORTHO05D000436 6.9e-07 57.0 50 60.0
A02p00460 Brassica napus HOM05D000048 ORTHO05D000436 9.1e-07 56.6 45 51.1
BraA02t05029Z Brassica rapa HOM05D000048 ORTHO05D000436 9.1e-07 56.6 45 51.1
Dinv20796 Davidia involucrata HOM05D000048 ORTHO05D000436 9.1e-07 56.6 50 56.0
Gohir.A11G203900 Gossypium hirsutum HOM05D000048 ORTHO05D000436 9.1e-07 56.6 37 64.9
Nitab4.5_0000836g0030 Nicotiana tabacum HOM05D000048 ORTHO05D000436 9.1e-07 56.6 50 56.0
QL02p002092 Quercus lobata HOM05D000048 ORTHO05D000436 9.1e-07 56.6 54 53.7
A10p27170 Brassica napus HOM05D000048 ORTHO05D000436 1.2e-06 56.2 45 51.1
BraA10t44768Z Brassica rapa HOM05D000048 ORTHO05D000436 1.2e-06 56.2 45 51.1
Cfa017909 Carpinus fangiana HOM05D000048 ORTHO05D000436 1.2e-06 56.2 39 59.0
Eucgr.H04732 Eucalyptus grandis HOM05D000048 ORTHO05D000436 1.2e-06 56.2 37 67.6
FvH4_7g30730 Fragaria vesca HOM05D000048 ORTHO05D000436 1.2e-06 56.2 37 67.6
FAN06G0098 Fragaria x ananassa HOM05D000048 ORTHO05D000436 1.2e-06 56.2 37 67.6
FAN06G4848 Fragaria x ananassa HOM05D000048 ORTHO05D000436 1.2e-06 56.2 37 67.6
FAN26G0554 Fragaria x ananassa HOM05D000048 ORTHO05D000436 1.2e-06 56.2 37 67.6
Medtr5g032720 Medicago truncatula HOM05D000048 ORTHO05D000436 1.2e-06 56.2 49 53.1
Peaxi162Scf00139g00616 Petunia axillaris HOM05D000048 ORTHO05D010326 1.2e-06 56.2 51 52.9
Rhsim10G0169900 Rhododendron simsii HOM05D000048 ORTHO05D010326 1.2e-06 56.2 31 77.4
Carub.0006s0889 Capsella rubella HOM05D000048 ORTHO05D000436 1.5e-06 55.8 50 52.0
Ciclev10000950m.g Citrus clementina HOM05D000048 ORTHO05D000436 2.0e-06 55.5 41 56.1
Oeu055127.2 Olea europaea HOM05D000048 ORTHO05D000436 2.0e-06 55.5 53 49.1
BcaB05g21481 Brassica carinata HOM05D000048 ORTHO05D000436 2.6e-06 55.1 52 48.1
BcaC03g13309 Brassica carinata HOM05D000048 ORTHO05D000436 2.6e-06 55.1 52 48.1
C02p04400 Brassica napus HOM05D000048 ORTHO05D000436 2.6e-06 55.1 52 48.1
Cfa004365 Carpinus fangiana HOM05D000048 ORTHO05D000436 2.6e-06 55.1 31 74.2
Haze_15044 Corylus avellana HOM05D000048 ORTHO05D000436 2.6e-06 55.1 31 74.2
MELO3C018967.2 Cucumis melo HOM05D000048 ORTHO05D000436 2.6e-06 55.1 54 55.6
Migut.L00165 Erythranthe guttata HOM05D000048 ORTHO05D000436 2.6e-06 55.1 44 50.0
FvH4_1g20090 Fragaria vesca HOM05D000048 ORTHO05D000436 2.6e-06 55.1 37 64.9
FAN28G1820 Fragaria x ananassa HOM05D000048 ORTHO05D000436 2.6e-06 55.1 37 67.6
QL02p002115 Quercus lobata HOM05D000048 ORTHO05D000436 2.6e-06 55.1 56 51.8
Solyc04g074850.3 Solanum lycopersicum HOM05D000048 ORTHO05D000436 2.6e-06 55.1 48 56.2
MSTRG.15705 Avicennia marina HOM05D000048 ORTHO05D000436 3.4e-06 54.7 48 56.2
BcaB08g37107 Brassica carinata HOM05D000048 ORTHO05D000436 3.4e-06 54.7 45 51.1
BcaC04g19305 Brassica carinata HOM05D000048 ORTHO05D000436 3.4e-06 54.7 45 48.9
C09p66970 Brassica napus HOM05D000048 ORTHO05D000436 3.4e-06 54.7 45 48.9
BolC9t59472H Brassica oleracea HOM05D000048 ORTHO05D000436 3.4e-06 54.7 45 48.9
Dinv44819 Davidia involucrata HOM05D000048 ORTHO05D000436 3.4e-06 54.7 43 55.8
Gohir.D10G100700 Gossypium hirsutum HOM05D000048 ORTHO05D000436 3.4e-06 54.7 61 50.8
Gorai.011G110400 Gossypium raimondii HOM05D000048 ORTHO05D000436 3.4e-06 54.7 61 50.8
Hma1.2p1_1520F.1_g288580 Hydrangea macrophylla HOM05D000048 ORTHO05D000436 3.4e-06 54.7 35 68.6
MD01G1032800 Malus domestica HOM05D000048 ORTHO05D000436 3.4e-06 54.7 45 55.6
PGSC0003DMG400002123 Solanum tuberosum HOM05D000048 ORTHO05D000436 3.4e-06 54.7 41 56.1
PGSC0003DMG400002124 Solanum tuberosum HOM05D000048 ORTHO05D000436 3.4e-06 54.7 39 61.5
THA.LOC104798776 Tarenaya hassleriana HOM05D000048 ORTHO05D000436 3.4e-06 54.7 50 56.0
vmacro22072 Vaccinium macrocarpon HOM05D000048 ORTHO05D000436 3.4e-06 54.7 49 53.1
Actinidia10354 Actinidia chinensis HOM05D000048 ORTHO05D000436 4.5e-06 54.3 50 50.0
Ciclev10025480m.g Citrus clementina HOM05D000048 ORTHO05D000436 4.5e-06 54.3 47 51.1
CsaV3_4G009120 Cucumis sativus L. HOM05D000048 ORTHO05D000436 4.5e-06 54.3 37 62.2
MD15G1378200 Malus domestica HOM05D000048 ORTHO05D000436 4.5e-06 54.3 48 58.3
PGR042G0205 Punica granatum HOM05D000048 ORTHO05D000436 4.5e-06 54.3 44 61.4
Sopen00g009430 Solanum pennellii HOM05D000048 ORTHO05D000436 4.5e-06 54.3 47 53.2
SGA_v2.0_scaffold45G17265 Striga asiatica HOM05D000048 ORTHO05D000436 4.5e-06 54.3 33 66.7
AT5G44050 Arabidopsis thaliana HOM05D000048 ORTHO05D000436 5.9e-06 53.9 45 51.1
Dinv20799 Davidia involucrata HOM05D000048 ORTHO05D000436 5.9e-06 53.9 35 62.9
Lj4C729T11 Lonicera japonica HOM05D000048 ORTHO05D000436 5.9e-06 53.9 29 75.9
Medtr7g087370 Medicago truncatula HOM05D000048 ORTHO05D000436 5.9e-06 53.9 53 43.4
Nitab4.5_0001078g0110 Nicotiana tabacum HOM05D000048 ORTHO05D000436 5.9e-06 53.9 47 51.1
Rhsim10G0170100 Rhododendron simsii HOM05D000048 ORTHO05D010326 5.9e-06 53.9 37 62.2
Rhsim10G0170400 Rhododendron simsii HOM05D000048 ORTHO05D010326 5.9e-06 53.9 37 62.2
SalBow5G1406 Salvia bowleyana HOM05D000048 ORTHO05D000436 5.9e-06 53.9 60 50.0
Cc10_g06550 Coffea canephora HOM05D000048 ORTHO05D000436 7.7e-06 53.5 37 64.9
FvH4_5g36191 Fragaria vesca HOM05D000048 ORTHO05D000436 7.7e-06 53.5 53 52.8
FAN18G0919 Fragaria x ananassa HOM05D000048 ORTHO05D000436 7.7e-06 53.5 53 52.8
Psat3g084920 Pisum sativum HOM05D000048 ORTHO05D000436 7.7e-06 53.5 50 44.0
Psat3g085120 Pisum sativum HOM05D000048 ORTHO05D000436 7.7e-06 53.5 50 44.0
QL02p004620 Quercus lobata HOM05D000048 ORTHO05D000436 7.7e-06 53.5 56 50.0
Solyc04g074840.3 Solanum lycopersicum HOM05D000048 ORTHO05D000436 7.7e-06 53.5 35 68.6


User provided reference genes

Program Settings