Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 3.3e-99 365.2 198 100.0
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 3.3e-99 365.2 198 100.0
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 6.8e-97 357.5 198 98.0
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 1.2e-96 356.7 198 97.5
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 4.9e-95 351.3 197 95.4
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 7.1e-94 347.4 193 96.9
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 8.9e-89 330.5 195 89.7
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 8.9e-89 330.5 196 89.3
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 1.2e-88 330.1 197 88.8
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 2.0e-88 329.3 197 88.8
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 7.6e-88 327.4 197 88.8
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 6.4e-87 324.3 195 88.2
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 9.6e-67 257.3 209 69.4
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.3e-47 193.7 202 54.5
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 1.7e-47 193.4 198 54.5
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.1e-46 190.7 198 53.0
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 1.4e-46 190.3 195 53.8
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 1.9e-46 189.9 194 53.6
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 9.4e-46 187.6 197 52.3
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 6.1e-45 184.9 196 53.1
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 6.1e-45 184.9 199 52.8
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 1.0e-44 184.1 196 52.6
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.8e-44 183.3 198 51.5
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.8e-44 183.3 195 52.8
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 3.0e-44 182.6 196 52.0
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 2.5e-43 179.5 195 50.8
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.7e-42 176.8 195 50.8
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 6.3e-42 174.9 194 52.1
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.4e-41 172.9 196 52.6
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.1e-41 172.6 196 51.0
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.2e-40 170.6 197 53.3
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.5e-40 170.2 196 49.0
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 5.9e-40 168.3 197 52.3
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.7e-39 166.8 196 47.4
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 5.0e-39 165.2 196 46.9
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.0e-39 165.2 197 51.8
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 8.5e-39 164.5 196 50.0
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.5e-38 162.9 196 50.0
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 3.2e-38 162.5 195 47.2
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 4.2e-38 162.2 199 48.7
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 7.2e-38 161.4 195 49.2
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 7.2e-38 161.4 196 48.5
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 6.1e-37 158.3 196 48.5
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 6.1e-37 158.3 195 47.7
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 1.0e-36 157.5 196 47.4
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 1.8e-36 156.8 196 44.4
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 2.3e-36 156.4 196 46.9
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 5.1e-36 155.2 196 48.0
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 5.1e-36 155.2 195 45.1
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 6.7e-36 154.8 196 47.4
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 8.8e-36 154.5 196 49.0
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 1.1e-35 154.1 191 47.1
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.5e-35 153.7 196 45.9
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 2.0e-35 153.3 195 47.2
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 2.6e-35 152.9 197 48.7
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 3.3e-35 152.5 196 44.9
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 4.4e-35 152.1 190 46.8
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 7.4e-35 151.4 196 45.9
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.2e-34 149.8 197 47.2
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 2.8e-34 149.4 195 46.2
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.8e-34 149.4 202 48.5
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 3.7e-34 149.1 197 46.2
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 6.3e-34 148.3 196 45.4
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.4e-33 146.4 196 44.4
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 2.4e-33 146.4 195 44.6
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.1e-33 146.0 193 47.2
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.1e-33 145.6 197 47.7
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 4.1e-33 145.6 193 47.2
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 5.3e-33 145.2 198 47.5
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 5.3e-33 145.2 197 45.7
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 9.1e-33 144.4 197 46.7
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 9.1e-33 144.4 190 45.8
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 9.1e-33 144.4 193 46.1
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 1.6e-32 143.7 198 47.5
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 1.6e-32 143.7 195 44.6
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.6e-32 143.7 197 46.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 2.6e-32 142.9 195 44.1
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 3.5e-32 142.5 195 44.6
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 5.9e-32 141.7 196 44.4
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 5.9e-32 141.7 197 44.7
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 1.0e-31 141.0 197 42.6
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.3e-31 140.6 197 46.2
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.7e-31 140.2 193 45.6
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 5.0e-31 138.7 197 45.7
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 6.5e-31 138.3 192 43.8
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 8.5e-31 137.9 187 42.2
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.1e-30 137.5 191 45.5
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.1e-30 137.5 193 45.1
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 1.5e-30 137.1 198 42.9
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 1.9e-30 136.7 198 44.9
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 4.2e-30 135.6 193 43.0
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 9.4e-30 134.4 197 46.7
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.2e-29 134.0 198 43.4
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 4.7e-29 132.1 196 41.8
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 6.1e-29 131.7 197 44.2
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 8.0e-29 131.3 203 42.4
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.8e-28 130.2 192 42.7
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.3e-28 129.8 201 42.8
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 4.0e-28 129.0 196 44.4
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 8.8e-28 127.9 198 39.4
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 8.8e-28 127.9 195 46.7
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.1e-27 127.5 194 41.2
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 2.6e-27 126.3 198 40.4
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 3.3e-27 125.9 198 41.9
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 4.4e-27 125.6 197 44.2
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 5.7e-27 125.2 161 47.8
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.7e-26 123.6 192 40.1
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 1.7e-26 123.6 198 40.4
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 2.8e-26 122.9 200 39.5
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 6.3e-26 121.7 198 38.4
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 6.3e-26 121.7 192 39.6
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.4e-25 120.6 205 38.5
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.4e-25 120.6 196 40.3
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.4e-25 120.6 198 42.9
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 3.1e-25 119.4 189 40.7
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 3.1e-25 119.4 187 41.7
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 4.1e-25 119.0 199 40.7
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 7.0e-25 118.2 184 43.5
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 9.1e-25 117.9 198 42.9
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 1.2e-24 117.5 187 41.7
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 1.2e-24 117.5 198 40.4
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 3.5e-24 115.9 198 39.9
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 5.9e-24 115.2 152 46.7
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 1.0e-23 114.4 198 36.9
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 2.9e-23 112.8 191 37.2
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 5.0e-23 112.1 197 40.6
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 5.0e-23 112.1 198 37.4
BolC6t39019H Brassica oleracea HOM05D004648 ORTHO05D031748 1.5e-22 110.5 66 95.5
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.5e-22 110.5 198 36.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.5e-22 110.5 165 41.8
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 1.5e-22 110.5 196 38.8
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 2.5e-22 109.8 138 46.4
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.5e-22 109.8 192 39.1
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 3.2e-22 109.4 199 38.7
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.2e-21 107.5 128 52.3
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 2.7e-21 106.3 202 38.1
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 6.1e-21 105.1 118 50.8
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 8.0e-21 104.8 191 37.2
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.0e-20 104.4 161 41.6
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 1.4e-20 104.0 198 35.4
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 2.3e-20 103.2 205 36.6
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 4.0e-20 102.4 198 35.9
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 2.6e-19 99.8 183 35.5
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 4.8e-18 95.5 189 37.6
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 1.4e-17 94.0 181 35.4
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 2.7e-16 89.7 158 38.6
C05p30630 Brassica napus HOM05D004648 ORTHO05D031748 8.5e-15 84.7 50 96.0
C06p39250 Brassica napus HOM05D004648 ORTHO05D005782 1.5e-14 84.0 50 96.0
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 4.2e-14 82.4 102 45.1
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.2e-13 80.9 200 31.0
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.7e-13 79.7 135 37.8
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.7e-13 79.0 201 31.3
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.0e-12 77.8 135 37.0
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 3.0e-12 76.3 117 38.5


User provided reference genes

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