Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23215 Brassica carinata HOM05D000663 ORTHO05D024432 4.8e-32 140.6 72 100.0
BolC9t53995H Brassica oleracea HOM05D000663 ORTHO05D024432 4.8e-32 140.6 72 100.0
C09p11030 Brassica napus HOM05D000663 ORTHO05D024432 2.0e-30 135.2 72 97.2
C09p10980 Brassica napus HOM05D000663 ORTHO05D024432 2.2e-29 131.7 72 93.1
Sp4g11170 Schrenkiella parvula HOM05D000663 ORTHO05D000834 1.8e-15 85.5 72 66.7
Carub.0004s0929 Capsella rubella HOM05D000663 ORTHO05D000834 1.2e-14 82.8 72 65.3
AT2G28370 Arabidopsis thaliana HOM05D000663 ORTHO05D000834 2.6e-14 81.6 72 63.9
AL4G21660 Arabidopsis lyrata HOM05D000663 ORTHO05D000834 4.5e-14 80.9 72 63.9
Thhalv10017309m.g Eutrema salsugineum HOM05D000663 ORTHO05D000834 1.3e-13 79.3 72 62.5
Aa31LG5G7850 Aethionema arabicum HOM05D000663 ORTHO05D000834 2.2e-13 78.6 72 62.5
THA.LOC104815746 Tarenaya hassleriana HOM05D000663 ORTHO05D000834 2.9e-13 78.2 72 61.1
A07p18940 Brassica napus HOM05D000663 ORTHO05D000834 8.5e-13 76.6 72 61.1
BraA07t29599Z Brassica rapa HOM05D000663 ORTHO05D000834 8.5e-13 76.6 72 61.1
BcaB06g28209 Brassica carinata HOM05D000663 ORTHO05D000834 1.4e-12 75.9 73 61.6
CARHR121320 Cardamine hirsuta HOM05D000663 ORTHO05D000834 1.9e-12 75.5 72 61.1
THA.LOC104826367 Tarenaya hassleriana HOM05D000663 ORTHO05D000834 4.2e-12 74.3 72 59.7
BolC4t27273H Brassica oleracea HOM05D000663 ORTHO05D000834 5.5e-12 73.9 72 56.9
A04p21490 Brassica napus HOM05D000663 ORTHO05D000834 1.2e-11 72.8 72 55.6
BraA04t17715Z Brassica rapa HOM05D000663 ORTHO05D000834 1.2e-11 72.8 72 55.6
BcaC02g08182 Brassica carinata HOM05D000663 ORTHO05D000834 1.6e-11 72.4 72 55.6
C04p57520 Brassica napus HOM05D000663 ORTHO05D000834 1.6e-11 72.4 72 55.6
C04p23110 Brassica napus HOM05D000663 ORTHO05D000834 1.0e-10 69.7 73 58.9
Eucgr.J00926 Eucalyptus grandis HOM05D000663 ORTHO05D000834 1.0e-10 69.7 72 58.3
Actinidia03724 Actinidia chinensis HOM05D000663 ORTHO05D000834 2.0e-09 65.5 72 55.6
Manes.04G020000 Manihot esculenta HOM05D000663 ORTHO05D000834 5.7e-09 63.9 72 52.8
PGR119G1301 Punica granatum HOM05D000663 ORTHO05D000834 7.4e-09 63.5 72 54.2
Cpa.g.sc545.2 Carica papaya HOM05D000663 ORTHO05D000834 9.7e-09 63.2 72 54.2
MELO3C004889.2 Cucumis melo HOM05D000663 ORTHO05D000834 1.3e-08 62.8 72 55.6
Ciclev10029379m.g Citrus clementina HOM05D000663 ORTHO05D000834 1.7e-08 62.4 72 54.2
GSVIVG01025194001 Vitis vinifera HOM05D000663 ORTHO05D000834 1.7e-08 62.4 72 54.2
Nitab4.5_0003131g0020 Nicotiana tabacum HOM05D000663 ORTHO05D000834 2.8e-08 61.6 72 54.2
Nitab4.5_0004624g0060 Nicotiana tabacum HOM05D000663 ORTHO05D000834 2.8e-08 61.6 72 54.2
BolC4t23805H Brassica oleracea HOM05D000663 ORTHO05D024432 4.8e-08 60.8 62 59.7
Dinv32737 Davidia involucrata HOM05D000663 ORTHO05D000834 6.3e-08 60.5 72 52.8
Lj2A1026T30 Lonicera japonica HOM05D000663 ORTHO05D000834 1.1e-07 59.7 72 52.8
SHI23750 Sapria himalayana HOM05D000663 ORTHO05D000834 2.4e-07 58.5 72 51.4
ClCG01G013670 Citrullus lanatus HOM05D000663 ORTHO05D000834 3.1e-07 58.2 72 52.8
Sed0024133 Sechium edule HOM05D000663 ORTHO05D000834 3.1e-07 58.2 72 51.4
vmacro14433 Vaccinium macrocarpon HOM05D000663 ORTHO05D000834 3.1e-07 58.2 70 50.0
ClCG04G009120 Citrullus lanatus HOM05D000663 ORTHO05D000834 4.1e-07 57.8 72 52.8
Peaxi162Scf00270g00417 Petunia axillaris HOM05D000663 ORTHO05D000834 4.1e-07 57.8 72 50.0
Solyc11g069480.2 Solanum lycopersicum HOM05D000663 ORTHO05D000834 6.9e-07 57.0 72 52.8
Manes.11G146200 Manihot esculenta HOM05D000663 ORTHO05D000834 1.2e-06 56.2 72 50.0
QL08p055774 Quercus lobata HOM05D000663 ORTHO05D000834 1.2e-06 56.2 70 48.6
TAR623G0532 Trochodendron aralioides HOM05D000663 ORTHO05D000834 1.2e-06 56.2 72 52.8
MELO3C014231.2 Cucumis melo HOM05D000663 ORTHO05D000834 1.5e-06 55.8 72 51.4
CsaV3_6G039640 Cucumis sativus L. HOM05D000663 ORTHO05D000834 1.5e-06 55.8 72 51.4
Sed0013865 Sechium edule HOM05D000663 ORTHO05D000834 1.5e-06 55.8 66 48.5
PGSC0003DMG400008080 Solanum tuberosum HOM05D000663 ORTHO05D000834 1.5e-06 55.8 72 51.4
CANSAT54G2104 Cannabis sativa HOM05D000663 ORTHO05D000834 2.0e-06 55.5 72 50.0
FAN16G2729 Fragaria x ananassa HOM05D000663 ORTHO05D000834 2.0e-06 55.5 72 51.4
Hma1.2p1_0058F.1_g032450 Hydrangea macrophylla HOM05D000663 ORTHO05D000834 2.0e-06 55.5 72 50.0
TAR369G1067 Trochodendron aralioides HOM05D000663 ORTHO05D000834 2.0e-06 55.5 72 51.4
CSS0043917 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D000834 4.5e-06 54.3 72 47.2
Duzib150G0755 Durio zibethinus HOM05D000663 ORTHO05D000834 4.5e-06 54.3 73 49.3
Lj3g0026216 Lotus japonicus HOM05D000663 ORTHO05D000834 4.5e-06 54.3 74 52.7
Potri.009G014600 Populus trichocarpa HOM05D000663 ORTHO05D000834 4.5e-06 54.3 72 48.6
FAN21G0881 Fragaria x ananassa HOM05D000663 ORTHO05D000834 7.7e-06 53.5 72 50.0
FAN25G2852 Fragaria x ananassa HOM05D000663 ORTHO05D000834 7.7e-06 53.5 72 50.0


User provided reference genes

Program Settings