Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23202 Brassica carinata HOM05D003043 ORTHO05D031725 2.2e-131 472.2 227 100.0
BolC9t54008H Brassica oleracea HOM05D003043 ORTHO05D031725 2.8e-78 295.8 217 72.4
A01p26080 Brassica napus HOM05D003043 ORTHO05D003652 1.0e-56 224.2 383 43.1
C09p11190 Brassica napus HOM05D003043 ORTHO05D031725 1.0e-56 224.2 191 65.4
BraA01t02526Z Brassica rapa HOM05D003043 ORTHO05D003652 1.0e-56 224.2 383 43.1
BcaC09g49767 Brassica carinata HOM05D003043 ORTHO05D003652 1.4e-56 223.8 383 43.1
C01p33160 Brassica napus HOM05D003043 ORTHO05D003652 1.4e-56 223.8 383 43.1
AT3G46740 Arabidopsis thaliana HOM05D003043 ORTHO05D003652 1.3e-54 217.2 383 42.3
AL5G25720 Arabidopsis lyrata HOM05D003043 ORTHO05D003652 3.7e-54 215.7 384 42.4
BcaC01g01890 Brassica carinata HOM05D003043 ORTHO05D003652 6.3e-54 214.9 384 42.4
A06p20820 Brassica napus HOM05D003043 ORTHO05D003652 6.3e-54 214.9 384 42.4
C03p70910 Brassica napus HOM05D003043 ORTHO05D003652 6.3e-54 214.9 384 42.4
BolC3t19366H Brassica oleracea HOM05D003043 ORTHO05D003652 6.3e-54 214.9 384 42.4
BraA06t25157Z Brassica rapa HOM05D003043 ORTHO05D003652 6.3e-54 214.9 384 42.4
Sp5g14980 Schrenkiella parvula HOM05D003043 ORTHO05D003652 8.2e-54 214.5 384 42.4
Thhalv10002403m.g Eutrema salsugineum HOM05D003043 ORTHO05D003652 1.8e-53 213.4 384 42.4
CARHR154930 Cardamine hirsuta HOM05D003043 ORTHO05D003652 5.3e-53 211.8 384 41.9
THA.LOC104799432 Tarenaya hassleriana HOM05D003043 ORTHO05D003652 2.0e-52 209.9 384 41.1
Aa31LG4G15670 Aethionema arabicum HOM05D003043 ORTHO05D003652 1.0e-51 207.6 384 41.4
BcaB01g00984 Brassica carinata HOM05D003043 ORTHO05D003652 4.2e-50 202.2 358 42.2
BcaB02g10711 Brassica carinata HOM05D003043 ORTHO05D003652 7.2e-50 201.4 391 41.4
THA.LOC104810757 Tarenaya hassleriana HOM05D003043 ORTHO05D003652 9.4e-50 201.1 384 40.6
PGR102G2695 Punica granatum HOM05D003043 ORTHO05D003652 8.8e-48 194.5 384 39.3
Cpa.g.sc81.103 Carica papaya HOM05D003043 ORTHO05D003652 1.5e-47 193.7 384 39.6
Atru.chr3.3955 Acer truncatum HOM05D003043 ORTHO05D003652 5.7e-47 191.8 384 39.6
Lalb_Chr14g0372011 Lupinus albus HOM05D003043 ORTHO05D003652 1.3e-46 190.7 384 38.5
Manes.01G169900 Manihot esculenta HOM05D003043 ORTHO05D003652 2.8e-46 189.5 384 38.3
Sabra03G0114700 Salix brachista HOM05D003043 ORTHO05D003652 2.8e-46 189.5 384 39.3
CiPaw.14G065900 Carya illinoinensis HOM05D003043 ORTHO05D003652 3.7e-46 189.1 384 39.1
Duzib170G0098 Durio zibethinus HOM05D003043 ORTHO05D003652 3.7e-46 189.1 385 38.2
Gohir.A07G100300 Gossypium hirsutum HOM05D003043 ORTHO05D003652 3.7e-46 189.1 385 37.9
Potri.003G158100 Populus trichocarpa HOM05D003043 ORTHO05D003652 3.7e-46 189.1 381 39.1
Ciclev10027835m.g Citrus clementina HOM05D003043 ORTHO05D003652 6.3e-46 188.3 390 39.0
Lalb_Chr22g0352461 Lupinus albus HOM05D003043 ORTHO05D003652 6.3e-46 188.3 385 37.9
Potri.001G072800 Populus trichocarpa HOM05D003043 ORTHO05D003652 6.3e-46 188.3 380 39.2
Thecc.09G316500 Theobroma cacao HOM05D003043 ORTHO05D003652 6.3e-46 188.3 385 37.9
ClCG03G001310 Citrullus lanatus HOM05D003043 ORTHO05D003652 8.2e-46 188.0 380 38.4
FAN08G1552 Fragaria x ananassa HOM05D003043 ORTHO05D003652 8.2e-46 188.0 380 39.2
Sabra01G0051400 Salix brachista HOM05D003043 ORTHO05D003652 8.2e-46 188.0 380 38.9
Carub.0005s1300 Capsella rubella HOM05D003043 ORTHO05D003652 1.1e-45 187.6 317 43.8
MD03G1086500 Malus domestica HOM05D003043 ORTHO05D003652 1.1e-45 187.6 382 38.7
TWI75G1391 Tripterygium wilfordii HOM05D003043 ORTHO05D003652 1.1e-45 187.6 383 38.1
VMungo1080G0243 Vigna mungo HOM05D003043 ORTHO05D003652 1.1e-45 187.6 379 38.3
FAN13G2534 Fragaria x ananassa HOM05D003043 ORTHO05D003652 1.4e-45 187.2 380 39.2
AL8G35700 Arabidopsis lyrata HOM05D003043 ORTHO05D003652 1.8e-45 186.8 379 37.5
Dinv34276 Davidia involucrata HOM05D003043 ORTHO05D003652 1.8e-45 186.8 377 39.3
FvH4_5g29410 Fragaria vesca HOM05D003043 ORTHO05D003652 1.8e-45 186.8 380 39.2
FAN18G0944 Fragaria x ananassa HOM05D003043 ORTHO05D003652 1.8e-45 186.8 380 39.2
Gohir.D05G093900 Gossypium hirsutum HOM05D003043 ORTHO05D003652 1.8e-45 186.8 385 37.9
Gorai.009G096900 Gossypium raimondii HOM05D003043 ORTHO05D003652 1.8e-45 186.8 385 37.9
TWI79G0647 Tripterygium wilfordii HOM05D003043 ORTHO05D003652 1.8e-45 186.8 383 38.1
Gohir.A13G226800 Gossypium hirsutum HOM05D003043 ORTHO05D003652 2.4e-45 186.4 385 37.9
Gohir.D13G232100 Gossypium hirsutum HOM05D003043 ORTHO05D003652 2.4e-45 186.4 385 37.9
Gorai.001G112300 Gossypium raimondii HOM05D003043 ORTHO05D003652 2.4e-45 186.4 385 37.7
Gorai.013G262900 Gossypium raimondii HOM05D003043 ORTHO05D003652 2.4e-45 186.4 385 37.9
Phvul.L007943 Phaseolus vulgaris HOM05D003043 ORTHO05D003652 3.1e-45 186.0 379 38.0
arahy.Tifrunner.gnm1.ann1.0C0BSE Arachis hypogaea HOM05D003043 ORTHO05D003652 4.1e-45 185.7 383 37.3
arahy.Tifrunner.gnm1.ann1.PZH5ZT Arachis hypogaea HOM05D003043 ORTHO05D003652 4.1e-45 185.7 383 37.3
Gohir.A05G093400 Gossypium hirsutum HOM05D003043 ORTHO05D003652 4.1e-45 185.7 385 37.7
Gohir.D07G104400 Gossypium hirsutum HOM05D003043 ORTHO05D003652 7.0e-45 184.9 385 37.4
Sed0022880 Sechium edule HOM05D003043 ORTHO05D003652 7.0e-45 184.9 380 37.6
MELO3C020610.2 Cucumis melo HOM05D003043 ORTHO05D003652 9.1e-45 184.5 380 37.4
TAR636G1806 Trochodendron aralioides HOM05D003043 ORTHO05D003652 9.1e-45 184.5 356 39.6
Cc01_g13290 Coffea canephora HOM05D003043 ORTHO05D003652 2.0e-44 183.3 386 37.6
Glyma.13G338700 Glycine max HOM05D003043 ORTHO05D003652 2.0e-44 183.3 379 38.3
HanXRQChr04g0109241 Helianthus annuus HOM05D003043 ORTHO05D003652 2.0e-44 183.3 383 38.9
RcHm_v2.0_Chr7g0222311 Rosa chinensis HOM05D003043 ORTHO05D003652 2.0e-44 183.3 380 38.9
Glyma.15G035600 Glycine max HOM05D003043 ORTHO05D003652 2.6e-44 183.0 379 37.5
HanXRQChr01g0010431 Helianthus annuus HOM05D003043 ORTHO05D003652 2.6e-44 183.0 383 38.6
Solyc06g076360.4 Solanum lycopersicum HOM05D003043 ORTHO05D003652 2.6e-44 183.0 380 37.9
PGSC0003DMG400030420 Solanum tuberosum HOM05D003043 ORTHO05D003652 2.6e-44 183.0 380 37.9
unitig_747.g22046 Utricularia gibba HOM05D003043 ORTHO05D003652 2.6e-44 183.0 384 38.0
MSTRG.21224 Avicennia marina HOM05D003043 ORTHO05D003652 3.5e-44 182.6 383 37.3
CSS0026296 Camellia sinensis var. sinensis HOM05D003043 ORTHO05D003652 3.5e-44 182.6 377 38.5
Lj3g0007907 Lotus japonicus HOM05D003043 ORTHO05D003652 3.5e-44 182.6 384 37.2
CsaV3_1G034510 Cucumis sativus L. HOM05D003043 ORTHO05D003652 5.9e-44 181.8 380 37.4
Sopen06g032770 Solanum pennellii HOM05D003043 ORTHO05D003652 5.9e-44 181.8 380 37.6
ECA248G3037 Erigeron canadensis HOM05D003043 ORTHO05D003652 1.3e-43 180.6 379 37.7
Oeu045617.1 Olea europaea HOM05D003043 ORTHO05D003652 1.3e-43 180.6 384 37.5
SalBow1G3349 Salvia bowleyana HOM05D003043 ORTHO05D003652 1.3e-43 180.6 384 38.5
SalBow6G3018 Salvia bowleyana HOM05D003043 ORTHO05D003652 1.3e-43 180.6 384 38.5
TAR623G1400 Trochodendron aralioides HOM05D003043 ORTHO05D003652 1.3e-43 180.6 385 38.4
MD11G1095600 Malus domestica HOM05D003043 ORTHO05D003652 1.7e-43 180.3 382 37.7
Hund04925 Selenicereus undatus HOM05D003043 ORTHO05D003652 2.2e-43 179.9 383 38.1
CANSAT54G1677 Cannabis sativa HOM05D003043 ORTHO05D003652 2.9e-43 179.5 380 37.9
CSS0005170 Camellia sinensis var. sinensis HOM05D003043 ORTHO05D003652 5.0e-43 178.7 374 38.0
Hma1.2p1_0615F.1_g189710 Hydrangea macrophylla HOM05D003043 ORTHO05D003652 8.5e-43 177.9 377 37.9
Nn2g11182 Nelumbo nucifera HOM05D003043 ORTHO05D003652 8.5e-43 177.9 380 37.9
CAN.G394.74 Capsicum annuum HOM05D003043 ORTHO05D003652 1.1e-42 177.6 380 37.1
Sc12g0001270 Simmondsia chinensis HOM05D003043 ORTHO05D003652 1.1e-42 177.6 382 37.7
arahy.Tifrunner.gnm1.ann1.HN9X0L Arachis hypogaea HOM05D003043 ORTHO05D003652 1.5e-42 177.2 383 36.6
Lsat_1_v5_gn_5_169481 Lactuca sativa HOM05D003043 ORTHO05D003652 2.5e-42 176.4 379 37.2
Peaxi162Scf00481g00322 Petunia axillaris HOM05D003043 ORTHO05D003652 2.5e-42 176.4 380 37.9
Prupe.6G071100 Prunus persica HOM05D003043 ORTHO05D003652 2.5e-42 176.4 382 37.7
Medtr4g064780 Medicago truncatula HOM05D003043 ORTHO05D003652 3.2e-42 176.0 384 37.2
Nitab4.5_0006916g0010 Nicotiana tabacum HOM05D003043 ORTHO05D003652 4.2e-42 175.6 380 37.6
ATR0559G340 Amborella trichopoda HOM05D003043 ORTHO05D003652 1.6e-41 173.7 379 36.9
Ca_20619_v3 Cicer arietinum L. HOM05D003043 ORTHO05D003652 1.6e-41 173.7 384 36.7
Migut.D00882 Erythranthe guttata HOM05D003043 ORTHO05D003652 2.1e-41 173.3 377 37.1
Eucgr.B02312 Eucalyptus grandis HOM05D003043 ORTHO05D003652 2.1e-41 173.3 317 41.0
SHI02287 Sapria himalayana HOM05D003043 ORTHO05D003652 2.1e-41 173.3 383 36.3
EL10Ac7g16059 Beta vulgaris HOM05D003043 ORTHO05D003652 2.7e-41 172.9 379 36.4
TPR.G23580 Trifolium pratense HOM05D003043 ORTHO05D003652 2.7e-41 172.9 383 35.8
Ah.15g098580 Amaranthus hybridus HOM05D003043 ORTHO05D003652 3.6e-41 172.6 376 37.0
AUR62001746 Chenopodium quinoa HOM05D003043 ORTHO05D003652 3.6e-41 172.6 380 36.6
Psat7g209800 Pisum sativum HOM05D003043 ORTHO05D003652 3.6e-41 172.6 384 37.5
MBI14_g08021_MAGBIO Magnolia biondii HOM05D003043 ORTHO05D003652 6.1e-41 171.8 386 37.6
FAN04G2806 Fragaria x ananassa HOM05D003043 ORTHO05D003652 1.0e-40 171.0 421 35.4
Aqoxy2G02292 Aquilegia oxysepala HOM05D003043 ORTHO05D003652 5.2e-40 168.7 383 37.1
PSO063G2647 Papaver somniferum HOM05D003043 ORTHO05D003652 5.2e-40 168.7 385 36.6
PSO339G4558 Papaver somniferum HOM05D003043 ORTHO05D003652 5.2e-40 168.7 385 36.6
arahy.Tifrunner.gnm1.ann1.119CG3 Arachis hypogaea HOM05D003043 ORTHO05D003652 8.8e-40 167.9 383 35.0
CDE04G0292 Ceratophyllum demersum HOM05D003043 ORTHO05D003652 8.8e-40 167.9 384 36.2
Ah.08g219900 Amaranthus hybridus HOM05D003043 ORTHO05D003652 3.3e-39 166.0 385 35.3
BcaC04g19797 Brassica carinata HOM05D003043 ORTHO05D003652 3.3e-39 166.0 379 35.1
C09p51560 Brassica napus HOM05D003043 ORTHO05D003652 3.3e-39 166.0 379 35.1
BraA10t43731Z Brassica rapa HOM05D003043 ORTHO05D003652 3.3e-39 166.0 379 35.4
A10p16480 Brassica napus HOM05D003043 ORTHO05D003652 4.4e-39 165.6 379 35.4
Lj2A1068G37 Lonicera japonica HOM05D003043 ORTHO05D003652 5.7e-39 165.2 382 35.1
Rhsim13G0077600 Rhododendron simsii HOM05D003043 ORTHO05D003652 9.7e-39 164.5 385 34.8
SGA_v2.0_scaffold69G23225 Striga asiatica HOM05D003043 ORTHO05D003652 9.7e-39 164.5 381 34.6
SGA_v2.0_scaffold66G22395 Striga asiatica HOM05D003043 ORTHO05D003652 1.3e-38 164.1 371 36.7
Dinv42985 Davidia involucrata HOM05D003043 ORTHO05D003652 2.2e-38 163.3 363 35.5
Dinv43114 Davidia involucrata HOM05D003043 ORTHO05D003652 2.2e-38 163.3 363 35.5
Nitab4.5_0000463g0160 Nicotiana tabacum HOM05D003043 ORTHO05D003652 3.7e-38 162.5 316 39.9
PSO513G0035 Papaver somniferum HOM05D003043 ORTHO05D003652 3.7e-38 162.5 378 35.7
AUR62020025 Chenopodium quinoa HOM05D003043 ORTHO05D003652 6.3e-38 161.8 315 39.0
TPR.G28610 Trifolium pratense HOM05D003043 ORTHO05D003652 6.3e-38 161.8 383 34.2
Ca_01305_v3 Cicer arietinum L. HOM05D003043 ORTHO05D003652 1.1e-37 161.0 384 34.4
BcaB08g36270 Brassica carinata HOM05D003043 ORTHO05D003652 1.8e-37 160.2 379 34.8
PSO339G0816 Papaver somniferum HOM05D003043 ORTHO05D003652 1.8e-37 160.2 378 35.4
TPR.G6840 Trifolium pratense HOM05D003043 ORTHO05D003652 4.1e-37 159.1 386 33.9
vmacro03033 Vaccinium macrocarpon HOM05D003043 ORTHO05D003652 4.1e-37 159.1 385 34.5
Os03g0271200 Oryza sativa ssp. japonica HOM05D003043 ORTHO05D003652 1.6e-36 157.1 382 34.0
Medtr2g097700 Medicago truncatula HOM05D003043 ORTHO05D003652 2.0e-36 156.8 384 33.9
Carub.0008s1993 Capsella rubella HOM05D003043 ORTHO05D003652 5.9e-36 155.2 377 33.7
HPP92_010725 Vanilla planifolia HOM05D003043 ORTHO05D003652 2.2e-35 153.3 387 35.1
DCAR_005948 Daucus carota HOM05D003043 ORTHO05D003652 8.5e-35 151.4 377 34.0
Zm00001eb012140 Zea mays HOM05D003043 ORTHO05D003652 2.5e-34 149.8 382 32.5
Zm00001eb397790 Zea mays HOM05D003043 ORTHO05D003652 4.2e-34 149.1 382 32.5
RcHm_v2.0_Chr5g0052291 Rosa chinensis HOM05D003043 ORTHO05D003652 1.2e-31 141.0 381 33.9
FvH4_3g28760 Fragaria vesca HOM05D003043 ORTHO05D003652 1.3e-30 137.5 381 33.9
FAN16G2241 Fragaria x ananassa HOM05D003043 ORTHO05D003652 1.3e-30 137.5 382 33.5
FAN21G2726 Fragaria x ananassa HOM05D003043 ORTHO05D003652 2.2e-30 136.7 379 33.8
Lj2C969T9 Lonicera japonica HOM05D003043 ORTHO05D003652 1.1e-29 134.4 319 33.5
QL01p030425 Quercus lobata HOM05D003043 ORTHO05D003652 1.1e-29 134.4 109 69.7
Haze_24153 Corylus avellana HOM05D003043 ORTHO05D003652 3.1e-29 132.9 150 54.0
GSVIVG01024913001 Vitis vinifera HOM05D003043 ORTHO05D003652 4.1e-29 132.5 109 68.8
Oeu053885.1 Olea europaea HOM05D003043 ORTHO05D003652 7.0e-29 131.7 109 68.8
Cfa011547 Carpinus fangiana HOM05D003043 ORTHO05D003652 9.1e-29 131.3 97 72.2
Haze_24151 Corylus avellana HOM05D003043 ORTHO05D003652 9.1e-29 131.3 97 72.2
AagrBONN_evm.TU.Sc2ySwM_362.1395 Anthoceros agrestis HOM05D003043 ORTHO05D003652 4.5e-28 129.0 316 31.0
BolC9t58015H Brassica oleracea HOM05D003043 ORTHO05D003652 4.5e-28 129.0 96 67.7
Actinidia08540 Actinidia chinensis HOM05D003043 ORTHO05D003652 5.9e-28 128.6 301 37.2
CDE06G2097 Ceratophyllum demersum HOM05D003043 ORTHO05D003652 1.0e-27 127.9 109 67.0
BcaB05g23534 Brassica carinata HOM05D003043 ORTHO05D003652 2.2e-27 126.7 278 37.4
Os11g0116500 Oryza sativa ssp. japonica HOM05D003043 ORTHO05D003652 6.5e-27 125.2 311 34.7
FAN11G2976 Fragaria x ananassa HOM05D003043 ORTHO05D003652 1.9e-26 123.6 320 35.0
COL.COLO4_18570 Corchorus olitorius HOM05D003043 ORTHO05D003652 3.6e-25 119.4 341 32.0
SMO184G0008 Selaginella moellendorffii HOM05D003043 ORTHO05D003652 1.0e-24 117.9 282 33.3
Mapoly0040s0008 Marchantia polymorpha HOM05D003043 ORTHO05D003652 8.8e-24 114.8 315 28.9
CARHR285600 Cardamine hirsuta HOM05D003043 ORTHO05D003652 2.6e-23 113.2 96 62.5
Pp3c7_23430 Physcomitrium patens HOM05D003043 ORTHO05D003652 7.5e-23 111.7 95 58.9
SMO340G0290 Selaginella moellendorffii HOM05D003043 ORTHO05D003652 1.7e-22 110.5 104 59.6
Pp3c6_10010 Physcomitrium patens HOM05D003043 ORTHO05D003652 2.8e-22 109.8 95 57.9
Pp3c5_23090 Physcomitrium patens HOM05D003043 ORTHO05D003652 8.3e-22 108.2 95 57.9
AT1G35860 Arabidopsis thaliana HOM05D003043 ORTHO05D003652 1.4e-21 107.5 97 59.8
CBR_g26093 Chara braunii HOM05D003043 ORTHO05D003652 1.1e-18 97.8 96 52.1
ECA247G2855 Erigeron canadensis HOM05D003043 ORTHO05D003652 1.1e-18 97.8 308 29.2
MCO13G202 Micromonas commoda HOM05D003043 ORTHO05D003652 1.0e-16 91.3 95 49.5
SEGI_38607 Sequoiadendron giganteum HOM05D003043 ORTHO05D003652 1.8e-16 90.5 82 57.3
DCAR_007432 Daucus carota HOM05D003043 ORTHO05D003652 4.0e-16 89.4 340 28.2
PRCOL_00000105 Prasinoderma coloniale HOM05D003043 ORTHO05D003652 1.5e-15 87.4 95 46.3
Oeu053870.2 Olea europaea HOM05D003043 ORTHO05D003652 2.0e-15 87.0 343 26.8
AagrBONN_evm.TU.Sc2ySwM_228.3638 Anthoceros agrestis HOM05D003043 ORTHO05D003652 8.3e-14 81.6 97 42.3
Actinidia26677 Actinidia chinensis HOM05D003043 ORTHO05D003652 1.1e-13 81.3 144 38.2
Migut.J01162 Erythranthe guttata HOM05D003043 ORTHO05D003652 1.8e-13 80.5 392 24.5
Migut.C00447 Erythranthe guttata HOM05D003043 ORTHO05D003652 7.0e-13 78.6 382 24.3
Actinidia33774 Actinidia chinensis HOM05D003043 ORTHO05D003652 2.7e-12 76.6 155 35.5
CiPaw.13G090000 Carya illinoinensis HOM05D003043 ORTHO05D003652 1.0e-11 74.7 71 63.4
Pp3c20_17440 Physcomitrium patens HOM05D003043 ORTHO05D003652 3.6e-09 66.2 63 49.2
SGA_v2.0_scaffold14G07084 Striga asiatica HOM05D003043 ORTHO05D003652 1.0e-08 64.7 112 36.6
Oeu023933.1 Olea europaea HOM05D003043 ORTHO05D003652 1.4e-08 64.3 103 39.8
TPR.G39921 Trifolium pratense HOM05D003043 ORTHO05D003652 4.4e-07 59.3 84 42.9
AL6G42790 Arabidopsis lyrata HOM05D003043 ORTHO05D003652 2.2e-06 57.0 87 46.0
SMO169G0056 Selaginella moellendorffii HOM05D003043 ORTHO05D003652 2.9e-06 56.6 110 33.6
SMO202G0065 Selaginella moellendorffii HOM05D003043 ORTHO05D003652 2.9e-06 56.6 110 33.6


User provided reference genes

Program Settings