Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23181 Brassica carinata HOM05D000823 ORTHO05D000088 9.6e-175 616.7 303 100.0
C09p11350 Brassica napus HOM05D000823 ORTHO05D000088 4.0e-165 584.7 333 89.2
BcaC04g23179 Brassica carinata HOM05D000823 ORTHO05D000088 2.1e-150 535.8 333 82.9
BraA09t36609Z Brassica rapa HOM05D000823 ORTHO05D000088 5.9e-140 501.1 334 79.6
BolC9t54023H Brassica oleracea HOM05D000823 ORTHO05D000088 1.9e-138 496.1 333 78.7
A09p09600 Brassica napus HOM05D000823 ORTHO05D000088 6.9e-133 477.6 333 76.6
BcaB04g20081 Brassica carinata HOM05D000823 ORTHO05D000088 9.7e-119 430.6 334 71.3
BcaB04g20080 Brassica carinata HOM05D000823 ORTHO05D000088 3.5e-116 422.2 337 69.1
Sp2g29690 Schrenkiella parvula HOM05D000823 ORTHO05D000088 5.9e-84 315.1 365 54.5
A07p16940 Brassica napus HOM05D000823 ORTHO05D000088 2.8e-73 279.6 367 50.4
BraA07t29420Z Brassica rapa HOM05D000823 ORTHO05D000088 2.8e-73 279.6 367 50.4
BcaC06g34772 Brassica carinata HOM05D000823 ORTHO05D000088 1.8e-72 276.9 367 49.9
C07p24780 Brassica napus HOM05D000823 ORTHO05D000088 1.8e-72 276.9 367 49.9
BcaB02g09965 Brassica carinata HOM05D000823 ORTHO05D000088 1.3e-70 270.8 354 48.9
Thhalv10004496m.g Eutrema salsugineum HOM05D000823 ORTHO05D000088 1.3e-70 270.8 384 47.7
AL8G44400 Arabidopsis lyrata HOM05D000823 ORTHO05D000088 2.8e-65 253.1 357 44.8
CARHR280710 Cardamine hirsuta HOM05D000823 ORTHO05D000088 1.8e-64 250.4 355 45.9
AT5G66980 Arabidopsis thaliana HOM05D000823 ORTHO05D000088 7.6e-63 245.0 356 42.4
Carub.0008s2753 Capsella rubella HOM05D000823 ORTHO05D000088 2.9e-54 216.5 344 41.3
Aa31LG1G15520 Aethionema arabicum HOM05D000823 ORTHO05D000088 9.0e-40 168.3 348 34.2
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 7.6e-23 112.1 301 31.2
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 9.4e-21 105.1 332 27.1
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 5.1e-19 99.4 337 27.9
THA.LOC104822792 Tarenaya hassleriana HOM05D000823 ORTHO05D000088 1.1e-16 91.7 263 31.9
CsaV3_6G042810 Cucumis sativus L. HOM05D000823 ORTHO05D000088 2.0e-15 87.4 315 25.4
Rhsim10G0125600 Rhododendron simsii HOM05D000823 ORTHO05D000088 1.7e-14 84.3 327 27.2
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 6.5e-14 82.4 315 24.1
TWI38G2045 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.9e-13 80.9 276 26.1
TWI39G0837 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.9e-13 80.9 303 23.8
arahy.Tifrunner.gnm1.ann1.K3F6Y2 Arachis hypogaea HOM05D000823 ORTHO05D000088 7.2e-13 79.0 298 26.5
Manes.13G131000 Manihot esculenta HOM05D000823 ORTHO05D000088 9.4e-13 78.6 320 25.6
Potri.007G035500 Populus trichocarpa HOM05D000823 ORTHO05D000088 9.4e-13 78.6 315 25.7
CSS0000969 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 1.2e-12 78.2 347 23.3
CSS0025372 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 1.2e-12 78.2 347 23.3
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 1.6e-12 77.8 314 24.5
arahy.Tifrunner.gnm1.ann1.4VG87B Arachis hypogaea HOM05D000823 ORTHO05D000088 3.6e-12 76.6 295 25.8
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.0e-11 75.1 336 25.3
Sabra07G0031200 Salix brachista HOM05D000823 ORTHO05D000088 2.3e-11 73.9 327 25.4
CiPaw.01G027400 Carya illinoinensis HOM05D000823 ORTHO05D000088 5.1e-11 72.8 327 23.9
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 6.7e-11 72.4 260 25.0
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.1e-10 71.6 315 25.7
Sed0023289 Sechium edule HOM05D000823 ORTHO05D000088 1.7e-09 67.8 306 25.2
Haze_15178 Corylus avellana HOM05D000235 ORTHO05D000147 2.2e-09 67.4 251 23.9
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.4e-08 64.7 319 25.7
BolC7t43003H Brassica oleracea HOM05D000823 ORTHO05D000088 3.1e-08 63.5 90 46.7
MBI16_g31478_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 4.1e-08 63.2 262 25.6
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 9.1e-08 62.0 248 23.8
Cpa.g.sc15.87 Carica papaya HOM05D000823 ORTHO05D000088 5.9e-07 59.3 109 28.4
Haze_08007 Corylus avellana HOM05D000823 ORTHO05D000088 1.3e-06 58.2 86 27.9
Haze_08013 Corylus avellana HOM05D000823 ORTHO05D000088 1.3e-06 58.2 86 27.9
Dinv26765 Davidia involucrata HOM05D008110 ORTHO05D024989 2.2e-06 57.4 90 31.1
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 6.5e-06 55.8 305 24.9
Rhsim11G0170700 Rhododendron simsii HOM05D008110 ORTHO05D000088 6.5e-06 55.8 87 28.7


User provided reference genes

Program Settings