Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 5.9e-126 454.1 219 100.0
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 5.9e-126 454.1 219 100.0
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.5e-124 448.7 220 98.6
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.6e-115 419.5 219 91.3
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-115 419.1 219 91.8
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 6.2e-115 417.5 219 92.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 7.8e-110 400.6 219 89.5
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.3e-109 399.1 219 89.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 6.6e-109 397.5 219 88.6
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 4.7e-107 391.3 219 89.0
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.4e-105 385.2 219 85.4
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 6.4e-104 380.9 219 84.5
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 7.1e-103 377.5 211 87.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 6.0e-102 374.4 219 84.5
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 6.0e-102 374.4 219 84.5
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 1.5e-100 369.8 219 83.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.5e-100 369.0 219 83.1
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.3e-100 367.5 219 80.8
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 9.5e-100 367.1 219 83.1
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.3e-96 356.7 220 78.2
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.7e-96 355.1 220 79.5
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.4e-95 353.2 208 84.1
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.4e-95 353.2 221 76.9
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 2.4e-95 352.4 220 76.8
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 7.1e-95 350.9 220 77.7
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.9e-93 345.1 220 77.7
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.2e-91 340.1 220 76.4
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.2e-89 333.6 222 73.9
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 5.8e-89 331.3 238 70.6
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 5.8e-89 331.3 222 73.4
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 6.4e-88 327.8 222 74.8
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 8.4e-88 327.4 222 74.8
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.4e-87 326.6 222 74.8
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.4e-87 326.6 222 74.3
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 3.2e-87 325.5 223 72.6
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 4.2e-87 325.1 223 73.1
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.2e-87 325.1 223 72.6
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 4.2e-87 325.1 220 74.5
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.4e-87 324.7 223 72.2
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 7.1e-87 324.3 223 72.6
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 9.3e-87 323.9 222 72.5
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 9.3e-87 323.9 222 73.9
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 9.3e-87 323.9 223 72.6
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.1e-86 322.8 223 72.2
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.1e-86 322.8 222 72.5
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 2.7e-86 322.4 222 73.9
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.5e-86 322.0 222 73.0
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.5e-86 322.0 224 72.8
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 3.5e-86 322.0 220 72.3
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.6e-86 321.6 222 73.0
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 6.0e-86 321.2 222 73.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 7.8e-86 320.9 222 73.0
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 7.8e-86 320.9 222 73.4
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.0e-85 320.5 222 72.5
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.3e-85 320.1 222 72.1
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.7e-85 319.7 221 72.4
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 3.9e-85 318.5 222 71.6
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.6e-85 317.8 221 70.1
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 6.6e-85 317.8 222 71.2
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.5e-84 315.8 222 70.7
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 4.3e-84 315.1 222 70.7
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 7.3e-84 314.3 222 70.3
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.3e-83 313.5 221 69.7
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.6e-83 313.2 221 70.6
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.6e-83 313.2 193 76.7
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.6e-83 313.2 219 69.4
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.1e-83 312.8 222 72.1
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.8e-83 311.6 221 71.5
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 8.1e-83 310.8 222 70.7
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 8.1e-83 310.8 222 69.4
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.1e-82 310.5 193 75.1
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 2.4e-82 309.3 221 70.6
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 6.9e-82 307.8 193 75.6
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.2e-81 307.0 226 72.1
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-81 307.0 226 72.1
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.2e-81 307.0 222 69.8
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.5e-81 306.6 193 76.2
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.6e-81 305.8 222 70.3
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 7.6e-81 304.3 222 67.6
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 9.9e-81 303.9 193 75.1
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 9.9e-81 303.9 196 75.0
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 2.9e-80 302.4 222 68.9
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 4.9e-80 301.6 194 74.7
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 6.4e-80 301.2 222 67.1
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 8.4e-80 300.8 221 71.9
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.1e-79 300.4 221 67.9
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.1e-79 300.4 223 68.2
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.4e-79 300.1 197 73.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 3.2e-79 298.9 231 67.1
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 9.3e-79 297.4 221 68.3
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 9.3e-79 297.4 221 68.3
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.1e-78 296.2 198 73.2
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 4.6e-78 295.0 222 65.8
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 4.6e-78 295.0 222 65.8
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 7.9e-78 294.3 200 73.0
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 7.9e-78 294.3 223 67.3
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.6e-77 291.2 221 67.0
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 6.6e-77 291.2 234 65.4
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.1e-76 290.4 195 74.4
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.5e-76 290.0 198 72.2
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 9.6e-76 287.3 223 65.9
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.6e-75 286.6 222 66.7
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.1e-75 286.2 223 65.5
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.1e-75 284.3 194 71.1
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 2.4e-74 282.7 221 62.0
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 9.0e-74 280.8 194 69.6
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.7e-72 276.6 196 69.9
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 4.2e-71 271.9 212 64.2
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.5e-71 271.6 302 51.0
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 6.0e-70 268.1 219 61.2
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.1e-67 259.6 221 58.8
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.7e-67 258.8 220 59.1
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-66 256.5 205 63.9
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 3.1e-66 255.8 192 66.7
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 2.0e-65 253.1 220 55.0
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 5.8e-65 251.5 217 59.0
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 7.6e-65 251.1 291 49.5
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.2e-64 249.6 223 61.4
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 6.5e-64 248.1 216 57.4
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 3.0e-61 239.2 220 56.4
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 2.5e-60 236.1 179 67.6
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 5.7e-60 235.0 228 52.6
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.8e-59 232.6 173 67.1
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.4e-58 230.3 193 57.0
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 2.4e-58 229.6 169 68.0
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.7e-56 223.4 222 50.9
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 2.5e-55 219.5 165 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 4.2e-55 218.8 220 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 6.1e-54 214.9 198 55.6
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.1e-50 204.1 169 63.3
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.2e-49 200.7 160 66.2
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 3.4e-49 199.1 197 56.9
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 8.2e-43 177.9 190 51.6
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.8e-42 176.8 151 56.3
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.4e-42 176.4 93 83.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 5.3e-42 175.3 220 45.0
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.0e-41 173.3 165 55.2
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 5.7e-36 155.2 245 35.5
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 3.1e-34 149.4 222 35.1
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.7e-32 143.7 139 53.2
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.7e-30 136.3 84 75.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.8e-29 133.7 219 36.5
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 4.4e-28 129.0 84 66.7
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 3.2e-23 112.8 101 63.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.2e-20 104.4 140 41.4
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.1e-18 97.8 75 68.0
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 5.5e-15 85.5 93 47.3
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 4.5e-09 65.9 187 24.1
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 5.6e-07 58.9 143 33.6


User provided reference genes

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