Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23169 Brassica carinata HOM05D000034 ORTHO05D016699 6.7e-56 220.3 102 100.0
BcaC08g43145 Brassica carinata HOM05D000034 ORTHO05D000037 9.7e-55 216.5 102 98.0
BcaC02g11757 Brassica carinata HOM05D000034 ORTHO05D016699 1.2e-49 199.5 101 92.1
BcaB05g23950 Brassica carinata HOM05D000034 ORTHO05D000037 7.0e-45 183.7 103 82.5
BcaC01g06241 Brassica carinata HOM05D000034 ORTHO05D000037 3.8e-43 177.9 103 82.5
C06p06110 Brassica napus HOM05D001371 ORTHO05D001319 9.4e-42 173.3 84 94.0
C04p69020 Brassica napus HOM05D000034 ORTHO05D000037 7.5e-39 163.7 102 71.6
BcaB05g22061 Brassica carinata HOM05D000034 ORTHO05D016699 1.2e-36 156.4 88 84.1
BcaB05g24182 Brassica carinata HOM05D000034 ORTHO05D016699 2.7e-36 155.2 88 83.0
BcaC05g27115 Brassica carinata HOM05D000034 ORTHO05D016699 2.5e-34 148.7 88 79.5
BcaC05g25828 Brassica carinata HOM05D000034 ORTHO05D000037 4.2e-34 147.9 105 64.8
BcaB04g16972 Brassica carinata HOM05D000034 ORTHO05D000037 2.9e-27 125.2 124 51.6
C06p13580 Brassica napus HOM05D000034 ORTHO05D000037 2.9e-27 125.2 119 52.9
BcaC01g01276 Brassica carinata HOM05D000034 ORTHO05D000037 3.4e-23 111.7 136 48.5
BcaC03g15863 Brassica carinata HOM05D000034 ORTHO05D016699 4.3e-18 94.7 67 64.2
BcaC04g20692 Brassica carinata HOM05D000034 ORTHO05D016699 7.3e-18 94.0 67 64.2
BcaC09g51946 Brassica carinata HOM05D000034 ORTHO05D016699 3.6e-17 91.7 67 62.7
BcaC01g02745 Brassica carinata HOM05D006735 ORTHO05D009558 2.0e-15 85.9 77 55.8
RcHm_v2.0_Chr4g0414051 Rosa chinensis HOM05D000034 ORTHO05D000037 6.6e-11 70.9 98 44.9
RcHm_v2.0_Chr6g0292381 Rosa chinensis HOM05D000034 ORTHO05D000037 4.3e-10 68.2 98 43.9
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 2.8e-09 65.5 103 38.8
Atru.chr10.1596 Acer truncatum HOM05D000034 ORTHO05D000037 4.7e-09 64.7 93 37.6
arahy.Tifrunner.gnm1.ann1.TEB0R7 Arachis hypogaea HOM05D000034 ORTHO05D000037 6.2e-09 64.3 100 39.0
FvH4_4g20922 Fragaria vesca HOM05D000034 ORTHO05D000037 6.2e-09 64.3 103 41.7
FvH4_5g23912 Fragaria vesca HOM05D000034 ORTHO05D000037 6.2e-09 64.3 103 41.7
arahy.Tifrunner.gnm1.ann1.JL1WEN Arachis hypogaea HOM05D000034 ORTHO05D000037 8.0e-09 63.9 99 39.4
FvH4_7g19211 Fragaria vesca HOM05D000034 ORTHO05D000037 8.0e-09 63.9 103 41.7
THA.LOC109117196 Tarenaya hassleriana HOM05D000034 ORTHO05D000037 8.0e-09 63.9 67 52.2
arahy.Tifrunner.gnm1.ann1.JE1DTX Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-08 63.2 103 37.9
arahy.Tifrunner.gnm1.ann1.Y4Z60F Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-08 63.2 103 37.9
arahy.Tifrunner.gnm1.ann1.UAQH0I Arachis hypogaea HOM05D000034 ORTHO05D000037 1.8e-08 62.8 103 37.9
FvH4_2g04530 Fragaria vesca HOM05D000034 ORTHO05D000037 2.3e-08 62.4 95 40.0
FvH4_2g11121 Fragaria vesca HOM05D000034 ORTHO05D000037 2.3e-08 62.4 95 40.0
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 4.0e-08 61.6 99 38.4
AL8G19300 Arabidopsis lyrata HOM05D004230 ORTHO05D000037 5.2e-08 61.2 84 41.7
arahy.Tifrunner.gnm1.ann1.0FUF30 Arachis hypogaea HOM05D000034 ORTHO05D000037 5.2e-08 61.2 99 36.4
arahy.Tifrunner.gnm1.ann1.B5SYFK Arachis hypogaea HOM05D000034 ORTHO05D000037 5.2e-08 61.2 99 36.4
arahy.Tifrunner.gnm1.ann1.FATU7S Arachis hypogaea HOM05D000034 ORTHO05D000037 5.2e-08 61.2 99 36.4
arahy.Tifrunner.gnm1.ann1.HLEK2P Arachis hypogaea HOM05D000034 ORTHO05D000037 5.2e-08 61.2 99 36.4
C05p34990 Brassica napus HOM05D000034 ORTHO05D000037 5.2e-08 61.2 52 57.7
FvH4_3g29911 Fragaria vesca HOM05D000034 ORTHO05D000037 5.2e-08 61.2 95 41.1
Medtr8g073195 Medicago truncatula HOM05D000034 ORTHO05D016667 5.2e-08 61.2 97 36.1
ECA233G0273 Erigeron canadensis HOM05D000034 ORTHO05D000037 8.9e-08 60.5 91 38.5
Oeu043894.1 Olea europaea HOM05D000034 ORTHO05D000037 8.9e-08 60.5 99 39.4
RcHm_v2.0_Chr7g0199291 Rosa chinensis HOM05D000034 ORTHO05D000037 1.5e-07 59.7 98 39.8
MD11G1151600 Malus domestica HOM05D000034 ORTHO05D000037 2.0e-07 59.3 78 46.2
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 2.6e-07 58.9 69 43.5
arahy.Tifrunner.gnm1.ann1.WA83K8 Arachis hypogaea HOM05D000034 ORTHO05D000037 3.4e-07 58.5 79 41.8
AUR62020810 Chenopodium quinoa HOM05D000034 ORTHO05D000037 3.4e-07 58.5 108 40.7
HanXRQChr07g0199291 Helianthus annuus HOM05D000034 ORTHO05D000037 3.4e-07 58.5 104 34.6
Atru.chr10.2194 Acer truncatum HOM05D000034 ORTHO05D000037 4.4e-07 58.2 93 39.8
FvH4_2g13361 Fragaria vesca HOM05D000034 ORTHO05D000037 4.4e-07 58.2 91 41.8
CANSAT01G2537 Cannabis sativa HOM05D000034 ORTHO05D000037 7.5e-07 57.4 93 37.6
CANSAT01G2719 Cannabis sativa HOM05D000034 ORTHO05D000037 7.5e-07 57.4 93 37.6
CANSAT78G0685 Cannabis sativa HOM05D000034 ORTHO05D000037 7.5e-07 57.4 93 37.6
CANSAT78G1769 Cannabis sativa HOM05D000034 ORTHO05D000037 7.5e-07 57.4 93 37.6
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 7.5e-07 57.4 108 39.8
arahy.Tifrunner.gnm1.ann1.VJTY5B Arachis hypogaea HOM05D000034 ORTHO05D000037 9.8e-07 57.0 99 34.3
AUR62020230 Chenopodium quinoa HOM05D000034 ORTHO05D000037 9.8e-07 57.0 108 40.7
C09p41550 Brassica napus HOM05D000034 ORTHO05D000037 1.3e-06 56.6 42 64.3
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 1.3e-06 56.6 95 40.0
arahy.Tifrunner.gnm1.ann1.MFJS9C Arachis hypogaea HOM05D000034 ORTHO05D000037 1.7e-06 56.2 92 37.0
HanXRQChr10g0313541 Helianthus annuus HOM05D000034 ORTHO05D000037 1.7e-06 56.2 104 35.6
arahy.Tifrunner.gnm1.ann1.D4V5SR Arachis hypogaea HOM05D000034 ORTHO05D000037 2.2e-06 55.8 97 39.2
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 2.2e-06 55.8 90 40.0
Lj6g0020842 Lotus japonicus HOM05D000034 ORTHO05D000037 2.2e-06 55.8 101 32.7
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 2.2e-06 55.8 55 49.1
Psat5g170880 Pisum sativum HOM05D000034 ORTHO05D000037 2.9e-06 55.5 97 36.1
Sopen01g006370 Solanum pennellii HOM05D000034 ORTHO05D000037 2.9e-06 55.5 86 34.9
AL5G20880 Arabidopsis lyrata HOM05D000034 ORTHO05D000037 3.7e-06 55.1 53 49.1
arahy.Tifrunner.gnm1.ann1.MKXD2W Arachis hypogaea HOM05D000034 ORTHO05D000037 3.7e-06 55.1 68 42.6
CANSAT25G0317 Cannabis sativa HOM05D000034 ORTHO05D000037 3.7e-06 55.1 52 50.0
CANSAT25G1749 Cannabis sativa HOM05D000034 ORTHO05D000037 3.7e-06 55.1 52 50.0
ECA238G3844 Erigeron canadensis HOM05D000034 ORTHO05D000037 3.7e-06 55.1 53 43.4
CANSAT11G0430 Cannabis sativa HOM05D000034 ORTHO05D000037 4.9e-06 54.7 52 50.0
CANSAT56G4166 Cannabis sativa HOM05D000034 ORTHO05D000037 4.9e-06 54.7 52 50.0
ECA240G4515 Erigeron canadensis HOM05D000034 ORTHO05D000037 4.9e-06 54.7 52 44.2
TWI14G0766 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 4.9e-06 54.7 95 38.9
TWI39G1305 Tripterygium wilfordii HOM05D000034 ORTHO05D000037 4.9e-06 54.7 95 38.9
ECA234G2067 Erigeron canadensis HOM05D000034 ORTHO05D000037 6.4e-06 54.3 52 44.2
Atru.chr7.1288 Acer truncatum HOM05D000034 ORTHO05D014273 8.3e-06 53.9 90 35.6
Atru.chr8.821 Acer truncatum HOM05D000034 ORTHO05D000037 8.3e-06 53.9 73 41.1
Oeu028394.1 Olea europaea HOM05D000034 ORTHO05D000037 8.3e-06 53.9 53 49.1
QL10p052324 Quercus lobata HOM05D000034 ORTHO05D000037 8.3e-06 53.9 42 52.4
Rhsim04G0159800 Rhododendron simsii HOM05D000034 ORTHO05D000037 8.3e-06 53.9 95 31.6
TPR.G30701 Trifolium pratense HOM05D000034 ORTHO05D000037 8.3e-06 53.9 55 47.3


User provided reference genes

Program Settings