Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 4.5e-107 391.3 207 100.0
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 8.4e-106 387.1 204 100.0
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-99 365.9 193 99.5
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 3.8e-98 361.7 191 100.0
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.9e-94 349.4 184 99.5
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 1.3e-90 336.7 210 89.0
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 5.1e-87 324.7 206 85.4
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 1.1e-86 323.6 205 84.9
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 5.7e-86 321.2 194 88.1
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 5.7e-86 321.2 194 88.1
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 5.7e-86 321.2 194 88.1
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 2.2e-82 309.3 206 81.6
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 3.8e-82 308.5 203 84.2
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 8.5e-82 307.4 201 84.6
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 7.2e-81 304.3 203 84.2
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 2.0e-78 296.2 192 84.9
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.8e-76 289.7 191 83.8
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 2.3e-71 272.7 203 76.8
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 5.7e-70 268.1 191 75.4
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 4.2e-65 251.9 160 86.2
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 2.6e-62 242.7 204 65.7
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 9.7e-62 240.7 210 66.2
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 3.7e-61 238.8 210 65.7
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.8e-60 236.5 191 66.0
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.1e-60 235.3 193 65.8
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 9.1e-60 234.2 187 67.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.2e-59 233.8 193 65.3
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.6e-59 233.4 204 64.2
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 2.0e-59 233.0 206 63.1
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.0e-59 233.0 208 64.4
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.0e-58 230.7 235 59.1
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.3e-58 230.3 207 63.8
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.3e-58 230.3 185 65.4
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.3e-58 230.3 203 62.6
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.3e-58 230.3 190 64.7
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 3.8e-58 228.8 206 61.2
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 3.8e-58 228.8 199 64.8
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 5.0e-58 228.4 191 64.9
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-57 227.3 187 65.2
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.5e-57 226.9 206 61.7
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 2.5e-57 226.1 193 64.2
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.5e-57 226.1 218 61.9
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.2e-57 225.3 218 62.4
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 4.2e-57 225.3 200 62.5
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 7.2e-57 224.6 207 59.9
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 7.2e-57 224.6 201 63.7
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.2e-56 223.8 193 63.7
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.2e-56 223.8 188 64.9
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 3.6e-56 222.2 191 62.8
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 4.7e-56 221.9 191 62.3
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.0e-55 220.7 187 63.6
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.0e-55 220.7 186 63.4
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.8e-55 219.9 200 61.0
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.0e-55 218.8 197 58.4
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 6.8e-55 218.0 186 64.5
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 6.8e-55 218.0 197 61.9
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.5e-54 216.9 200 59.0
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.5e-54 216.9 200 59.5
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 2.0e-54 216.5 199 62.8
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 2.0e-54 216.5 205 56.1
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 2.6e-54 216.1 202 57.4
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 3.4e-54 215.7 207 59.4
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 3.4e-54 215.7 192 60.9
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.4e-54 215.7 191 61.8
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 3.4e-54 215.7 193 62.2
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 7.5e-54 214.5 200 59.5
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 9.8e-54 214.2 190 62.1
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 9.8e-54 214.2 213 57.3
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.2e-53 213.0 173 64.7
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.2e-53 213.0 197 61.9
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.8e-53 212.6 186 61.8
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.8e-53 211.8 190 60.5
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.1e-52 210.7 203 57.1
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-52 210.7 186 60.2
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.4e-52 209.5 203 57.1
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 4.1e-52 208.8 184 64.1
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 9.1e-52 207.6 194 60.8
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 2.0e-51 206.5 203 57.6
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 4.5e-51 205.3 190 61.1
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 5.9e-51 204.9 187 58.3
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.0e-50 204.1 191 60.7
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.0e-50 204.1 202 55.9
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.3e-50 203.8 203 57.6
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.7e-50 203.4 187 57.8
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.9e-49 199.9 193 57.5
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.9e-49 199.9 192 57.8
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.9e-49 199.9 231 51.1
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.5e-49 199.5 186 57.5
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 4.2e-49 198.7 214 53.3
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.4e-47 193.7 196 57.1
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 5.2e-47 191.8 210 52.9
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 6.8e-47 191.4 145 66.9
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.5e-46 190.3 145 66.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 3.4e-46 189.1 193 57.5
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.9e-45 185.3 184 59.2
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.4e-44 183.7 190 54.7
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.4e-44 183.7 195 52.8
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.4e-44 181.8 141 68.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.0e-43 179.9 247 46.6
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.7e-42 176.8 194 52.6
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-42 176.8 144 63.2
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-42 176.8 167 57.5
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.9e-42 176.0 203 48.8
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 3.8e-42 175.6 143 62.9
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.5e-41 173.7 117 71.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 9.5e-41 171.0 115 72.2
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 9.5e-41 171.0 113 81.4
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.1e-40 169.9 126 65.9
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 8.9e-39 164.5 111 67.6
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 2.0e-38 163.3 140 60.0
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 5.8e-38 161.8 110 70.9
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 4.9e-37 158.7 140 65.0
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.1e-36 157.5 116 64.7
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.1e-36 157.5 160 57.5
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 7.3e-33 144.8 187 50.8
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.5e-27 125.9 101 58.4
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.7e-26 123.6 83 73.5
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.3e-26 123.2 88 70.5
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.3e-25 119.0 118 60.2
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 9.5e-25 117.9 88 68.2
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 1.2e-24 117.5 127 56.7
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 5.2e-23 112.1 147 43.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 5.2e-23 112.1 182 40.1
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.7e-21 107.1 69 75.4
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 6.4e-21 105.1 208 35.1
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.7e-19 99.8 155 47.1
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 3.0e-18 96.3 124 46.8
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.5e-17 94.0 117 40.2
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.5e-17 93.2 103 52.4
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 1.1e-15 87.8 155 40.0
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 2.6e-14 83.2 59 62.7
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 9.9e-14 81.3 82 54.9
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 9.9e-14 81.3 83 51.8
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.9e-13 79.7 146 37.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 4.2e-12 75.9 67 59.7


User provided reference genes

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