Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 4.6e-118 427.9 222 100.0
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 7.4e-100 367.5 193 99.5
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 7.4e-100 367.5 193 99.5
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 8.2e-91 337.4 177 99.4
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 8.2e-91 337.4 177 99.4
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 3.6e-86 322.0 194 88.1
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 7.9e-86 320.9 198 88.4
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 7.9e-86 320.9 193 87.6
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-85 320.1 194 87.6
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.4e-85 320.1 194 87.6
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.4e-85 320.1 194 87.6
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 5.5e-79 298.1 193 85.0
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.2e-78 297.0 193 84.5
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.2e-78 297.0 191 85.3
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.4e-77 293.5 193 85.0
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 5.2e-77 291.6 193 81.9
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 8.8e-77 290.8 191 83.8
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 5.5e-71 271.6 192 75.5
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 2.3e-69 266.2 190 78.9
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.5e-63 246.9 193 68.4
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 2.7e-62 242.7 194 69.6
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 6.1e-62 241.5 145 89.0
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.0e-61 240.7 194 69.1
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 8.8e-61 237.7 191 66.0
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.0e-60 236.5 194 67.5
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.6e-60 236.1 191 66.5
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 4.4e-60 235.3 190 66.8
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 5.7e-60 235.0 187 67.9
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 7.5e-60 234.6 210 61.0
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.5e-60 234.6 191 66.0
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 2.2e-59 233.0 219 61.6
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.9e-59 231.9 203 65.5
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 6.3e-59 231.5 190 66.8
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 8.3e-59 231.1 193 64.8
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 8.3e-59 231.1 185 65.4
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 8.3e-59 231.1 209 62.2
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 8.3e-59 231.1 191 66.5
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.3e-59 231.1 190 64.7
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.4e-58 229.6 203 65.5
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.4e-58 229.6 192 64.6
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 4.1e-58 228.8 193 64.2
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 4.1e-58 228.8 191 66.0
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 5.4e-58 228.4 197 62.4
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.0e-58 228.0 187 65.2
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 3.5e-57 225.7 190 65.3
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 4.5e-57 225.3 192 66.1
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 5.9e-57 224.9 186 64.0
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 7.7e-57 224.6 188 64.9
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.7e-56 223.4 191 62.8
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.7e-56 223.4 211 60.7
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 2.3e-56 223.0 191 62.3
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 6.6e-56 221.5 186 63.4
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 8.6e-56 221.1 187 63.6
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.1e-55 220.7 193 62.7
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.9e-55 219.9 189 60.8
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 4.3e-55 218.8 186 64.5
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 4.3e-55 218.8 209 59.3
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 5.6e-55 218.4 208 58.7
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 7.3e-55 218.0 191 63.4
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 9.5e-55 217.6 208 58.2
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 9.5e-55 217.6 190 61.1
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 9.5e-55 217.6 190 62.6
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.2e-54 217.2 190 60.5
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.6e-54 216.9 191 61.8
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 2.1e-54 216.5 187 65.2
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.8e-54 216.1 190 61.1
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 6.1e-54 214.9 190 59.5
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.0e-53 214.2 190 60.5
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.4e-53 213.8 173 64.7
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.8e-53 213.4 186 61.8
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.8e-53 213.4 191 63.4
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 3.0e-53 212.6 190 60.5
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 8.9e-53 211.1 186 61.3
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 8.9e-53 211.1 186 60.2
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.0e-52 209.9 186 61.3
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 2.6e-52 209.5 184 64.1
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 7.5e-52 208.0 185 62.7
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.3e-51 207.2 210 57.1
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 2.9e-51 206.1 190 61.1
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 6.4e-51 204.9 170 62.4
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 6.4e-51 204.9 185 61.1
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 6.4e-51 204.9 190 58.9
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 8.3e-51 204.5 188 60.1
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.8e-50 203.4 170 61.8
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 7.0e-50 201.4 193 56.5
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 9.2e-50 201.1 193 57.5
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.2e-49 200.7 231 51.1
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.2e-49 200.7 186 58.1
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.6e-49 200.3 192 57.8
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.5e-47 193.0 193 58.0
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 2.5e-47 193.0 194 55.7
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.3e-47 192.6 145 66.9
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 7.3e-47 191.4 145 66.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.1e-46 189.9 193 57.5
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 3.1e-45 186.0 184 59.2
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 6.8e-45 184.9 190 54.7
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 8.9e-45 184.5 195 52.8
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.4e-44 182.6 141 68.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 5.8e-44 181.8 231 48.9
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.9e-43 178.7 186 52.7
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-42 177.6 167 57.5
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.4e-42 177.2 144 63.2
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.9e-42 176.8 179 54.2
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 3.2e-42 176.0 143 62.9
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 7.0e-42 174.9 117 71.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 9.2e-42 174.5 133 64.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.3e-40 170.6 117 70.1
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 5.6e-39 165.2 111 67.6
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 1.6e-38 163.7 140 60.0
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 3.6e-38 162.5 110 70.9
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 5.2e-37 158.7 116 64.7
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 5.2e-37 158.7 140 65.0
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.2e-36 157.5 160 57.5
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 7.5e-36 154.8 99 82.8
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.0e-33 145.2 187 50.8
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.2e-27 126.7 112 54.5
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-26 124.4 83 73.5
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.9e-26 123.6 88 70.5
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.6e-25 119.0 118 60.2
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.8e-25 118.2 88 68.2
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 1.3e-24 117.5 127 56.7
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 5.6e-23 112.1 147 43.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 5.6e-23 112.1 182 40.1
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.1e-21 107.8 195 36.4
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.8e-21 107.1 69 75.4
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.9e-19 99.8 155 47.1
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 3.2e-18 96.3 124 46.8
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 3.2e-18 96.3 120 39.2
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.7e-17 93.2 103 52.4
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 1.1e-15 87.8 155 40.0
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 2.1e-14 83.6 59 62.7
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-13 81.3 82 54.9
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 1.1e-13 81.3 83 51.8
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 3.1e-13 79.7 146 37.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 3.4e-12 76.3 50 70.0


User provided reference genes

Program Settings