Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 2.4e-234 815.1 402 100.0
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 2.4e-234 815.1 402 100.0
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 2.4e-234 815.1 402 100.0
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 3.2e-234 814.7 402 99.8
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 3.2e-234 814.7 402 99.8
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.6e-233 812.4 402 99.3
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.5e-231 805.8 402 98.3
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.5e-231 805.1 402 98.3
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.5e-231 805.1 402 98.3
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 7.3e-231 803.5 402 98.0
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 7.3e-231 803.5 402 98.0
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 7.3e-231 803.5 402 98.0
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 8.1e-230 800.0 402 97.0
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 2.0e-228 795.4 402 97.0
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.7e-227 792.3 402 96.0
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.7e-227 792.3 402 95.8
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.6e-225 785.8 402 95.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.3e-224 781.9 402 94.8
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 91.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 89.3
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 89.3
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.1
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.3
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.1
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 89.6
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 89.6
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 89.6
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 89.1
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 88.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 88.6
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.6
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.8
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 89.3
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 87.6
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.1
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 87.6
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 4.9e-211 737.6 401 88.3
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 89.1
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 87.6
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 87.8
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.8
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.1
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.8
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.1
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 89.1
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 88.3
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 87.6
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 88.3
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 88.3
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 88.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 88.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.6
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.6
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 88.1
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.6
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.6
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 88.1
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 87.8
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 87.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 88.1
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 6.0e-209 730.7 411 86.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 6.0e-209 730.7 402 88.6
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 88.6
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.3e-208 728.8 417 85.4
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 3.0e-208 728.4 402 86.6
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.0e-208 728.4 438 82.0
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 87.1
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 6.7e-208 727.2 402 87.3
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 6.7e-208 727.2 402 87.3
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 86.8
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.1
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 86.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 86.8
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 4.3e-207 724.5 402 85.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 4.3e-207 724.5 402 87.1
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 86.1
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 85.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.6
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 86.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 2.1e-206 722.2 402 85.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.8e-206 721.1 402 86.3
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 4.8e-206 721.1 398 86.9
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 6.2e-206 720.7 402 86.8
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 8.1e-206 720.3 402 86.6
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.4e-205 719.5 402 85.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 86.6
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 86.3
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 9.0e-205 716.8 402 85.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.2e-204 716.5 402 86.3
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 1.5e-204 716.1 416 84.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.5e-204 716.1 429 82.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.0e-204 715.7 402 84.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 4.5e-204 714.5 416 83.9
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.1e-202 709.9 401 85.5
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 2.5e-202 708.8 402 85.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 7.1e-202 707.2 402 85.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.8e-200 702.6 402 85.3
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 9.6e-199 696.8 402 81.8
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.8e-198 695.3 419 82.3
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.8e-198 695.3 402 84.6
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 3.7e-198 694.9 402 83.8
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.3e-197 691.0 400 82.5
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.4e-196 688.3 402 82.1
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 5.0e-195 684.5 441 77.1
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 6.7e-192 674.1 402 81.1
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 2.5e-191 672.2 375 85.6
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.8e-190 668.7 402 80.6
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 4.8e-190 667.9 402 82.1
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 78.6
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 2.6e-188 662.1 402 79.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.5e-186 655.6 357 88.2
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 7.9e-185 650.6 402 79.9
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.5e-183 646.4 360 85.3
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.2e-182 642.5 361 85.9
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.9e-178 629.4 401 74.8
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 3.6e-177 625.2 402 77.1
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.4e-176 623.2 402 73.9
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.0e-175 619.4 340 88.2
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 1.3e-171 606.7 402 71.4
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.7e-171 606.3 334 87.7
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.0e-171 604.7 403 71.7
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 6.5e-171 604.4 402 75.4
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.1e-170 603.6 403 72.2
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 7.2e-170 600.9 402 70.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.3e-163 580.1 401 68.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.6e-159 565.8 403 66.0
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.7e-159 564.7 402 67.4
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.6e-148 530.0 289 86.9
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 4.7e-145 518.5 403 68.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 2.5e-138 496.1 419 63.0
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.4e-136 490.3 402 64.7
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 3.7e-126 455.7 259 83.4
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 4.6e-124 448.7 394 56.1
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.1e-113 413.3 384 54.4
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 2.8e-113 412.9 276 75.0
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.2e-103 380.9 229 79.9
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 2.8e-97 359.8 219 79.9
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 2.4e-96 356.7 219 78.5
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 5.3e-96 355.5 219 77.6
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.8e-81 305.8 300 53.3
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.1e-76 290.4 163 85.9
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.9e-75 286.2 160 86.2
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 6.5e-54 215.7 116 89.7
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.2e-31 141.7 351 29.1
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 5.9e-31 139.4 86 80.2
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.7e-30 137.9 351 26.5
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.3e-17 95.1 47 93.6
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 3.0e-14 84.0 45 82.2
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-12 76.6 316 22.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 4.7e-12 76.6 72 58.3


User provided reference genes

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