Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 2.0e-82 308.9 145 100.0
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 2.0e-82 308.9 145 100.0
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 3.3e-80 301.6 146 97.3
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 9.5e-80 300.1 146 96.6
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 6.1e-79 297.4 146 96.6
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 2.9e-76 288.5 142 95.1
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 2.0e-74 282.3 140 91.4
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 3.5e-74 281.6 145 88.3
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.0e-73 280.0 147 89.1
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 3.9e-73 278.1 140 94.3
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.5e-72 276.2 145 89.0
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 3.7e-68 261.5 140 83.6
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.3e-60 236.5 154 70.1
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 2.4e-54 215.7 136 71.3
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 4.0e-54 214.9 139 69.8
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 6.8e-54 214.2 141 70.2
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 2.0e-53 212.6 147 69.4
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 2.6e-53 212.2 133 71.4
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 3.4e-53 211.8 144 68.1
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.4e-53 211.8 143 69.9
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 4.4e-53 211.5 140 67.9
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 4.4e-53 211.5 147 68.0
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 4.4e-53 211.5 140 70.0
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.9e-53 210.3 140 69.3
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 9.9e-53 210.3 135 70.4
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.3e-52 209.9 118 78.0
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.7e-52 209.5 139 69.8
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.9e-52 208.8 140 68.6
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.9e-52 208.8 139 69.8
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 2.9e-52 208.8 141 68.8
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 3.8e-52 208.4 115 80.0
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.1e-51 206.8 139 66.9
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.4e-51 206.5 136 70.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 2.4e-51 205.7 134 70.9
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.4e-51 205.7 137 67.2
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 4.1e-51 204.9 143 67.1
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 7.1e-51 204.1 144 66.7
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 7.1e-51 204.1 143 66.4
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.6e-50 203.0 143 66.4
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.1e-50 202.6 123 72.4
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.7e-50 202.2 117 73.5
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 4.6e-50 201.4 137 67.9
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 4.6e-50 201.4 135 70.4
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 4.6e-50 201.4 138 67.4
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 7.8e-50 200.7 136 69.1
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 7.8e-50 200.7 136 67.6
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 7.8e-50 200.7 144 64.6
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 7.8e-50 200.7 115 76.5
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.3e-49 199.9 144 65.3
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.7e-49 199.5 142 64.1
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 2.3e-49 199.1 138 68.8
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.0e-49 198.7 141 66.0
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.9e-49 198.4 134 67.2
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 5.1e-49 198.0 134 66.4
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 5.1e-49 198.0 138 65.9
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 6.6e-49 197.6 141 66.0
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 8.7e-49 197.2 141 65.2
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.1e-48 196.8 135 68.1
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 2.5e-48 195.7 115 74.8
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 3.3e-48 195.3 122 72.1
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 3.3e-48 195.3 135 67.4
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 5.6e-48 194.5 141 62.4
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 5.6e-48 194.5 133 66.2
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 7.3e-48 194.1 135 65.2
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 7.3e-48 194.1 115 71.3
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 7.3e-48 194.1 134 66.4
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 9.6e-48 193.7 142 62.0
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 9.6e-48 193.7 135 67.4
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.2e-47 193.4 135 66.7
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.6e-47 193.0 119 73.1
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.6e-47 193.0 142 61.3
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.8e-47 192.2 142 61.3
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 2.8e-47 192.2 136 62.5
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 3.6e-47 191.8 137 64.2
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.7e-47 191.4 133 66.9
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 6.2e-47 191.0 139 65.5
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 6.2e-47 191.0 124 67.7
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 6.2e-47 191.0 135 65.9
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.1e-46 190.3 135 64.4
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.4e-46 189.1 135 63.0
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.1e-46 188.7 122 65.6
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 5.2e-46 188.0 120 66.7
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 5.2e-46 188.0 134 64.9
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 5.2e-46 188.0 115 73.0
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 6.9e-46 187.6 133 65.4
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 9.0e-46 187.2 135 63.0
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 9.0e-46 187.2 122 64.8
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 4.4e-45 184.9 138 63.0
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 5.8e-45 184.5 125 62.4
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.7e-44 183.0 137 60.6
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.8e-44 181.8 134 61.2
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 6.4e-44 181.0 143 62.9
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.4e-43 179.9 165 54.5
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.9e-43 179.5 144 54.9
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.9e-43 179.5 144 54.9
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 5.4e-43 177.9 134 60.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 3.5e-42 175.3 109 70.6
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.6e-42 174.9 130 60.8
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 6.0e-42 174.5 131 61.1
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.1e-38 162.2 138 60.9
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 3.9e-33 145.2 119 60.5
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 8.7e-33 144.1 132 52.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 5.6e-32 141.4 81 76.5
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 5.6e-32 141.4 116 56.0
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 3.7e-31 138.7 81 74.1
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.6e-26 123.2 75 72.0
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 6.0e-26 121.3 114 45.6
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 6.7e-25 117.9 92 57.6
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.5e-24 116.7 92 56.5
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 4.3e-24 115.2 96 50.0
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 5.6e-24 114.8 135 45.9
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 3.7e-23 112.1 78 65.4
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 8.2e-23 110.9 89 51.7
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.5e-21 106.7 117 47.9
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 3.8e-20 102.1 93 44.1
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 8.4e-20 100.9 55 78.2
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.2e-18 97.1 134 41.8
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 4.6e-18 95.1 93 47.3
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-16 90.1 99 39.4
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.9e-16 89.7 92 45.7
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.0e-12 77.4 67 52.2
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 6.5e-12 74.7 56 58.9
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 3.0e-09 65.9 41 70.7
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 9.7e-08 60.8 70 42.9
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.7e-07 60.1 59 47.5
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 4.8e-07 58.5 53 56.6
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 8.2e-07 57.8 39 64.1
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 2.4e-06 56.2 88 39.8


User provided reference genes

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