Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 7.4e-200 700.3 343 100.0
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-196 689.5 343 98.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.8e-193 679.1 335 99.1
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 2.3e-193 678.7 343 97.4
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.0e-188 663.3 335 97.0
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.7e-188 662.5 335 97.0
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 2.5e-187 658.7 342 93.3
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-185 652.9 343 92.1
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.1e-182 643.3 344 91.3
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 3.1e-182 641.7 344 91.0
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 4.5e-181 637.9 344 89.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 5.0e-180 634.4 344 90.1
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.0e-177 626.7 343 89.5
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.0e-177 626.7 343 89.5
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 2.3e-177 625.5 343 89.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 3.0e-177 625.2 343 89.8
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 4.3e-171 604.7 343 87.8
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.3e-171 604.7 335 89.9
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-160 570.1 343 83.4
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.2e-158 562.0 322 87.3
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.0e-156 557.0 343 80.8
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.3e-156 555.8 351 79.8
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.0e-153 545.0 353 78.2
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.1e-142 510.4 344 73.5
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 5.1e-140 501.5 345 73.6
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 7.3e-139 497.7 352 71.3
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 6.2e-138 494.6 351 70.1
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.2e-136 490.3 347 70.9
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 2.6e-136 489.2 344 70.9
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.6e-136 489.2 342 72.2
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 3.4e-136 488.8 351 71.2
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 4.4e-136 488.4 344 70.9
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 9.9e-136 487.3 358 70.7
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 2.2e-135 486.1 357 70.9
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.9e-135 485.7 357 69.5
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.1e-134 483.8 344 71.5
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.1e-134 483.8 342 71.6
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.1e-134 483.8 357 70.6
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.4e-134 483.4 342 71.3
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.9e-134 483.0 354 68.6
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.4e-134 482.6 344 71.2
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.4e-134 482.6 344 71.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 3.2e-134 482.3 343 72.0
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.6e-133 479.9 345 70.7
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 3.5e-133 478.8 354 68.6
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 4.6e-133 478.4 349 69.3
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.0e-133 478.0 349 69.3
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 6.0e-133 478.0 360 68.9
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.3e-132 476.9 336 71.7
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.7e-132 476.5 345 70.7
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.0e-132 475.7 354 68.4
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 3.0e-132 475.7 355 69.9
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 5.1e-132 474.9 354 68.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-131 473.8 353 68.3
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-131 473.8 353 68.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.5e-131 472.6 350 68.3
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 2.5e-131 472.6 345 69.0
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.3e-131 472.2 352 68.2
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 4.3e-131 471.9 354 68.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 5.6e-131 471.5 354 68.4
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 7.3e-131 471.1 337 70.6
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-130 470.3 349 68.2
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.4e-129 466.8 355 66.2
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.1e-129 465.7 353 67.4
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 5.3e-129 464.9 344 69.5
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 6.9e-129 464.5 355 68.5
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.0e-128 463.0 340 70.0
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.6e-128 462.6 352 67.3
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.4e-128 462.2 353 65.7
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 4.5e-128 461.8 355 66.8
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 7.6e-128 461.1 349 67.0
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 9.9e-128 460.7 363 66.7
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.3e-127 460.3 351 67.5
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.3e-127 460.3 346 68.5
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.7e-127 459.9 346 67.6
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.2e-127 459.5 351 67.5
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 4.9e-127 458.4 351 66.7
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.4e-127 458.0 372 64.5
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.1e-126 457.2 353 67.1
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 2.4e-126 456.1 347 67.1
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 3.2e-126 455.7 351 67.0
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 9.3e-126 454.1 374 62.0
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-125 453.4 345 66.7
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.6e-125 453.4 372 64.8
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.6e-125 453.4 371 63.9
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.5e-125 452.2 352 65.6
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.5e-125 452.2 349 66.5
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.0e-124 450.7 352 66.2
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.3e-124 449.5 345 66.4
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.0e-124 449.1 359 64.6
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.3e-123 445.7 350 65.4
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.8e-122 442.6 347 65.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 9.0e-121 437.6 337 67.7
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.2e-120 437.2 376 61.7
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.5e-120 436.8 353 64.6
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.5e-120 436.8 366 63.9
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 3.4e-120 435.6 353 62.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 7.6e-120 434.5 354 64.1
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 7.6e-120 434.5 353 63.2
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 9.9e-120 434.1 353 62.6
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.3e-119 433.7 347 64.6
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.2e-119 433.0 343 63.8
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.5e-118 429.5 344 63.4
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.6e-117 426.8 366 62.0
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 4.6e-117 425.2 344 62.8
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.5e-115 420.2 349 63.9
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 3.7e-114 415.6 352 61.4
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.2e-114 414.8 375 58.1
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-113 413.7 344 63.1
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 5.3e-113 411.8 373 59.5
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 9.0e-113 411.0 346 63.9
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 4.5e-112 408.7 343 61.8
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 5.8e-112 408.3 323 64.1
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.9e-110 403.3 350 60.9
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 9.3e-110 401.0 324 65.1
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.9e-108 395.6 365 57.0
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 5.1e-108 395.2 329 63.8
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 8.7e-108 394.4 372 59.1
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 7.4e-107 391.3 365 56.2
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 2.2e-106 389.8 308 64.3
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 6.3e-106 388.3 354 59.0
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.4e-105 386.3 419 52.3
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 6.9e-105 384.8 525 45.3
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.3e-103 380.6 355 57.7
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.7e-103 380.2 343 58.3
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.2e-101 374.0 333 59.2
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 9.7e-99 364.4 365 54.2
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.6e-96 356.3 430 49.1
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.5e-94 349.7 326 58.0
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 6.1e-93 345.1 362 53.0
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.0e-92 344.4 412 48.8
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.6e-88 329.7 369 51.8
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 5.9e-88 328.6 163 92.0
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.9e-87 326.2 316 56.6
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 3.1e-81 306.2 342 50.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 1.3e-79 300.8 383 45.7
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.1e-77 293.5 365 46.0
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.8e-74 282.3 232 60.8
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 8.5e-71 271.6 237 61.6
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 8.5e-71 271.6 237 61.6
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 4.0e-68 262.7 225 66.7
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.8e-66 255.8 307 51.5
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.1e-65 253.1 361 42.9
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.5e-64 249.6 382 41.6
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.0e-60 236.5 213 62.9
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 5.2e-60 235.7 237 49.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.2e-59 234.6 347 42.4
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.1e-57 228.0 397 39.5
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 3.9e-55 219.5 189 61.4
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 8.6e-55 218.4 213 58.7
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 5.0e-47 192.6 173 62.4
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 4.3e-46 189.5 136 74.3
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 3.3e-38 163.3 133 57.1
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.2e-33 146.7 360 33.1
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 7.8e-32 142.1 71 85.9
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-31 141.4 338 32.8
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.0e-28 129.8 121 55.4
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.2e-27 128.3 104 59.6
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.0e-15 88.6 84 58.3
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.2e-13 79.3 63 63.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 5.1e-07 59.7 33 75.8


User provided reference genes

Program Settings