Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23041 Brassica carinata HOM05D004900 ORTHO05D006392 2.7e-135 485.3 248 100.0
BcaB07g31785 Brassica carinata HOM05D004900 ORTHO05D006392 1.0e-129 466.8 238 100.0
BraA09t36723Z Brassica rapa HOM05D004900 ORTHO05D006392 5.9e-122 441.0 238 95.8
BcaC04g23043 Brassica carinata HOM05D004900 ORTHO05D006392 1.7e-121 439.5 238 95.0
C09p12780 Brassica napus HOM05D004900 ORTHO05D006392 1.7e-121 439.5 238 95.0
BolC9t54165H Brassica oleracea HOM05D004900 ORTHO05D006392 1.7e-121 439.5 238 95.0
A09p10810 Brassica napus HOM05D004900 ORTHO05D006392 2.2e-121 439.1 238 94.5
Sp3g28890 Schrenkiella parvula HOM05D004900 ORTHO05D006392 2.0e-117 426.0 243 92.2
BcaC06g36073 Brassica carinata HOM05D004900 ORTHO05D006392 4.4e-117 424.9 244 91.4
A07p05130 Brassica napus HOM05D004900 ORTHO05D006392 3.7e-116 421.8 242 90.9
BraA07t28307Z Brassica rapa HOM05D004900 ORTHO05D006392 3.7e-116 421.8 242 90.9
Thhalv10022613m.g Eutrema salsugineum HOM05D004900 ORTHO05D006392 5.9e-114 414.5 243 89.3
C07p08190 Brassica napus HOM05D004900 ORTHO05D006392 1.3e-113 413.3 244 89.3
BolC7t41235H Brassica oleracea HOM05D004900 ORTHO05D006392 1.3e-113 413.3 244 89.3
Aa31LG8G13280 Aethionema arabicum HOM05D004900 ORTHO05D006392 2.2e-113 412.5 243 87.7
CARHR105960 Cardamine hirsuta HOM05D004900 ORTHO05D006392 1.5e-112 409.8 244 87.7
Carub.0003s2939 Capsella rubella HOM05D004900 ORTHO05D006392 5.5e-112 407.9 243 88.5
AT2G15620 Arabidopsis thaliana HOM05D004900 ORTHO05D006392 1.8e-110 402.9 241 88.8
AL3G47370 Arabidopsis lyrata HOM05D004900 ORTHO05D006392 5.2e-110 401.4 239 88.7
THA.LOC104807271 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 6.5e-105 384.4 240 80.8
THA.LOC104819578 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 6.5e-105 384.4 238 81.1
Potri.004G140800 Populus trichocarpa HOM05D004900 ORTHO05D006392 9.4e-104 380.6 241 81.7
COL.COLO4_32650 Corchorus olitorius HOM05D004900 ORTHO05D006392 3.0e-102 375.6 238 80.7
Gohir.D13G039300 Gossypium hirsutum HOM05D004900 ORTHO05D006392 2.8e-100 369.0 243 77.0
Gohir.A13G040600 Gossypium hirsutum HOM05D004900 ORTHO05D006392 4.8e-100 368.2 243 76.5
Gorai.013G044200 Gossypium raimondii HOM05D004900 ORTHO05D006392 4.8e-100 368.2 243 76.5
CANSAT25G2295 Cannabis sativa HOM05D004900 ORTHO05D006392 1.8e-99 366.3 238 78.6
CiPaw.06G172200 Carya illinoinensis HOM05D004900 ORTHO05D006392 1.8e-99 366.3 238 77.7
Glyma.07G212800 Glycine max HOM05D004900 ORTHO05D006392 1.8e-99 366.3 241 76.8
Sabra09G0077500 Salix brachista HOM05D004900 ORTHO05D006392 1.8e-99 366.3 236 79.2
Sabra04G0092700 Salix brachista HOM05D004900 ORTHO05D006392 2.4e-99 365.9 241 78.8
Lj4g0002152 Lotus japonicus HOM05D004900 ORTHO05D006392 4.1e-99 365.2 236 77.1
Ciclev10028067m.g Citrus clementina HOM05D004900 ORTHO05D006392 7.0e-99 364.4 248 75.4
Nitab4.5_0018347g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 7.0e-99 364.4 210 85.2
Eucgr.I01148 Eucalyptus grandis HOM05D004900 ORTHO05D006392 9.1e-99 364.0 242 77.7
Migut.B00351 Erythranthe guttata HOM05D004900 ORTHO05D006392 1.2e-98 363.6 244 77.9
TWI31G0729 Tripterygium wilfordii HOM05D004900 ORTHO05D006392 1.2e-98 363.6 237 79.3
Manes.10G071700 Manihot esculenta HOM05D004900 ORTHO05D006392 2.0e-98 362.8 243 77.0
Nitab4.5_0005249g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 2.0e-98 362.8 210 84.8
VMungo0251G0630 Vigna mungo HOM05D004900 ORTHO05D006392 2.0e-98 362.8 235 77.4
Cpa.g.sc62.8 Carica papaya HOM05D004900 ORTHO05D006392 2.7e-98 362.5 239 76.6
Oeu009747.1 Olea europaea HOM05D004900 ORTHO05D006392 4.5e-98 361.7 240 75.8
Thecc.02G101200 Theobroma cacao HOM05D004900 ORTHO05D006392 5.9e-98 361.3 237 77.6
PGSC0003DMG400025823 Solanum tuberosum HOM05D004900 ORTHO05D006392 1.0e-97 360.5 230 79.6
TPR.G25435 Trifolium pratense HOM05D004900 ORTHO05D006392 1.0e-97 360.5 240 76.7
ClCG05G009960 Citrullus lanatus HOM05D004900 ORTHO05D006392 1.3e-97 360.1 236 76.7
Phvul.003G292100 Phaseolus vulgaris HOM05D004900 ORTHO05D006392 1.3e-97 360.1 235 77.4
Solyc01g108630.3 Solanum lycopersicum HOM05D004900 ORTHO05D006392 1.7e-97 359.8 230 79.6
Sopen01g050850 Solanum pennellii HOM05D004900 ORTHO05D006392 1.7e-97 359.8 230 80.0
Duzib248G0136 Durio zibethinus HOM05D004900 ORTHO05D006392 3.8e-97 358.6 239 77.4
Glyma.02G132100 Glycine max HOM05D004900 ORTHO05D006392 5.0e-97 358.2 248 74.6
Medtr4g086020 Medicago truncatula HOM05D004900 ORTHO05D006392 8.6e-97 357.5 239 75.3
MSTRG.16738 Avicennia marina HOM05D004900 ORTHO05D006392 2.5e-96 355.9 243 75.7
SGA_v2.0_scaffold90G27642 Striga asiatica HOM05D004900 ORTHO05D006392 3.3e-96 355.5 242 74.0
CAN.G1041.10 Capsicum annuum HOM05D004900 ORTHO05D006392 4.2e-96 355.1 203 84.7
CSS0038145 Camellia sinensis var. sinensis HOM05D004900 ORTHO05D006392 5.5e-96 354.8 230 77.0
MELO3C019505.2 Cucumis melo HOM05D004900 ORTHO05D006392 5.5e-96 354.8 238 76.1
Ca_18688_v3 Cicer arietinum L. HOM05D004900 ORTHO05D006392 9.5e-96 354.0 239 74.5
Lalb_Chr05g0219191 Lupinus albus HOM05D004900 ORTHO05D006392 9.5e-96 354.0 238 75.6
Atru.chr5.2694 Acer truncatum HOM05D004900 ORTHO05D006392 1.2e-95 353.6 241 74.7
Cc02_g28520 Coffea canephora HOM05D004900 ORTHO05D006392 1.2e-95 353.6 242 74.4
Prupe.8G126000 Prunus persica HOM05D004900 ORTHO05D006392 1.2e-95 353.6 241 76.8
Dinv42160 Davidia involucrata HOM05D004900 ORTHO05D006392 1.6e-95 353.2 237 76.4
CAN.G663.4 Capsicum annuum HOM05D004900 ORTHO05D006392 2.1e-95 352.8 238 76.5
Nitab4.5_0000876g0100 Nicotiana tabacum HOM05D004900 ORTHO05D006392 2.1e-95 352.8 237 74.3
Psat7g123960 Pisum sativum HOM05D004900 ORTHO05D006392 2.1e-95 352.8 237 74.7
Cfa004525 Carpinus fangiana HOM05D004900 ORTHO05D006392 2.8e-95 352.4 238 77.3
CsaV3_3G018610 Cucumis sativus L. HOM05D004900 ORTHO05D006392 4.7e-95 351.7 238 75.2
PGR142G1087 Punica granatum HOM05D004900 ORTHO05D006392 4.7e-95 351.7 238 74.4
arahy.Tifrunner.gnm1.ann1.AXQD4Y Arachis hypogaea HOM05D004900 ORTHO05D006392 8.0e-95 350.9 237 75.5
Hma1.2p1_0370F.1_g137745 Hydrangea macrophylla HOM05D004900 ORTHO05D006392 1.0e-94 350.5 239 75.3
arahy.Tifrunner.gnm1.ann1.X7K798 Arachis hypogaea HOM05D004900 ORTHO05D006392 1.4e-94 350.1 237 75.5
Sed0000080 Sechium edule HOM05D004900 ORTHO05D006392 1.4e-94 350.1 239 76.6
AUR62029383 Chenopodium quinoa HOM05D004900 ORTHO05D006392 3.0e-94 349.0 209 80.9
AUR62034289 Chenopodium quinoa HOM05D004900 ORTHO05D006392 3.0e-94 349.0 209 80.9
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 3.0e-94 349.0 196 85.7
DCAR_029058 Daucus carota HOM05D004900 ORTHO05D006392 5.2e-94 348.2 243 74.9
Peaxi162Scf00003g01630 Petunia axillaris HOM05D004900 ORTHO05D006392 6.8e-94 347.8 240 73.8
PGSC0003DMG400008262 Solanum tuberosum HOM05D004900 ORTHO05D006392 8.9e-94 347.4 236 73.7
MD05G1081500 Malus domestica HOM05D004900 ORTHO05D006392 2.0e-93 346.3 241 76.8
Rhsim11G0165400 Rhododendron simsii HOM05D004900 ORTHO05D006392 2.0e-93 346.3 242 71.9
Lj5A209T83 Lonicera japonica HOM05D004900 ORTHO05D006392 4.4e-93 345.1 239 74.9
Sopen10g022530 Solanum pennellii HOM05D004900 ORTHO05D006392 4.4e-93 345.1 236 73.3
vmacro02045 Vaccinium macrocarpon HOM05D004900 ORTHO05D006392 4.4e-93 345.1 239 74.1
FvH4_2g05960 Fragaria vesca HOM05D004900 ORTHO05D006392 5.7e-93 344.7 232 75.4
HanXRQChr04g0128191 Helianthus annuus HOM05D004900 ORTHO05D006392 5.7e-93 344.7 228 77.6
unitig_0.g85 Utricularia gibba HOM05D004900 ORTHO05D006392 2.8e-92 342.4 205 82.4
EL10Ac4g08164 Beta vulgaris HOM05D004900 ORTHO05D006392 4.9e-92 341.7 201 81.1
FAN24G3555 Fragaria x ananassa HOM05D004900 ORTHO05D006392 4.9e-92 341.7 232 75.0
RcHm_v2.0_Chr6g0257431 Rosa chinensis HOM05D004900 ORTHO05D006392 4.9e-92 341.7 239 74.5
FAN27G2168 Fragaria x ananassa HOM05D004900 ORTHO05D006392 8.3e-92 340.9 232 74.6
CAN.G149.20 Capsicum annuum HOM05D004900 ORTHO05D006392 1.4e-91 340.1 198 83.3
Hund22922 Selenicereus undatus HOM05D004900 ORTHO05D006392 3.1e-91 339.0 206 80.1
Sc18g0004090 Simmondsia chinensis HOM05D004900 ORTHO05D006392 4.1e-91 338.6 245 72.2
Solyc10g050890.2 Solanum lycopersicum HOM05D004900 ORTHO05D006392 4.1e-91 338.6 236 72.5
Ah.04g164910 Amaranthus hybridus HOM05D004900 ORTHO05D006392 9.2e-91 337.4 230 72.6
HanXRQChr09g0259251 Helianthus annuus HOM05D004900 ORTHO05D006392 3.5e-90 335.5 233 71.7
TAR628G1452 Trochodendron aralioides HOM05D004900 ORTHO05D006392 1.0e-89 334.0 227 75.3
PSO210G5341 Papaver somniferum HOM05D004900 ORTHO05D006392 2.9e-89 332.4 244 70.5
ATR0009G021 Amborella trichopoda HOM05D004900 ORTHO05D006392 3.8e-89 332.0 235 70.2
Os01g0357100 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 3.8e-89 332.0 252 69.8
Nn1g04853 Nelumbo nucifera HOM05D004900 ORTHO05D006392 6.6e-89 331.3 245 69.4
Hund02212 Selenicereus undatus HOM05D004900 ORTHO05D006392 6.6e-89 331.3 244 70.1
QL11p035712 Quercus lobata HOM05D004900 ORTHO05D006392 1.1e-88 330.5 234 73.1
PSO170G4054 Papaver somniferum HOM05D004900 ORTHO05D006392 7.3e-88 327.8 244 70.1
Zm00001eb193660 Zea mays HOM05D004900 ORTHO05D006392 1.2e-87 327.0 250 66.4
SEGI_39412 Sequoiadendron giganteum HOM05D004900 ORTHO05D006392 8.0e-87 324.3 209 73.7
SMO200G0071 Selaginella moellendorffii HOM05D004900 ORTHO05D006392 1.5e-85 320.1 229 69.4
Zm00001eb255880 Zea mays HOM05D004900 ORTHO05D006392 2.6e-85 319.3 245 66.5
HPP92_004227 Vanilla planifolia HOM05D004900 ORTHO05D006392 4.1e-83 312.0 203 71.4
HPP92_004223 Vanilla planifolia HOM05D004900 ORTHO05D006392 3.5e-82 308.9 203 70.9
Aqoxy6G01317 Aquilegia oxysepala HOM05D004900 ORTHO05D006392 7.8e-82 307.8 234 68.4
Pp3c27_6610 Physcomitrium patens HOM05D004900 ORTHO05D006392 7.8e-82 307.8 210 70.0
CDE09G0425 Ceratophyllum demersum HOM05D004900 ORTHO05D006392 2.8e-79 299.3 208 69.2
Peaxi162Scf00016g01734 Petunia axillaris HOM05D004900 ORTHO05D006392 1.4e-78 297.0 237 67.1
Pp3c16_15880 Physcomitrium patens HOM05D004900 ORTHO05D006392 3.1e-78 295.8 209 67.5
Actinidia00438 Actinidia chinensis HOM05D004900 ORTHO05D006392 1.2e-77 293.9 159 89.9
MBI03_g13466_MAGBIO Magnolia biondii HOM05D004900 ORTHO05D006392 9.8e-77 290.8 231 67.5
AagrBONN_evm.TU.Sc2ySwM_117.307 Anthoceros agrestis HOM05D004900 ORTHO05D006392 6.4e-76 288.1 215 65.1
Potri.009G101600 Populus trichocarpa HOM05D004900 ORTHO05D006392 6.4e-76 288.1 222 67.6
AagrBONN_evm.TU.Sc2ySwM_117.432 Anthoceros agrestis HOM05D004900 ORTHO05D006392 2.4e-75 286.2 209 67.5
Lsat_1_v5_gn_7_86981 Lactuca sativa HOM05D004900 ORTHO05D006392 4.1e-75 285.4 160 86.9
Haze_10084 Corylus avellana HOM05D004900 ORTHO05D006392 5.4e-75 285.0 238 65.1
Mapoly0183s0004 Marchantia polymorpha HOM05D004900 ORTHO05D006392 6.0e-74 281.6 237 62.0
CBR_g49893 Chara braunii HOM05D004900 ORTHO05D006392 3.9e-73 278.9 206 66.5
Os02g0765900 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 1.1e-72 277.3 170 80.0
GSVIVG01031737001 Vitis vinifera HOM05D004900 ORTHO05D006392 3.4e-69 265.8 144 87.5
Ah.06g184040 Amaranthus hybridus HOM05D004900 ORTHO05D006392 4.1e-67 258.8 209 63.6
CiPaw.05G006800 Carya illinoinensis HOM05D004900 ORTHO05D006392 1.9e-59 233.4 243 56.8
MCO01G555 Micromonas commoda HOM05D004900 ORTHO05D006392 1.2e-53 214.2 193 51.3
Cre09.g410750 Chlamydomonas reinhardtii HOM05D004900 ORTHO05D006392 2.3e-41 173.3 179 52.0
Nitab4.5_0001401g0020 Nicotiana tabacum HOM05D004900 ORTHO05D006392 5.6e-40 168.7 97 81.4
PRCOL_00004550 Prasinoderma coloniale HOM05D004900 ORTHO05D006392 2.2e-36 156.8 185 46.5
PRCOL_00002965 Prasinoderma coloniale HOM05D004900 ORTHO05D001484 2.9e-36 156.4 185 46.5
TAR628G1596 Trochodendron aralioides HOM05D004900 ORTHO05D006392 5.1e-25 119.0 120 55.0
BolC3t18246H Brassica oleracea HOM05D004900 ORTHO05D027847 3.4e-21 106.3 89 66.3
Actinidia12947 Actinidia chinensis HOM05D004900 ORTHO05D030937 2.5e-19 100.1 69 73.9
BcaB03g16309 Brassica carinata HOM05D004900 ORTHO05D006392 3.3e-16 89.7 42 97.6
C03p59820 Brassica napus HOM05D004900 ORTHO05D027847 1.1e-14 84.7 78 61.5
A10p07890 Brassica napus HOM05D004900 ORTHO05D027847 1.3e-12 77.8 61 68.9
BraSC35t46009Z Brassica rapa HOM05D004900 ORTHO05D027847 1.3e-12 77.8 61 68.9
VMungo0647G1691 Vigna mungo HOM05D004900 ORTHO05D030937 7.2e-11 72.0 43 79.1


User provided reference genes

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