Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23040 Brassica carinata HOM05D001286 ORTHO05D000440 6.8e-101 370.5 173 100.0
C09p12800 Brassica napus HOM05D001286 ORTHO05D000440 1.7e-91 339.3 169 92.9
BolC9t54170H Brassica oleracea HOM05D001286 ORTHO05D000440 1.7e-91 339.3 169 92.9
BraA09t36726Z Brassica rapa HOM05D001286 ORTHO05D000440 1.1e-90 336.7 168 92.9
Sp6g05700 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.9e-55 219.5 169 65.1
Sp6g05210 Schrenkiella parvula HOM05D001286 ORTHO05D000440 3.4e-52 208.8 172 57.6
Sp4g03050 Schrenkiella parvula HOM05D001286 ORTHO05D000440 7.6e-52 207.6 170 60.0
AT4G00893 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 7.9e-49 197.6 176 56.8
CARHR253850 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.3e-48 196.1 170 54.1
BraA03t12138Z Brassica rapa HOM05D001286 ORTHO05D000440 3.9e-48 195.3 167 59.9
A09p10860 Brassica napus HOM05D001286 ORTHO05D000440 8.7e-48 194.1 101 92.1
A03p29450 Brassica napus HOM05D000315 ORTHO05D000440 4.3e-47 191.8 167 59.3
BcaB05g23813 Brassica carinata HOM05D001286 ORTHO05D000440 1.0e-43 180.6 171 56.1
AL6G47240 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 6.5e-43 177.9 169 53.8
A03p29440 Brassica napus HOM05D001286 ORTHO05D000440 1.8e-40 169.9 169 53.8
Carub.0006s3152 Capsella rubella HOM05D001286 ORTHO05D000440 1.8e-40 169.9 171 50.9
BcaC01g04623 Brassica carinata HOM05D001286 ORTHO05D000440 3.0e-40 169.1 169 54.4
C03p35590 Brassica napus HOM05D001286 ORTHO05D000440 3.0e-40 169.1 169 54.4
BolC3t15873H Brassica oleracea HOM05D001286 ORTHO05D000440 3.0e-40 169.1 169 54.4
BcaB01g02679 Brassica carinata HOM05D001286 ORTHO05D000440 1.5e-39 166.8 168 52.4
BraA03t12137Z Brassica rapa HOM05D001286 ORTHO05D000440 4.3e-39 165.2 169 52.7
CARHR253860 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.9e-37 157.9 165 50.9
BraA02t07603Z Brassica rapa HOM05D001286 ORTHO05D027858 2.2e-35 152.9 151 52.3
CARHR216300 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.9e-35 152.5 165 52.7
A09p26950 Brassica napus HOM05D001286 ORTHO05D000440 6.5e-35 151.4 178 42.1
BraA09t38265Z Brassica rapa HOM05D001286 ORTHO05D000440 6.5e-35 151.4 178 42.1
AT4G12370 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 7.2e-34 147.9 178 42.1
CARHR253820 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.7e-33 146.0 147 49.7
BcaB01g02678 Brassica carinata HOM05D001286 ORTHO05D000440 3.0e-32 142.5 167 48.5
AL6G47230 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.3e-30 137.1 178 41.0
A02p25680 Brassica napus HOM05D001286 ORTHO05D000440 8.2e-30 134.4 177 39.5
BraA02t07559Z Brassica rapa HOM05D001286 ORTHO05D000440 2.4e-29 132.9 177 39.0
CARHR253870 Cardamine hirsuta HOM05D001286 ORTHO05D000440 3.1e-29 132.5 178 39.9
A02p26050 Brassica napus HOM05D001286 ORTHO05D000440 2.6e-28 129.4 131 51.9
Sp6g05220 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.7e-27 126.7 176 38.6
Carub.0006s3151 Capsella rubella HOM05D001286 ORTHO05D000440 2.7e-25 119.4 161 41.0
BcaB05g23747 Brassica carinata HOM05D001286 ORTHO05D000440 1.0e-24 117.5 168 39.3
AL6G44750 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.8e-24 116.7 180 41.1
AT4G10660 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 3.0e-24 115.9 170 41.8
Thhalv10029362m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 6.7e-24 114.8 164 40.9
AT4G10700 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.1e-23 114.0 147 42.2
CARHR253830 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.1e-23 114.0 180 38.9
Sp6g05180 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.3e-22 110.5 165 40.6
BcaC01g04597 Brassica carinata HOM05D001286 ORTHO05D000440 5.3e-21 105.1 168 40.5
A03p29650 Brassica napus HOM05D001286 ORTHO05D000440 5.3e-21 105.1 168 40.5
BraA03t12159Z Brassica rapa HOM05D001286 ORTHO05D000440 5.3e-21 105.1 168 40.5
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 5.3e-21 105.1 115 43.5
BcaB01g01734 Brassica carinata HOM05D001286 ORTHO05D000440 9.1e-21 104.4 182 35.7
BcaC01g04596 Brassica carinata HOM05D001286 ORTHO05D000440 9.1e-21 104.4 168 39.9
C03p35920 Brassica napus HOM05D001286 ORTHO05D000440 2.0e-20 103.2 168 39.9
BolC3t15900H Brassica oleracea HOM05D001286 ORTHO05D000440 2.0e-20 103.2 168 39.9
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 2.6e-20 102.8 158 37.3
Sabra16G0085000 Salix brachista HOM05D001286 ORTHO05D000440 2.6e-20 102.8 161 36.6
Sabra16G0087200 Salix brachista HOM05D001286 ORTHO05D000440 2.6e-20 102.8 161 36.6
BcaB01g02651 Brassica carinata HOM05D001286 ORTHO05D000440 4.5e-20 102.1 168 39.9
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 4.5e-20 102.1 115 43.5
Manes.09G054600 Manihot esculenta HOM05D001286 ORTHO05D000440 4.5e-20 102.1 118 42.4
A03p29660 Brassica napus HOM05D001286 ORTHO05D000440 5.9e-20 101.7 168 39.9
BraA03t12160Z Brassica rapa HOM05D001286 ORTHO05D000440 5.9e-20 101.7 168 39.9
Cpa.g.sc5.10 Carica papaya HOM05D001286 ORTHO05D000440 7.7e-20 101.3 171 35.7
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 7.7e-20 101.3 115 43.5
BcaB01g02647 Brassica carinata HOM05D001286 ORTHO05D000440 1.0e-19 100.9 155 41.3
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 1.0e-19 100.9 156 38.5
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 1.0e-19 100.9 115 42.6
Lj3P997T36 Lonicera japonica HOM05D001286 ORTHO05D000440 1.3e-19 100.5 114 43.0
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 1.3e-19 100.5 158 36.7
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.7e-19 100.1 115 42.6
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 1.7e-19 100.1 156 37.8
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 1.7e-19 100.1 114 44.7
C02p40810 Brassica napus HOM05D001286 ORTHO05D000440 2.9e-19 99.4 95 45.3
Oeu025671.3 Olea europaea HOM05D001286 ORTHO05D000440 2.9e-19 99.4 156 37.8
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 3.8e-19 99.0 115 41.7
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 3.8e-19 99.0 115 43.5
BcaC03g16285 Brassica carinata HOM05D001286 ORTHO05D000440 5.0e-19 98.6 95 45.3
BolC2t10098H Brassica oleracea HOM05D001286 ORTHO05D000440 5.0e-19 98.6 95 45.3
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 6.5e-19 98.2 160 36.2
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 6.5e-19 98.2 156 35.3
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 6.5e-19 98.2 161 35.4
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 8.5e-19 97.8 114 43.0
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 8.5e-19 97.8 115 41.7
FAN14G2386 Fragaria x ananassa HOM05D001286 ORTHO05D000440 8.5e-19 97.8 119 39.5
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 8.5e-19 97.8 167 35.3
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 8.5e-19 97.8 158 38.0
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 8.5e-19 97.8 158 36.1
FvH4_6g18890 Fragaria vesca HOM05D001286 ORTHO05D000440 1.1e-18 97.4 119 38.7
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 1.1e-18 97.4 156 37.2
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 1.5e-18 97.1 156 36.5
FAN02G2895 Fragaria x ananassa HOM05D001286 ORTHO05D000440 3.2e-18 95.9 119 38.7
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 3.2e-18 95.9 156 36.5
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 4.2e-18 95.5 160 35.0
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 4.2e-18 95.5 156 37.2
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 5.5e-18 95.1 116 41.4
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 5.5e-18 95.1 116 41.4
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 5.5e-18 95.1 167 34.1
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 5.5e-18 95.1 118 39.0
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 7.2e-18 94.7 118 40.7
FAN05G3626 Fragaria x ananassa HOM05D001286 ORTHO05D000440 7.2e-18 94.7 119 37.8
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 7.2e-18 94.7 160 35.6
unitig_744.g24700 Utricularia gibba HOM05D001286 ORTHO05D000440 7.2e-18 94.7 115 40.9
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 9.4e-18 94.4 156 36.5
Sp6g05200 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.4e-18 94.4 155 37.4
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 1.2e-17 94.0 115 39.1
MD12G1025100 Malus domestica HOM05D001286 ORTHO05D000440 1.2e-17 94.0 156 35.3
Oeu047860.1 Olea europaea HOM05D001286 ORTHO05D000440 1.2e-17 94.0 164 35.4
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 1.6e-17 93.6 115 40.0
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 2.1e-17 93.2 115 38.3
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 2.7e-17 92.8 113 40.7
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 2.7e-17 92.8 156 34.0
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 3.6e-17 92.4 158 34.8
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 3.6e-17 92.4 114 40.4
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 3.6e-17 92.4 114 40.4
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 3.6e-17 92.4 114 40.4
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 3.6e-17 92.4 156 34.6
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 4.7e-17 92.0 114 39.5
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 4.7e-17 92.0 155 34.8
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 6.1e-17 91.7 114 39.5
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 6.1e-17 91.7 165 34.5
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 8.0e-17 91.3 114 39.5
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 8.0e-17 91.3 115 37.4
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.4e-16 90.5 155 35.5
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 1.8e-16 90.1 165 34.5
MSTRG.19268 Avicennia marina HOM05D001286 ORTHO05D000440 2.3e-16 89.7 156 35.3
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 2.3e-16 89.7 160 33.1
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 3.0e-16 89.4 156 34.0
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 3.0e-16 89.4 168 35.1
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 4.0e-16 89.0 156 33.3
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 4.0e-16 89.0 156 33.3
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 5.2e-16 88.6 156 34.0
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 8.8e-16 87.8 114 38.6
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 8.8e-16 87.8 114 38.6
RcHm_v2.0_Chr3g0473881 Rosa chinensis HOM05D001286 ORTHO05D000440 1.2e-15 87.4 114 38.6
Glyma.19G194964 Glycine max HOM05D001286 ORTHO05D000440 2.6e-15 86.3 114 37.7
Ca_09011_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 7.5e-15 84.7 114 35.1
Glyma.03G196600 Glycine max HOM05D001286 ORTHO05D000440 7.5e-15 84.7 114 37.7
MSTRG.26636 Avicennia marina HOM05D001286 ORTHO05D000440 2.2e-14 83.2 115 37.4
A02p26090 Brassica napus HOM05D001286 ORTHO05D027858 4.8e-14 82.0 67 56.7
Thhalv10029151m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 4.8e-14 82.0 155 34.8
Lalb_Chr01g0018111 Lupinus albus HOM05D001286 ORTHO05D000440 6.3e-14 81.6 167 34.1
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 6.3e-14 81.6 118 36.4
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 4.1e-13 79.0 118 35.6
SalBow5G5642 Salvia bowleyana HOM05D001286 ORTHO05D000440 1.2e-12 77.4 123 33.3
BcaC09g49525 Brassica carinata HOM05D001286 ORTHO05D000440 3.5e-12 75.9 160 32.5
SalBow5G2315 Salvia bowleyana HOM05D001286 ORTHO05D000440 3.5e-12 75.9 123 32.5
C01p35560 Brassica napus HOM05D001286 ORTHO05D000440 1.7e-11 73.6 160 31.9
BolC1t03516H Brassica oleracea HOM05D001286 ORTHO05D000440 1.7e-11 73.6 160 31.9
Thhalv10023551m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 3.8e-11 72.4 159 31.4
Psat3g032440 Pisum sativum HOM05D001286 ORTHO05D000440 6.5e-11 71.6 116 34.5
A01p28080 Brassica napus HOM05D001286 ORTHO05D000440 1.1e-10 70.9 160 31.9
BraA01t02936Z Brassica rapa HOM05D001286 ORTHO05D000440 1.1e-10 70.9 160 31.9
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 4.2e-10 68.9 166 28.3
Medtr7g104785 Medicago truncatula HOM05D001286 ORTHO05D000440 4.2e-10 68.9 118 31.4
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 1.6e-09 67.0 118 31.4
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 8.0e-09 64.7 158 27.8
C02p41540 Brassica napus HOM05D001286 ORTHO05D027858 4.0e-08 62.4 50 56.0
BolC2t10171H Brassica oleracea HOM05D001286 ORTHO05D027858 4.0e-08 62.4 50 56.0
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 4.4e-07 58.9 118 33.1
Sp2g05780 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.8e-07 57.8 169 27.2
Carub.0005s2324 Capsella rubella HOM05D001286 ORTHO05D000440 8.3e-06 54.7 159 29.6


User provided reference genes

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