Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 4.7e-32 140.6 71 100.0
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.8e-31 138.7 71 98.6
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.8e-31 138.7 71 98.6
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-25 119.4 78 82.1
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 2.0e-22 108.6 84 71.4
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 2.0e-22 108.6 84 71.4
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 2.2e-21 105.1 84 70.2
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 2.2e-21 105.1 84 70.2
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 2.2e-21 105.1 87 72.4
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 3.7e-21 104.4 84 71.4
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 2.4e-20 101.7 87 69.0
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 9.2e-20 99.8 82 69.5
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 1.6e-19 99.0 84 67.9
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.6e-19 99.0 72 70.8
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 1.6e-19 99.0 84 67.9
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 1.6e-19 99.0 84 67.9
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 1.6e-19 99.0 87 67.8
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 6.0e-19 97.1 71 70.4
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 6.0e-19 97.1 71 70.4
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 7.8e-19 96.7 87 64.4
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 7.3e-17 90.1 88 63.6
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 7.3e-17 90.1 87 64.4
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.0e-14 82.0 87 56.3
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 4.9e-13 77.4 86 52.3
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 4.1e-12 74.3 86 50.0
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 4.1e-12 74.3 86 51.2
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 6.0e-11 70.5 66 62.1
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 6.0e-11 70.5 86 48.8
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 6.0e-11 70.5 86 48.8
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 1.0e-10 69.7 89 48.3
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 1.3e-10 69.3 87 50.6
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.3e-10 69.3 86 47.7
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.3e-10 69.3 86 47.7
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 1.7e-10 68.9 86 46.5
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.7e-10 68.9 87 51.7
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 2.3e-10 68.6 63 55.6
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 3.0e-10 68.2 87 49.4
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 3.9e-10 67.8 60 55.0
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 3.9e-10 67.8 85 48.2
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 5.1e-10 67.4 87 48.3
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 5.1e-10 67.4 90 51.1
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 6.6e-10 67.0 86 48.8
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.1e-09 66.2 87 48.3
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.5e-09 65.9 87 43.7
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.5e-09 65.9 84 48.8
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.5e-09 65.9 87 46.0
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.5e-09 65.9 88 45.5
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 1.9e-09 65.5 87 51.7
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 3.3e-09 64.7 43 67.4
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 3.3e-09 64.7 46 65.2
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 3.3e-09 64.7 87 49.4
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 3.3e-09 64.7 87 50.6
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 3.3e-09 64.7 86 45.3
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 4.3e-09 64.3 69 49.3
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 4.3e-09 64.3 87 48.3
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 5.6e-09 63.9 86 45.3
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 5.6e-09 63.9 87 42.5
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.6e-09 63.9 86 47.7
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 5.6e-09 63.9 87 50.6
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 9.5e-09 63.2 87 48.3
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 9.5e-09 63.2 87 49.4
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 1.2e-08 62.8 87 41.4
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 1.2e-08 62.8 87 42.5
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.2e-08 62.8 86 46.5
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 1.2e-08 62.8 86 46.5
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 1.2e-08 62.8 87 43.7
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 1.6e-08 62.4 42 69.0
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.1e-08 62.0 80 42.5
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 2.1e-08 62.0 86 45.3
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 2.8e-08 61.6 89 44.9
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 2.8e-08 61.6 89 44.9
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 2.8e-08 61.6 45 64.4
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.8e-08 61.6 46 60.9
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.8e-08 61.6 86 48.8
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 2.8e-08 61.6 42 69.0
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.8e-08 61.6 42 64.3
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 4.7e-08 60.8 46 60.9
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 4.7e-08 60.8 42 61.9
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 4.7e-08 60.8 87 42.5
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 4.7e-08 60.8 43 62.8
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 6.2e-08 60.5 84 41.7
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 6.2e-08 60.5 56 55.4
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 8.1e-08 60.1 86 45.3
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 8.1e-08 60.1 46 58.7
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.1e-07 59.7 42 69.0
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.1e-07 59.7 55 56.4
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 1.1e-07 59.7 43 60.5
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 1.1e-07 59.7 42 66.7
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 1.1e-07 59.7 87 41.4
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.4e-07 59.3 87 40.2
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 1.4e-07 59.3 46 58.7
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.4e-07 59.3 91 40.7
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 1.8e-07 58.9 78 48.7
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 1.8e-07 58.9 46 58.7
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.8e-07 58.9 87 40.2
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 1.8e-07 58.9 42 64.3
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.8e-07 58.9 86 41.9
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 2.4e-07 58.5 42 64.3
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 3.1e-07 58.2 43 58.1
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 3.1e-07 58.2 84 44.0
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 3.1e-07 58.2 86 41.9
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 3.1e-07 58.2 46 56.5
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 4.0e-07 57.8 86 44.2
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 4.0e-07 57.8 42 61.9
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 5.2e-07 57.4 65 46.2
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 5.2e-07 57.4 80 46.2
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 5.2e-07 57.4 86 38.4
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 5.2e-07 57.4 76 51.3
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 6.8e-07 57.0 46 56.5
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 6.8e-07 57.0 41 63.4
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 6.8e-07 57.0 72 43.1
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 8.9e-07 56.6 87 37.9
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 1.2e-06 56.2 87 39.1
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 1.5e-06 55.8 71 42.3
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 2.0e-06 55.5 42 61.9
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.0e-06 55.5 86 40.7
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 2.0e-06 55.5 71 42.3
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.6e-06 55.1 76 46.1
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 2.6e-06 55.1 84 39.3
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 5.8e-06 53.9 40 67.5


User provided reference genes

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