Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 3.8e-70 268.1 138 100.0
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 3.8e-70 268.1 138 100.0
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 4.2e-69 264.6 138 99.3
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 7.9e-68 260.4 138 95.7
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 7.9e-68 260.4 138 95.7
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 4.3e-66 254.6 138 93.5
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 5.9e-63 244.2 138 88.4
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 2.5e-61 238.8 138 86.2
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 4.2e-61 238.0 138 86.2
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 9.4e-61 236.9 138 85.5
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 1.3e-57 226.5 138 82.6
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 4.2e-53 211.5 138 75.4
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 2.0e-50 202.6 139 78.4
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 4.1e-48 194.9 119 88.2
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 2.0e-47 192.6 119 87.4
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 3.5e-47 191.8 119 86.6
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 3.5e-47 191.8 119 86.6
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 4.5e-47 191.4 119 86.6
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 1.9e-45 186.0 138 65.9
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 7.0e-24 114.4 137 44.5
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 3.5e-23 112.1 137 46.0
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.9e-22 109.0 139 43.9
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 2.9e-22 109.0 137 42.3
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 3.9e-22 108.6 139 46.0
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 5.0e-22 108.2 137 43.8
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 5.0e-22 108.2 137 40.9
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 8.6e-22 107.5 142 43.0
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 8.6e-22 107.5 137 43.1
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 1.1e-21 107.1 134 44.0
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.1e-21 107.1 137 43.1
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.9e-21 106.3 137 42.3
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 5.6e-21 104.8 138 44.9
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 1.2e-20 103.6 138 43.5
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 1.2e-20 103.6 139 48.2
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.2e-20 103.6 127 47.2
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 1.6e-20 103.2 130 45.4
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 1.6e-20 103.2 139 44.6
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 2.8e-20 102.4 139 42.4
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 4.7e-20 101.7 137 39.4
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 6.1e-20 101.3 138 40.6
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.0e-19 100.5 137 40.9
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.0e-19 100.5 138 41.3
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.8e-19 99.8 138 43.5
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 2.3e-19 99.4 133 39.8
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 3.1e-19 99.0 145 37.2
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 3.1e-19 99.0 134 38.1
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 3.1e-19 99.0 139 40.3
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 3.1e-19 99.0 134 44.0
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 5.2e-19 98.2 140 41.4
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 6.8e-19 97.8 140 40.7
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 8.9e-19 97.4 136 44.9
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.5e-18 96.7 137 38.7
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 1.5e-18 96.7 137 43.8
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 4.4e-18 95.1 139 40.3
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 4.4e-18 95.1 136 42.6
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 4.4e-18 95.1 138 40.6
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 4.4e-18 95.1 135 43.7
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 4.4e-18 95.1 137 39.4
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 4.4e-18 95.1 149 38.3
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 5.8e-18 94.7 137 40.9
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 5.8e-18 94.7 139 40.3
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 7.5e-18 94.4 135 37.0
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 9.8e-18 94.0 134 42.5
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.3e-17 93.6 138 39.9
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 2.9e-17 92.4 122 44.3
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 2.9e-17 92.4 143 39.2
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.7e-17 92.0 138 39.1
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 3.7e-17 92.0 138 39.1
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 4.9e-17 91.7 127 44.1
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 1.1e-16 90.5 135 37.8
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 1.9e-16 89.7 143 39.9
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 2.4e-16 89.4 143 37.1
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 4.1e-16 88.6 136 36.0
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 9.2e-16 87.4 138 38.4
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 9.2e-16 87.4 138 38.4
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 1.6e-15 86.7 137 39.4
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 4.6e-15 85.1 139 38.1
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 7.8e-15 84.3 137 35.8
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 1.1e-13 80.5 137 35.0
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 1.1e-13 80.5 141 38.3
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 2.5e-13 79.3 137 38.0
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 3.3e-13 79.0 120 39.2
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 5.6e-13 78.2 125 35.2
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 9.5e-13 77.4 138 37.0
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 2.8e-12 75.9 136 36.8
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 8.1e-12 74.3 135 36.3
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 8.1e-12 74.3 130 35.4
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.8e-11 73.2 121 38.8
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 5.2e-11 71.6 131 37.4
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 8.9e-11 70.9 110 40.0
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 2.6e-10 69.3 139 35.3
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 4.4e-10 68.6 135 34.1
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 4.4e-10 68.6 130 34.6
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.3e-09 67.0 110 40.0
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 1.7e-09 66.6 135 33.3
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 3.7e-09 65.5 128 36.7
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 3.7e-09 65.5 117 36.8
TPR.G38487 Trifolium pratense HOM05D005726 ORTHO05D001733 3.7e-09 65.5 79 41.8
Migut.N03162 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.1e-08 63.9 134 33.6
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.9e-08 63.2 111 36.9
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 2.4e-08 62.8 115 34.8
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 3.2e-08 62.4 111 36.9
Peaxi162Scf00438g00833 Petunia axillaris HOM05D005726 ORTHO05D001733 3.2e-08 62.4 138 34.1
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 4.1e-08 62.0 111 36.9
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 4.1e-08 62.0 116 34.5
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 5.4e-08 61.6 110 39.1
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 5.4e-08 61.6 110 39.1
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 5.4e-08 61.6 110 39.1
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.2e-07 60.5 123 34.1
Peaxi162Scf00400g00087 Petunia axillaris HOM05D005726 ORTHO05D001733 2.7e-07 59.3 120 31.7
Solyc04g081460.2 Solanum lycopersicum HOM05D005726 ORTHO05D001733 2.7e-07 59.3 61 45.9
DCAR_006051 Daucus carota HOM05D005726 ORTHO05D001733 3.5e-07 58.9 118 34.7
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 3.5e-07 58.9 113 37.2
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 3.5e-07 58.9 115 36.5
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 4.6e-07 58.5 128 34.4
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 6.0e-07 58.2 132 34.1
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 6.0e-07 58.2 152 34.9
ClCG02G004310 Citrullus lanatus HOM05D007714 ORTHO05D009659 7.8e-07 57.8 109 36.7
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 7.8e-07 57.8 107 38.3
BcaB07g30277 Brassica carinata HOM05D005726 ORTHO05D001733 1.0e-06 57.4 41 70.7
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 1.0e-06 57.4 110 37.3
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 2.3e-06 56.2 108 36.1
MELO3C014664.2 Cucumis melo HOM05D003064 ORTHO05D001733 2.3e-06 56.2 108 33.3
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 2.3e-06 56.2 110 33.6
Potri.009G024500 Populus trichocarpa HOM05D003064 ORTHO05D001733 3.0e-06 55.8 115 37.4
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 3.0e-06 55.8 109 34.9
Aa31LG5G5080 Aethionema arabicum HOM05D003064 ORTHO05D001733 5.1e-06 55.1 111 36.9
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 5.1e-06 55.1 110 36.4
CARHR192990 Cardamine hirsuta HOM05D003064 ORTHO05D001733 6.6e-06 54.7 110 38.2
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 6.6e-06 54.7 140 34.3
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 6.6e-06 54.7 110 34.5
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 8.6e-06 54.3 110 36.4
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 8.6e-06 54.3 110 36.4
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 8.6e-06 54.3 110 36.4
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 8.6e-06 54.3 110 36.4
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 8.6e-06 54.3 132 33.3
FvH4_5g34311 Fragaria vesca HOM05D005726 ORTHO05D001733 8.6e-06 54.3 47 59.6


User provided reference genes

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