Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-48 196.1 108 100.0
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 6.7e-30 134.0 74 98.6
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 6.7e-30 134.0 74 98.6
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-29 133.3 78 96.2
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-29 132.1 74 97.3
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 3.3e-29 131.7 74 95.9
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 3.3e-29 131.7 76 93.4
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 5.7e-29 131.0 77 90.9
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 7.4e-29 130.6 76 93.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.3e-28 129.8 77 89.6
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 2.2e-28 129.0 76 90.8
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 2.8e-28 128.6 73 94.5
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.8e-28 128.6 75 93.3
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 4.8e-28 127.9 75 93.3
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 6.3e-28 127.5 74 93.2
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 8.2e-28 127.1 77 88.3
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 6.9e-27 124.0 76 88.2
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 2.6e-26 122.1 72 90.3
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 2.1e-23 112.5 76 80.3
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 6.1e-23 110.9 87 70.1
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.8e-22 109.4 78 78.2
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.0e-22 108.6 79 74.7
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.0e-22 108.6 79 74.7
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 5.1e-22 107.8 78 76.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 8.8e-22 107.1 79 73.4
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 8.8e-22 107.1 77 79.2
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 8.8e-22 107.1 77 77.9
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.5e-21 106.3 77 76.6
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 2.0e-21 105.9 77 77.9
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 4.4e-21 104.8 76 69.7
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.4e-21 104.8 76 73.7
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 5.7e-21 104.4 81 69.1
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.3e-20 103.2 75 76.0
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.2e-20 102.4 94 60.6
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.2e-20 102.4 94 60.6
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.7e-20 101.7 76 71.1
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 3.7e-20 101.7 77 71.4
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.4e-19 99.8 73 75.3
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 9.1e-19 97.1 77 68.8
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 9.1e-19 97.1 77 72.7
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.2e-18 96.7 80 68.8
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 2.0e-18 95.9 77 74.0
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.0e-18 95.9 98 59.2
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 2.6e-18 95.5 77 68.8
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.6e-18 95.5 97 56.7
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.6e-18 95.5 77 72.7
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 4.5e-18 94.7 77 72.7
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 4.5e-18 94.7 92 58.7
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.7e-18 94.0 97 56.7
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.0e-17 93.6 77 71.4
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.0e-17 93.6 77 67.5
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.0e-17 93.6 83 61.4
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.3e-17 93.2 73 71.2
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.2e-17 92.4 77 70.1
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.9e-17 92.0 97 55.7
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 2.9e-17 92.0 72 69.4
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 3.8e-17 91.7 77 66.2
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 5.0e-17 91.3 72 66.7
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 6.5e-17 90.9 75 66.7
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 6.5e-17 90.9 77 70.1
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 6.5e-17 90.9 73 60.3
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 8.5e-17 90.5 100 54.0
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 8.5e-17 90.5 100 54.0
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.1e-16 90.1 77 63.6
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.4e-16 89.7 70 68.6
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.4e-16 89.7 76 64.5
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.5e-16 89.0 71 66.2
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.5e-16 89.0 80 61.2
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.2e-16 88.6 72 68.1
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 3.2e-16 88.6 72 68.1
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 3.2e-16 88.6 73 58.9
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 3.2e-16 88.6 72 65.3
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.5e-16 87.8 101 52.5
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 5.5e-16 87.8 81 60.5
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 7.2e-16 87.4 69 66.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.2e-15 86.7 85 61.2
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.6e-15 86.3 69 69.6
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.6e-15 86.3 68 63.2
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.6e-15 86.3 68 67.6
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.1e-15 85.9 87 52.9
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 2.1e-15 85.9 88 53.4
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.1e-15 85.9 74 67.6
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 2.1e-15 85.9 84 57.1
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 2.7e-15 85.5 70 64.3
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 3.6e-15 85.1 77 59.7
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.7e-15 84.7 101 51.5
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 4.7e-15 84.7 70 65.7
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.1e-15 84.3 103 50.5
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 6.1e-15 84.3 73 63.0
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 6.1e-15 84.3 85 57.6
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 6.1e-15 84.3 68 64.7
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 8.0e-15 84.0 62 69.4
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 8.0e-15 84.0 75 62.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 8.0e-15 84.0 87 54.0
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.4e-14 83.2 70 62.9
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.4e-14 83.2 91 47.3
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 6.7e-14 80.9 68 63.2
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 8.8e-14 80.5 61 68.9
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 8.8e-14 80.5 101 52.5
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 8.8e-14 80.5 65 64.6
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-13 80.1 49 87.8
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 1.1e-13 80.1 49 87.8
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.6e-13 79.0 83 48.2
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 7.4e-13 77.4 73 54.8
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.7e-12 76.3 77 58.4
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 1.7e-12 76.3 65 61.5
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.8e-12 75.5 72 54.2
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-11 73.6 68 60.3
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.2e-10 70.1 80 52.5
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 4.5e-10 68.2 37 97.3
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 5.9e-10 67.8 54 64.8
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 7.7e-10 67.4 70 54.3
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.7e-09 66.2 67 58.2
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.9e-09 65.5 64 60.9
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 8.5e-09 63.9 68 50.0
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 5.5e-08 61.2 64 53.1
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 9.4e-08 60.5 66 47.0
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 6.1e-07 57.8 35 91.4
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.4e-06 56.6 89 41.6


User provided reference genes

Program Settings