Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 2.4e-102 375.6 195 100.0
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 4.9e-71 271.6 202 76.7
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 1.1e-70 270.4 202 76.2
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 7.3e-67 257.7 202 73.3
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 1.3e-63 246.9 205 70.7
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 2.7e-61 239.2 202 68.8
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 3.5e-61 238.8 202 68.8
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 3.5e-61 238.8 205 68.8
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 7.8e-61 237.7 202 68.3
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 8.6e-60 234.2 202 67.8
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 8.6e-60 234.2 202 67.8
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 3.3e-59 232.3 202 67.3
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 1.6e-58 229.9 205 65.9
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 2.1e-58 229.6 205 65.9
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 2.8e-58 229.2 205 65.9
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 3.1e-57 225.7 201 65.7
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 9.2e-54 214.2 205 61.5
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 2.0e-53 213.0 188 62.2
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 2.3e-52 209.5 185 62.7
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 2.5e-51 206.1 189 58.2
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 5.6e-51 204.9 193 60.6
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 9.5e-51 204.1 198 59.1
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 9.5e-51 204.1 188 58.5
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 1.6e-50 203.4 204 63.7
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 2.8e-50 202.6 197 58.9
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 3.6e-50 202.2 184 60.9
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.4e-49 200.3 186 59.7
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 1.8e-49 199.9 197 58.4
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 3.1e-49 199.1 188 58.5
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 3.1e-49 199.1 190 57.4
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 4.0e-49 198.7 192 59.9
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 1.2e-48 197.2 197 56.9
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 2.0e-48 196.4 184 59.8
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 2.6e-48 196.1 197 57.4
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 4.4e-48 195.3 200 58.0
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 4.4e-48 195.3 187 57.8
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.8e-48 194.9 188 57.4
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 5.8e-48 194.9 201 55.2
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 9.9e-48 194.1 185 58.9
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.3e-47 193.7 185 57.3
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 1.3e-47 193.7 189 57.1
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.7e-47 193.4 188 56.9
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 1.7e-47 193.4 198 55.6
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 2.9e-47 192.6 188 54.3
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 2.9e-47 192.6 200 54.0
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.9e-47 192.6 189 56.1
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 2.9e-47 192.6 225 52.9
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 3.7e-47 192.2 191 55.5
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 3.7e-47 192.2 186 58.1
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 6.4e-47 191.4 190 55.3
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 6.4e-47 191.4 201 54.2
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 8.3e-47 191.0 188 56.4
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.1e-46 190.7 189 56.1
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 1.4e-46 190.3 197 55.3
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 1.4e-46 190.3 201 54.7
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.4e-46 190.3 201 55.2
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 1.9e-46 189.9 139 75.5
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.9e-46 189.9 184 57.1
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 3.2e-46 189.1 187 55.1
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.2e-45 187.2 188 56.4
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 1.2e-45 187.2 199 54.3
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.2e-45 187.2 196 54.1
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 2.1e-45 186.4 184 57.1
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 2.1e-45 186.4 185 56.2
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 2.1e-45 186.4 203 51.7
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.1e-45 186.4 195 52.3
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 2.1e-45 186.4 186 54.8
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 4.6e-45 185.3 192 55.7
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 4.6e-45 185.3 204 51.5
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 4.6e-45 185.3 186 54.8
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 7.8e-45 184.5 194 55.2
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 1.3e-44 183.7 199 54.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.7e-44 183.3 195 51.8
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.7e-44 183.3 184 55.4
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 3.9e-44 182.2 200 52.5
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 8.6e-44 181.0 220 50.0
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.1e-43 180.6 195 53.8
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.1e-43 180.6 188 54.8
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.5e-43 180.3 187 53.5
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.2e-42 177.2 206 50.0
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.2e-42 177.2 183 54.1
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 1.6e-42 176.8 194 50.5
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.6e-42 176.8 199 51.8
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.1e-42 176.4 186 52.2
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 2.8e-42 176.0 183 54.6
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 2.8e-42 176.0 190 52.6
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.6e-42 175.6 185 53.0
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 3.6e-42 175.6 201 51.7
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 4.7e-42 175.3 186 51.6
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 3.1e-41 172.6 200 51.0
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 4.0e-41 172.2 200 51.5
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 5.2e-41 171.8 184 53.3
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 1.2e-40 170.6 187 52.4
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 1.5e-40 170.2 200 51.0
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 2.0e-40 169.9 182 52.2
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 3.4e-40 169.1 187 50.3
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 4.4e-40 168.7 182 52.7
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 5.8e-40 168.3 182 52.2
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 7.6e-40 167.9 181 51.9
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 7.6e-40 167.9 187 51.9
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 7.6e-40 167.9 190 48.9
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 7.6e-40 167.9 199 52.3
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 9.9e-40 167.5 190 48.9
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 1.3e-39 167.2 186 52.2
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 1.7e-39 166.8 110 85.5
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 2.2e-39 166.4 189 49.2
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 8.4e-39 164.5 110 79.1
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 8.4e-39 164.5 182 51.1
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 8.4e-39 164.5 183 48.6
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.9e-38 163.3 188 50.5
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 5.4e-38 161.8 185 49.2
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 9.2e-38 161.0 154 53.2
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 7.8e-37 157.9 200 50.0
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.3e-36 157.1 189 47.1
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 3.0e-36 156.0 244 44.7
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 3.9e-36 155.6 187 47.1
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 6.6e-36 154.8 186 51.1
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.1e-35 154.1 188 48.9
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 1.5e-35 153.7 152 51.3
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.3e-35 152.5 193 48.7
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 4.3e-35 152.1 182 48.9
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 8.1e-34 147.9 120 65.0
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.1e-33 147.5 132 58.3
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 1.8e-33 146.7 154 48.1
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 4.0e-33 145.6 156 53.2
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 5.2e-33 145.2 198 44.9
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 2.9e-31 139.4 182 47.3
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 1.1e-30 137.5 188 46.3
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 3.2e-30 136.0 185 45.9
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 7.1e-30 134.8 114 64.9
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 2.7e-29 132.9 198 40.9
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.0e-28 131.0 112 65.2
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 3.9e-28 129.0 136 50.0
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 3.9e-28 129.0 112 62.5
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.8e-26 122.9 115 58.3
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 1.1e-25 120.9 187 42.8
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.6e-24 116.3 182 36.3
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 1.4e-22 110.5 177 39.0
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 7.1e-22 108.2 189 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 2.1e-21 106.7 109 55.0
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 6.0e-21 105.1 93 64.5
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.6e-18 97.1 82 70.7
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 6.9e-17 91.7 112 45.5
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 6.4e-15 85.1 55 80.0
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 6.4e-15 85.1 55 80.0
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 3.2e-14 82.8 88 61.4
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 4.2e-14 82.4 54 75.9
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 2.1e-13 80.1 153 31.4
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 1.3e-12 77.4 90 54.4
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 1.3e-10 70.9 63 71.4
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 1.6e-10 70.5 45 73.3
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 2.8e-10 69.7 182 28.6
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 2.4e-09 66.6 82 45.1
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 6.9e-09 65.1 82 42.7
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.3e-07 60.8 185 28.6
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 8.4e-07 58.2 56 62.5
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 3.2e-06 56.2 114 37.7


User provided reference genes

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