Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.3e-230 802.7 404 100.0
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-230 802.7 404 100.0
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.9e-226 788.9 400 99.0
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 9.3e-226 786.6 397 99.5
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.3e-224 782.7 403 97.8
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.3e-224 782.7 403 97.8
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 3.0e-224 781.6 404 97.5
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 3.9e-224 781.2 404 97.8
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 8.7e-224 780.0 403 97.5
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.1e-223 779.6 404 97.0
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 1.1e-223 779.6 402 97.5
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.3e-223 778.1 403 97.3
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.3e-222 776.2 402 97.0
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-222 776.2 402 97.0
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 6.2e-222 773.9 392 99.5
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.2e-220 769.6 401 96.5
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.5e-220 769.2 401 96.8
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.7e-217 758.4 403 94.8
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.0e-216 756.5 401 94.3
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.0e-216 756.5 401 94.5
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 2.3e-216 755.4 403 95.3
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 6.7e-216 753.8 401 93.8
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.3e-214 749.6 401 93.5
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 1.9e-207 725.7 401 90.3
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.9e-207 725.7 404 92.3
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.1e-197 691.4 401 83.8
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.0e-195 686.8 400 84.5
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 2.5e-178 629.0 396 78.5
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 3.2e-178 628.6 399 78.2
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 3.2e-178 628.6 399 78.9
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.6e-177 626.3 396 78.3
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 2.7e-177 625.5 401 76.1
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 6.1e-177 624.4 399 77.2
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 6.1e-177 624.4 403 76.7
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 1.4e-176 623.2 399 76.7
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 5.2e-176 621.3 400 77.0
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 6.8e-176 620.9 402 76.4
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 1.2e-175 620.2 402 76.1
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 2.0e-175 619.4 401 75.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 4.4e-175 618.2 399 76.2
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 7.5e-175 617.5 401 75.1
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 1.7e-174 616.3 401 74.8
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.2e-174 615.9 407 75.7
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.2e-174 615.9 402 75.9
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 2.8e-174 615.5 399 76.2
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 2.8e-174 615.5 399 74.4
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.8e-174 615.5 401 74.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 3.7e-174 615.1 401 74.6
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 3.7e-174 615.1 399 73.7
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 3.7e-174 615.1 399 76.7
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 4.8e-174 614.8 401 74.6
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 6.3e-174 614.4 401 77.1
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 6.3e-174 614.4 401 74.8
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 6.3e-174 614.4 399 73.7
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 8.3e-174 614.0 402 75.1
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 1.4e-173 613.2 401 74.6
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.8e-173 612.8 401 74.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 2.4e-173 612.5 401 74.6
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 3.1e-173 612.1 401 74.3
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 3.1e-173 612.1 400 73.8
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 7.0e-173 610.9 433 70.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 7.0e-173 610.9 396 76.8
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 9.1e-173 610.5 397 76.3
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.6e-172 609.8 401 74.6
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.6e-172 609.8 396 75.8
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.6e-172 609.8 401 76.1
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 2.0e-172 609.4 425 72.9
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 2.0e-172 609.4 402 75.1
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.5e-172 608.6 402 76.1
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 3.5e-172 608.6 407 75.4
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 5.9e-172 607.8 399 74.2
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.7e-171 606.3 401 76.3
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 2.3e-171 605.9 399 73.9
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 3.8e-171 605.1 402 73.4
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 5.0e-171 604.7 399 74.7
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 8.6e-171 604.0 396 76.3
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.5e-170 603.2 412 73.1
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.9e-170 602.8 397 75.3
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.5e-170 602.4 401 73.6
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.5e-170 602.4 401 73.6
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 9.5e-170 600.5 396 75.8
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.2e-169 600.1 402 72.9
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 1.6e-169 599.7 395 74.2
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 2.1e-169 599.4 399 73.4
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 2.8e-169 599.0 401 75.3
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 3.6e-169 598.6 361 79.8
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 4.7e-169 598.2 406 74.4
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 4.7e-169 598.2 399 72.7
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 8.0e-169 597.4 401 73.6
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 8.0e-169 597.4 419 70.2
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 3.0e-168 595.5 397 73.3
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.2e-167 593.6 400 73.2
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.5e-167 593.2 360 81.1
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 2.6e-167 592.4 402 73.1
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.7e-167 591.3 406 72.7
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 1.3e-166 590.1 402 72.9
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 2.2e-166 589.3 396 73.7
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.1e-165 587.0 401 72.3
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.8e-165 586.3 390 74.6
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 3.5e-164 582.0 400 72.8
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 2.3e-163 579.3 385 74.3
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 3.8e-163 578.6 404 71.0
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 6.6e-163 577.8 395 73.7
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 3.6e-161 572.0 400 71.2
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.7e-161 571.6 501 61.3
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.0e-159 566.2 445 65.8
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.7e-158 562.0 445 65.4
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 3.5e-156 555.4 418 67.2
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.9e-155 552.0 454 65.9
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.1e-152 543.9 554 54.9
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.0e-151 539.7 397 65.7
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.5e-148 528.9 355 75.2
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 6.2e-145 518.1 309 80.3
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.7e-137 491.9 330 75.5
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 2.2e-134 483.0 318 77.0
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 5.6e-130 468.4 355 67.3
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 7.3e-130 468.0 290 76.2
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 3.2e-117 426.0 354 59.9
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.0e-115 421.0 345 65.5
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 2.3e-115 419.9 398 53.8
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.6e-113 413.7 360 55.6
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 2.8e-113 412.9 297 71.7
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 7.9e-108 394.8 339 55.2
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 2.6e-95 353.2 357 49.3
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 3.1e-88 329.7 242 73.1
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 3.0e-83 313.2 222 70.3
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.8e-80 303.9 284 51.1
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 4.7e-76 289.3 350 44.0
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.3e-70 271.2 363 41.3
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 1.7e-62 244.2 401 38.9
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 3.4e-58 229.9 239 54.0
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.2e-55 221.5 214 59.8
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.6e-55 221.1 171 68.4
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 2.7e-55 220.3 273 49.1
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 8.6e-46 188.7 99 91.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.4e-34 149.8 80 88.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 7.5e-34 149.1 82 87.8
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.4e-26 123.6 129 55.0
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.4e-26 123.2 80 68.8
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 3.0e-22 110.5 67 83.6
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 1.4e-19 101.7 105 47.6
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.4e-19 100.9 61 75.4
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 3.4e-10 70.5 64 57.8
AagrBONN_evm.TU.Sc2ySwM_369.460 Anthoceros agrestis HOM05D006883 ORTHO05D008624 1.9e-08 64.7 272 25.0
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 9.3e-08 62.4 275 23.3
Nitab4.5_0002986g0100 Nicotiana tabacum HOM05D006883 ORTHO05D008624 1.2e-07 62.0 281 25.3
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.6e-07 61.6 82 42.7
AUR62041032 Chenopodium quinoa HOM05D006883 ORTHO05D008624 3.5e-07 60.5 277 23.5
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 4.6e-07 60.1 303 23.4
Nitab4.5_0000829g0010 Nicotiana tabacum HOM05D006883 ORTHO05D008624 4.6e-07 60.1 277 24.9
Ca_00572_v3 Cicer arietinum L. HOM05D006883 ORTHO05D008624 7.8e-07 59.3 284 25.0
Cc03_g02320 Coffea canephora HOM05D006883 ORTHO05D008624 7.8e-07 59.3 283 23.0
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 7.8e-07 59.3 282 25.5
Phvul.006G161600 Phaseolus vulgaris HOM05D006883 ORTHO05D008624 7.8e-07 59.3 278 23.4
arahy.Tifrunner.gnm1.ann1.WI0ZBZ Arachis hypogaea HOM05D006883 ORTHO05D008624 1.0e-06 58.9 277 24.2
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 1.0e-06 58.9 308 26.0
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 1.0e-06 58.9 279 25.1
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 1.0e-06 58.9 278 23.7
Mapoly0040s0084 Marchantia polymorpha HOM05D005785 ORTHO05D007017 1.0e-06 58.9 167 28.1
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 1.3e-06 58.5 286 24.8
RcHm_v2.0_Chr4g0421151 Rosa chinensis HOM05D006883 ORTHO05D008624 1.3e-06 58.5 283 23.0
arahy.Tifrunner.gnm1.ann1.GN2N7N Arachis hypogaea HOM05D006883 ORTHO05D008624 1.7e-06 58.2 277 24.2
Actinidia23426 Actinidia chinensis HOM05D006883 ORTHO05D008624 2.3e-06 57.8 275 23.3
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 3.0e-06 57.4 279 24.7
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 3.0e-06 57.4 279 24.7
CSS0011936 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 3.0e-06 57.4 284 23.2
Mapoly0058s0049 Marchantia polymorpha HOM05D006883 ORTHO05D008624 3.0e-06 57.4 340 22.9
Thecc.04G278100 Theobroma cacao HOM05D006883 ORTHO05D008624 3.0e-06 57.4 280 22.9
vmacro08200 Vaccinium macrocarpon HOM05D006883 ORTHO05D008624 3.0e-06 57.4 275 22.9
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 3.9e-06 57.0 307 25.7
FAN17G0491 Fragaria x ananassa HOM05D006883 ORTHO05D008624 3.9e-06 57.0 321 22.1
AL6G29930 Arabidopsis lyrata HOM05D006883 ORTHO05D008624 5.1e-06 56.6 303 23.1
Peaxi162Scf00386g00096 Petunia axillaris HOM05D006883 ORTHO05D008624 5.1e-06 56.6 283 24.0
Sp6g25680 Schrenkiella parvula HOM05D006883 ORTHO05D008624 5.1e-06 56.6 303 22.8
Carub.0006s1695 Capsella rubella HOM05D006883 ORTHO05D008624 6.6e-06 56.2 303 22.8
QL06p007513 Quercus lobata HOM05D006883 ORTHO05D008624 6.6e-06 56.2 275 22.5
CAN.G556.8 Capsicum annuum HOM05D006883 ORTHO05D008624 8.7e-06 55.8 276 23.2
CDE11G0693 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 8.7e-06 55.8 275 22.5
Thhalv10013668m.g Eutrema salsugineum HOM05D006883 ORTHO05D008624 8.7e-06 55.8 339 23.6
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 8.7e-06 55.8 265 25.7


User provided reference genes

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