Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 5.0e-249 864.0 444 100.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.6e-245 851.7 452 97.6
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 9.8e-245 849.7 447 98.2
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 6.4e-236 820.5 455 94.9
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.0e-233 813.1 455 94.5
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 2.3e-225 785.4 452 90.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 5.6e-208 727.6 459 83.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.6e-205 718.8 463 82.9
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 6.4e-204 714.1 468 81.2
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 7.1e-203 710.7 464 82.1
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-199 698.7 461 80.9
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 6.9e-198 694.1 458 80.3
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 6.9e-198 694.1 463 80.1
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 7.9e-194 680.6 469 77.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 3.4e-189 665.2 446 79.1
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.9e-185 651.7 472 73.1
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.1e-182 643.7 472 72.5
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 7.9e-178 627.5 476 71.2
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.5e-168 596.7 480 68.3
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 9.7e-168 594.0 483 66.5
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 9.1e-158 560.8 460 66.7
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.6e-157 560.1 478 65.1
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 8.8e-153 544.3 485 60.8
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.0e-152 543.1 486 60.5
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 2.0e-152 543.1 486 60.5
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 5.4e-150 535.0 486 59.7
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 5.0e-148 528.5 485 58.1
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 8.6e-148 527.7 480 62.1
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 2.8e-146 522.7 495 58.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 8.9e-145 517.7 486 57.4
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.3e-143 513.8 488 57.0
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.8e-142 510.0 490 55.3
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.4e-142 509.6 494 57.1
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 9.2e-142 507.7 481 58.6
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 2.0e-141 506.5 484 56.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.0e-141 506.5 486 56.2
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 5.9e-141 505.0 497 57.3
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.0e-140 504.2 489 56.0
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.0e-140 504.2 480 58.1
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.9e-140 502.3 500 54.8
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.6e-140 501.1 486 56.6
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.5e-139 499.6 458 58.1
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.5e-139 497.7 494 56.3
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 2.1e-138 496.5 487 55.9
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 6.1e-138 495.0 486 54.7
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.3e-137 493.0 456 59.0
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.5e-136 490.3 488 56.4
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 5.8e-136 488.4 500 54.2
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 9.8e-136 487.6 500 54.2
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.3e-135 487.3 482 55.6
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 6.4e-135 485.0 490 53.3
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 8.3e-135 484.6 478 54.6
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 2.4e-134 483.0 488 53.7
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 2.4e-134 483.0 487 56.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 9.2e-134 481.1 377 71.1
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.9e-132 475.7 461 54.7
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.0e-132 475.3 490 52.4
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 5.0e-132 475.3 487 53.2
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-131 473.8 482 52.5
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.5e-131 473.8 499 52.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.5e-131 473.0 478 55.2
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 9.5e-131 471.1 498 53.2
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.6e-130 470.3 486 53.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.1e-130 469.9 489 53.4
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 6.2e-130 468.4 495 52.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 6.2e-130 468.4 512 52.5
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.2e-129 465.3 489 52.4
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 6.8e-129 464.9 457 56.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 6.8e-129 464.9 492 52.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 6.8e-129 464.9 488 53.3
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.2e-128 464.2 482 51.9
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-128 464.2 513 49.7
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-128 464.2 475 52.0
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.5e-128 463.8 499 52.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.5e-128 463.8 488 52.9
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.8e-128 461.8 489 51.9
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 5.8e-128 461.8 499 52.1
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.8e-128 461.1 469 52.9
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.2e-127 459.9 491 51.5
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.4e-126 456.4 452 53.5
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 5.4e-126 455.3 485 52.0
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 5.4e-126 455.3 488 51.4
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.2e-125 454.1 479 50.7
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.1e-125 453.4 498 49.8
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 4.6e-125 452.2 444 54.7
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 6.0e-125 451.8 481 53.0
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.7e-124 450.3 493 51.5
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.7e-124 450.3 455 54.5
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 5.1e-124 448.7 475 50.7
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 8.6e-124 448.0 485 50.1
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.5e-123 447.2 436 55.0
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.9e-123 446.8 486 50.6
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 4.3e-123 445.7 488 52.7
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 9.5e-123 444.5 486 50.0
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.6e-122 443.7 453 53.9
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.5e-120 437.2 488 51.2
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.5e-120 437.2 512 49.8
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.3e-119 434.1 427 56.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 6.4e-119 431.8 480 50.2
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 3.2e-118 429.5 487 49.3
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 5.4e-118 428.7 479 48.9
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 7.1e-118 428.3 435 53.6
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 6.0e-117 425.2 494 49.4
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.3e-116 424.1 496 47.8
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 5.1e-116 422.2 441 52.6
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.5e-115 420.6 488 49.4
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.5e-115 419.9 453 52.1
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 4.3e-115 419.1 486 49.4
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.1e-113 414.5 482 49.0
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.4e-113 414.1 483 49.3
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.4e-113 413.3 406 54.4
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 5.8e-112 408.7 549 45.7
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.3e-111 407.5 583 43.1
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.8e-111 406.0 446 51.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 3.2e-110 402.9 487 47.6
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 6.6e-108 395.2 517 45.6
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.3e-107 392.5 509 46.2
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 4.8e-106 389.0 453 49.7
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 8.1e-106 388.3 467 47.8
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 6.9e-105 385.2 398 50.3
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.6e-104 383.3 530 43.4
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.4e-104 382.9 530 43.4
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 5.8e-104 382.1 493 45.8
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 5.4e-102 375.6 474 44.7
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 7.1e-102 375.2 485 45.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 5.1e-100 369.0 448 46.7
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 5.1e-100 369.0 446 46.0
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.3e-99 365.2 384 52.1
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 6.2e-98 362.1 453 47.2
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 8.1e-90 335.1 484 41.1
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.5e-88 330.9 447 45.0
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 2.2e-87 327.0 396 48.7
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 5.1e-84 315.8 499 41.5
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.4e-81 307.0 417 44.1
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 5.3e-81 305.8 217 68.2
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.9e-79 300.1 476 42.9
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 5.5e-78 295.8 459 39.0
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 4.6e-77 292.7 217 65.0
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.6e-74 284.3 364 45.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 6.9e-73 278.9 367 43.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 9.0e-73 278.5 482 39.0
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.8e-68 264.2 291 47.8
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 3.0e-68 263.5 212 56.6
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 5.1e-68 262.7 342 45.9
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 6.7e-68 262.3 274 48.9
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.7e-67 259.2 290 47.6
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 3.5e-56 223.4 177 59.9
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.8e-42 177.2 348 33.6
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.3e-42 175.6 135 63.0
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.7e-39 167.9 157 56.7
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.7e-37 160.6 262 42.4
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-35 154.8 311 37.3
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 2.0e-32 144.4 233 41.2
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 5.0e-31 139.8 234 32.5
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 2.5e-30 137.5 176 37.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 4.7e-29 133.3 94 63.8
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 3.9e-23 113.6 228 36.4
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.4e-20 105.1 65 70.8
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 7.5e-19 99.4 122 48.4
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 6.4e-18 96.3 77 58.4
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.5e-14 84.3 113 45.1
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.8e-12 78.2 89 48.3
BolC1t02302H Brassica oleracea HOM05D026626 ORTHO05D027483 1.7e-10 71.6 138 38.4
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 3.7e-10 70.5 138 37.7
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.7e-08 64.3 50 58.0
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 3.9e-07 60.5 54 51.9


User provided reference genes

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