Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 8.2e-38 159.8 78 100.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 3.6e-25 117.9 161 47.8
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 6.1e-25 117.1 78 79.5
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 1.8e-24 115.5 78 76.9
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.8e-24 115.5 78 76.9
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.5e-23 112.5 78 75.6
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.2e-22 108.6 78 73.1
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.2e-22 108.6 78 73.1
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.8e-22 108.2 78 73.1
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.8e-22 108.2 78 71.8
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.4e-21 105.9 78 70.5
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 9.1e-21 103.2 78 70.5
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.6e-20 102.4 78 67.9
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.5e-20 101.3 78 67.9
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 3.5e-20 101.3 78 66.7
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 7.7e-20 100.1 78 66.7
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.0e-19 99.8 78 65.4
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.0e-19 99.8 78 66.7
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-19 99.8 78 66.7
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-19 99.8 78 66.7
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-19 99.8 78 66.7
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-19 99.8 78 66.7
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.0e-19 99.8 78 66.7
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.3e-19 99.4 78 64.1
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.7e-19 99.0 78 64.1
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.7e-19 99.0 78 62.8
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.7e-19 99.0 78 65.4
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.3e-19 98.6 78 64.1
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.3e-19 98.6 78 64.1
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 2.3e-19 98.6 78 65.4
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.3e-19 98.6 78 64.1
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 2.3e-19 98.6 78 64.1
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 2.9e-19 98.2 78 65.4
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 2.9e-19 98.2 78 65.4
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 2.9e-19 98.2 78 65.4
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.8e-19 97.8 78 62.8
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 5.0e-19 97.4 78 62.8
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 5.0e-19 97.4 78 65.4
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 6.6e-19 97.1 78 62.8
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 6.6e-19 97.1 78 65.4
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 6.6e-19 97.1 78 66.7
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.6e-19 96.7 78 65.4
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 8.6e-19 96.7 78 64.1
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 8.6e-19 96.7 78 64.1
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 8.6e-19 96.7 78 65.4
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 8.6e-19 96.7 78 61.5
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 1.1e-18 96.3 78 64.1
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.1e-18 96.3 78 65.4
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 1.1e-18 96.3 78 60.3
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.1e-18 96.3 78 62.8
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.1e-18 96.3 78 62.8
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.1e-18 96.3 78 64.1
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.5e-18 95.9 78 61.5
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.9e-18 95.5 78 62.8
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.9e-18 95.5 78 65.4
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 2.5e-18 95.1 78 61.5
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.5e-18 95.1 78 61.5
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.5e-18 95.1 78 61.5
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.5e-18 95.1 77 66.2
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 2.5e-18 95.1 77 64.9
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 3.3e-18 94.7 78 64.1
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 3.3e-18 94.7 78 61.5
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.2e-18 94.4 78 62.8
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 4.2e-18 94.4 77 64.9
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 5.5e-18 94.0 78 62.8
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.2e-18 93.6 75 66.7
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 7.2e-18 93.6 78 60.3
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 9.5e-18 93.2 78 61.5
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 9.5e-18 93.2 78 62.8
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 9.5e-18 93.2 78 62.8
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.2e-17 92.8 71 69.0
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.2e-17 92.8 78 60.3
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.2e-17 92.8 78 62.8
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.2e-17 92.8 78 59.0
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.2e-17 92.8 78 60.3
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.2e-17 92.8 78 62.8
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.2e-17 92.8 78 60.3
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.6e-17 92.4 78 60.3
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.6e-17 92.4 78 61.5
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.6e-17 92.4 78 61.5
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.6e-17 92.4 77 59.7
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.6e-17 92.4 77 59.7
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.6e-17 92.4 78 60.3
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.6e-17 92.4 78 61.5
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 2.1e-17 92.0 78 60.3
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.8e-17 91.7 78 60.3
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.8e-17 91.7 78 61.5
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.8e-17 91.7 77 63.6
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.8e-17 91.7 77 63.6
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 3.6e-17 91.3 78 62.8
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 3.6e-17 91.3 77 63.6
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 6.1e-17 90.5 78 60.3
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 8.0e-17 90.1 75 62.7
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 8.0e-17 90.1 78 59.0
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.0e-16 89.7 78 57.7
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.4e-16 89.4 78 59.0
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.4e-16 89.4 78 59.0
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.8e-16 89.0 78 59.0
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 2.3e-16 88.6 77 61.0
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 3.0e-16 88.2 78 59.0
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.0e-16 88.2 78 57.7
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.2e-15 86.3 78 57.7
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.2e-15 86.3 90 51.1
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.5e-15 85.9 78 56.4
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 2.0e-15 85.5 78 60.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.6e-15 85.1 78 56.4
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 5.7e-15 84.0 87 49.4
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 7.5e-15 83.6 78 56.4
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 8.3e-14 80.1 78 53.8
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-13 79.7 68 64.7
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 3.2e-13 78.2 61 70.5
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 3.2e-13 78.2 61 70.5
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 4.1e-13 77.8 78 53.8
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 5.4e-13 77.4 62 67.7
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.6e-12 75.9 68 58.8
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.0e-12 75.5 62 66.1
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.7e-11 72.4 68 55.9
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 5.0e-11 70.9 78 48.7
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 6.6e-11 70.5 49 71.4
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 9.5e-10 66.6 44 72.7
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 9.5e-10 66.6 44 72.7
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 9.5e-10 66.6 44 72.7
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 9.5e-10 66.6 44 72.7
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 9.5e-10 66.6 44 72.7
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.4e-08 62.8 44 68.2
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 6.8e-08 60.5 76 48.7
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 2.6e-07 58.5 47 57.4
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.4e-07 58.2 76 46.1
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 2.2e-06 55.5 47 57.4


User provided reference genes

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