Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 2.5e-127 458.8 230 100.0
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 3.3e-119 431.8 229 95.6
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 2.2e-115 419.1 229 93.9
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 2.5e-114 415.6 227 93.8
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 4.3e-111 404.8 225 92.0
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 4.6e-105 384.8 217 89.9
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 7.4e-103 377.5 223 86.5
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 5.9e-100 367.9 231 81.4
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 2.8e-94 349.0 222 80.2
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 8.0e-89 330.9 215 75.3
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 6.7e-88 327.8 214 74.8
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 6.7e-88 327.8 214 74.8
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 3.3e-87 325.5 216 71.3
QL06p051396 Quercus lobata HOM05D006745 ORTHO05D008449 4.4e-87 325.1 215 74.4
Cfa007050 Carpinus fangiana HOM05D006745 ORTHO05D008449 5.7e-87 324.7 215 74.9
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 7.4e-87 324.3 216 70.8
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 7.4e-87 324.3 217 75.1
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 1.7e-86 323.2 219 73.5
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 2.2e-86 322.8 219 72.1
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 6.3e-86 321.2 219 73.1
Oeu058205.1 Olea europaea HOM05D006745 ORTHO05D008449 1.4e-85 320.1 214 74.3
Oeu058207.1 Olea europaea HOM05D006745 ORTHO05D008449 1.4e-85 320.1 214 74.3
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 3.1e-85 318.9 219 73.1
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 3.1e-85 318.9 214 72.9
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 4.1e-85 318.5 219 71.7
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 5.3e-85 318.2 215 73.0
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 5.3e-85 318.2 214 74.3
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 1.6e-84 316.6 226 69.5
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 1.6e-84 316.6 226 75.7
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 2.6e-84 315.8 214 71.5
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 2.6e-84 315.8 214 71.5
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 2.6e-84 315.8 214 72.4
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 2.6e-84 315.8 224 71.9
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.5e-84 315.5 219 71.7
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 3.5e-84 315.5 218 68.8
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 4.5e-84 315.1 218 71.1
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 7.7e-84 314.3 216 72.2
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 1.0e-83 313.9 214 71.0
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 1.3e-83 313.5 214 70.1
Thhalv10023706m.g Eutrema salsugineum HOM05D006745 ORTHO05D008449 1.7e-83 313.2 219 75.8
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 1.7e-83 313.2 212 72.2
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 5.0e-83 311.6 216 69.9
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 6.5e-83 311.2 208 72.6
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 1.1e-82 310.5 214 72.4
vmacro18434 Vaccinium macrocarpon HOM05D006745 ORTHO05D008449 1.1e-82 310.5 215 71.6
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 1.5e-82 310.1 223 68.6
FAN23G2677 Fragaria x ananassa HOM05D006745 ORTHO05D008449 2.5e-82 309.3 218 71.1
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 2.5e-82 309.3 215 71.6
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 3.2e-82 308.9 212 71.7
FAN26G1827 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.2e-82 308.9 220 70.5
CSS0026839 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 4.2e-82 308.5 207 72.9
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 4.2e-82 308.5 218 70.6
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 5.5e-82 308.1 219 69.9
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 5.5e-82 308.1 214 72.4
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 7.2e-82 307.8 221 69.7
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 9.4e-82 307.4 215 71.2
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 9.4e-82 307.4 215 71.2
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 1.6e-81 306.6 213 70.0
Sabra05G0089300 Salix brachista HOM05D006745 ORTHO05D008449 3.6e-81 305.4 204 73.0
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 3.6e-81 305.4 213 69.0
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 4.7e-81 305.1 221 67.9
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 6.1e-81 304.7 207 72.0
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 1.4e-80 303.5 222 67.6
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 1.4e-80 303.5 214 70.1
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 1.8e-80 303.1 201 73.6
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 1.8e-80 303.1 212 68.4
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 4.0e-80 302.0 216 68.1
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 5.2e-80 301.6 216 69.4
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 1.5e-79 300.1 214 68.7
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 3.3e-79 298.9 190 75.8
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 5.7e-79 298.1 223 73.1
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 3.7e-78 295.4 244 62.7
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 6.3e-78 294.7 221 64.7
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 6.3e-78 294.7 217 66.4
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 5.9e-76 288.1 226 64.6
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 2.2e-75 286.2 218 63.8
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 2.2e-75 286.2 212 64.2
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 3.8e-75 285.4 222 68.0
Thecc.01G012900 Theobroma cacao HOM05D006745 ORTHO05D008449 5.5e-74 281.6 216 67.6
CiPaw.07G062000 Carya illinoinensis HOM05D006745 ORTHO05D008449 2.7e-73 279.3 217 65.9
Duzib147G0156 Durio zibethinus HOM05D006745 ORTHO05D008449 3.6e-73 278.9 220 64.5
ClCG01G020530 Citrullus lanatus HOM05D006745 ORTHO05D008449 1.0e-72 277.3 239 59.8
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 2.3e-72 276.2 214 61.2
unitig_60.g25574 Utricularia gibba HOM05D006745 ORTHO05D008449 6.8e-72 274.6 261 56.7
AUR62018011 Chenopodium quinoa HOM05D006745 ORTHO05D008449 6.3e-70 268.1 185 72.4
Atru.chr3.895 Acer truncatum HOM05D006745 ORTHO05D008449 2.9e-67 259.2 215 64.2
CARHR047310 Cardamine hirsuta HOM05D006745 ORTHO05D008449 1.2e-65 253.8 148 85.8
Peaxi162Scf00439g00049 Petunia axillaris HOM05D006745 ORTHO05D008449 3.7e-62 242.3 262 52.3
Atru.chr3.884 Acer truncatum HOM05D006745 ORTHO05D008449 2.4e-61 239.6 188 66.5
FvH4_1g11230 Fragaria vesca HOM05D006745 ORTHO05D008449 2.4e-61 239.6 169 71.0
CARHR047280 Cardamine hirsuta HOM05D006745 ORTHO05D008449 4.1e-61 238.8 219 59.8
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 2.0e-60 236.5 209 61.7
CDE05G1799 Ceratophyllum demersum HOM05D006745 ORTHO05D008449 5.9e-60 235.0 160 70.0
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 6.6e-59 231.5 212 54.7
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 2.5e-58 229.6 213 53.1
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 4.7e-57 225.3 213 53.1
Sed0011409 Sechium edule HOM05D006745 ORTHO05D008449 7.5e-55 218.0 249 51.8
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 2.2e-54 216.5 198 57.1
FAN28G2493 Fragaria x ananassa HOM05D006745 ORTHO05D008449 8.3e-54 214.5 244 51.6
BraA09t37044Z Brassica rapa HOM05D006745 ORTHO05D008449 3.5e-52 209.1 117 92.3
Aqoxy278s001 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 6.6e-51 204.9 189 57.7
CSS0012608 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.1e-50 204.1 208 56.2
arahy.Tifrunner.gnm1.ann1.N8WRPV Arachis hypogaea HOM05D006745 ORTHO05D008449 2.1e-49 199.9 128 75.8
Pp3c3_3178 Physcomitrium patens HOM05D006745 ORTHO05D008449 8.0e-49 198.0 213 49.3
Glyma.02G164500 Glycine max HOM05D006745 ORTHO05D008449 1.4e-48 197.2 204 49.5
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 1.4e-45 187.2 144 66.0
Medtr3g096570 Medicago truncatula HOM05D006745 ORTHO05D008449 4.0e-40 169.1 118 71.2
Medtr3g096562 Medicago truncatula HOM05D006745 ORTHO05D008449 1.3e-38 164.1 119 69.7
MSTRG.17961 Avicennia marina HOM05D006745 ORTHO05D008449 9.9e-31 137.9 108 64.8
Rhsim01G0268300 Rhododendron simsii HOM05D006745 ORTHO05D008449 8.1e-25 118.2 90 63.3
Hund14069 Selenicereus undatus HOM05D006745 ORTHO05D008449 9.9e-23 111.3 82 70.7
Medtr2g078490 Medicago truncatula HOM05D006745 ORTHO05D008449 1.7e-22 110.5 111 54.1
BolC4t24505H Brassica oleracea HOM05D006745 ORTHO05D008449 3.9e-19 99.4 61 85.2
SEGI_40099 Sequoiadendron giganteum HOM05D006745 ORTHO05D008449 2.8e-17 93.2 86 54.7
COL.COLO4_22483 Corchorus olitorius HOM05D006745 ORTHO05D008449 7.6e-15 85.1 47 85.1
Glyma.11G080201 Glycine max HOM05D006745 ORTHO05D008449 7.9e-12 75.1 64 53.1
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 9.0e-08 61.6 162 28.4
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.5e-07 60.8 161 31.1
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 7.6e-07 58.5 136 32.4
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 7.6e-07 58.5 133 32.3
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 1.3e-06 57.8 140 30.7
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 1.3e-06 57.8 143 27.3
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.7e-06 57.4 152 28.3
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 1.7e-06 57.4 121 31.4
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 1.7e-06 57.4 122 31.1
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 2.2e-06 57.0 166 31.3
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 3.8e-06 56.2 214 26.6
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 3.8e-06 56.2 134 30.6
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 6.4e-06 55.5 133 29.3


User provided reference genes

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