Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 1.6e-187 660.2 646 100.0
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 3.5e-182 642.5 646 98.3
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 2.3e-165 586.6 654 89.4
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 8.6e-165 584.7 653 89.6
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 7.8e-158 561.6 646 93.8
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 1.8e-138 497.3 661 84.1
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 8.9e-138 495.0 662 84.1
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 1.2e-137 494.6 658 88.4
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 1.6e-131 474.2 663 82.4
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 2.1e-131 473.8 662 82.3
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 2.1e-131 473.8 662 82.3
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 1.2e-129 468.0 664 87.2
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 7.6e-129 465.3 664 87.0
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 1.4e-127 461.1 660 81.5
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 1.3e-125 454.5 660 80.8
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 3.8e-120 436.4 664 80.4
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 8.4e-112 408.7 659 77.8
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 2.5e-111 407.1 650 82.2
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 1.6e-86 324.7 676 77.2
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 1.2e-54 218.8 668 66.6
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 4.1e-50 203.8 675 67.0
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 3.3e-47 194.1 664 66.9
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 8.3e-43 179.5 240 54.6
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 1.4e-42 178.7 249 52.6
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 7.8e-41 172.9 683 61.1
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 3.9e-40 170.6 664 63.4
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 8.6e-40 169.5 692 62.9
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 3.3e-39 167.5 694 62.5
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 5.6e-39 166.8 694 62.7
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 6.2e-38 163.3 686 62.5
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 1.4e-37 162.2 676 62.3
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 8.9e-37 159.5 681 59.9
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.2e-36 159.1 694 63.7
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 2.6e-36 157.9 675 64.4
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 5.8e-36 156.8 686 61.5
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 2.2e-35 154.8 676 61.5
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.2e-35 154.8 671 62.3
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 2.9e-35 154.5 695 63.5
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 4.9e-35 153.7 686 62.7
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 4.9e-35 153.7 684 62.3
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 1.4e-34 152.1 674 61.9
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 1.9e-34 151.8 638 66.5
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 1.2e-33 149.1 672 60.3
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 1.6e-33 148.7 672 60.6
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 2.7e-33 147.9 674 61.9
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 3.5e-33 147.5 661 64.9
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 6.0e-33 146.7 685 61.0
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 6.0e-33 146.7 668 62.9
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 6.0e-33 146.7 667 62.5
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.3e-32 145.6 681 60.4
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 3.9e-32 144.1 301 41.5
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 8.6e-32 142.9 666 60.8
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 1.1e-31 142.5 664 60.7
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 1.9e-31 141.7 664 60.7
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 4.3e-31 140.6 690 58.8
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 5.6e-31 140.2 681 60.5
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.8e-30 137.9 304 48.4
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 4.7e-30 137.1 690 58.8
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 6.2e-30 136.7 685 58.0
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 3.1e-29 134.4 675 64.3
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 8.9e-29 132.9 674 64.7
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.2e-28 132.5 687 58.4
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.5e-28 132.1 672 58.3
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 2.0e-28 131.7 297 37.7
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 3.4e-28 131.0 302 40.4
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 9.9e-28 129.4 306 39.9
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 2.2e-27 128.3 676 58.6
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 8.4e-27 126.3 676 62.0
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.1e-26 125.9 696 57.8
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.1e-26 125.9 689 57.9
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 1.9e-26 125.2 675 58.2
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 1.9e-26 125.2 666 59.5
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.4e-26 123.6 684 58.2
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 5.4e-26 123.6 667 58.3
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 7.1e-26 123.2 684 58.2
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.2e-25 122.5 303 36.0
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 2.1e-25 121.7 299 38.5
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 7.8e-25 119.8 673 58.7
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 3.9e-24 117.5 658 61.1
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.9e-24 117.5 696 57.0
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 6.6e-24 116.7 656 43.1
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 8.6e-24 116.3 674 59.1
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 7.3e-23 113.2 299 48.5
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 7.3e-23 113.2 306 35.3
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 2.8e-22 111.3 668 58.1
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 6.2e-22 110.2 305 44.6
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 2.4e-21 108.2 672 59.4
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 5.2e-21 107.1 308 46.1
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 1.2e-20 105.9 301 38.5
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 2.6e-20 104.8 300 44.0
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 4.4e-20 104.0 301 38.5
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 7.6e-20 103.2 295 43.7
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 2.2e-19 101.7 300 36.3
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 2.2e-19 101.7 301 36.2
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 3.8e-19 100.9 676 59.6
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 4.9e-19 100.5 299 41.1
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 8.4e-19 99.8 672 56.2
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 8.4e-19 99.8 299 34.1
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.1e-18 99.4 162 45.7
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.1e-18 99.4 305 44.6
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 1.4e-18 99.0 675 55.9
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 1.9e-18 98.6 684 59.8
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 5.4e-18 97.1 308 38.6
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 7.1e-18 96.7 299 39.5
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 7.1e-18 96.7 682 58.9
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 9.3e-18 96.3 678 56.9
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-17 95.9 661 61.4
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 3.5e-17 94.4 308 34.7
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.6e-17 94.0 299 43.5
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 6.0e-17 93.6 672 56.4
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 3.0e-16 91.3 302 33.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 6.6e-16 90.1 296 33.8
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 8.7e-16 89.7 302 32.8
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 4.3e-15 87.4 665 62.9
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.3e-15 87.4 670 59.6
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 2.8e-14 84.7 299 33.4
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 4.8e-14 84.0 87 57.5
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 6.2e-14 83.6 291 32.3
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 4.0e-13 80.9 265 31.3
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 6.9e-13 80.1 299 42.1
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 6.9e-13 80.1 298 31.2
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 9.0e-13 79.7 301 31.9
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.2e-12 79.3 294 30.3
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 3.4e-12 77.8 287 43.2
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.8e-12 77.0 165 38.2
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 5.8e-12 77.0 291 39.2
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 5.8e-12 77.0 318 31.8
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 7.6e-12 76.6 253 31.2
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 2.2e-11 75.1 139 36.7
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.9e-11 74.7 262 31.7
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 3.8e-11 74.3 271 31.4
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 3.8e-11 74.3 139 36.7
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 4.9e-11 73.9 285 30.5
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.4e-10 72.4 300 32.3
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 1.4e-10 72.4 142 40.1
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 1.4e-10 72.4 296 30.4
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 1.9e-10 72.0 665 59.2
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.9e-10 72.0 648 51.5
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 2.4e-10 71.6 138 39.1
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.2e-10 71.2 288 29.2
AT4G12020 Arabidopsis thaliana HOM05D000005 ORTHO05D012037 4.2e-10 70.9 97 51.5
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 7.1e-10 70.1 271 30.3
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.1e-09 68.6 247 30.4
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.1e-09 68.6 247 30.4
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 2.1e-09 68.6 133 37.6
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.1e-09 68.6 295 32.9
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 3.5e-09 67.8 137 37.2
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 4.6e-09 67.4 179 36.3
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 1.3e-08 65.9 151 31.8
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 3.0e-08 64.7 290 28.3
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 5.1e-08 63.9 299 32.4
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 1.5e-07 62.4 95 48.4
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 1.5e-07 62.4 273 33.0
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.9e-07 62.0 283 27.6
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 1.9e-07 62.0 133 37.6
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 1.9e-07 62.0 245 28.2
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 1.9e-07 62.0 293 27.3
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 2.5e-07 61.6 118 36.4
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 4.3e-07 60.8 115 38.3
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 4.3e-07 60.8 114 36.8
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 4.3e-07 60.8 664 53.6
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 9.6e-07 59.7 129 37.2
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 9.6e-07 59.7 177 31.6
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 2.1e-06 58.5 144 34.7
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 2.1e-06 58.5 177 31.1
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.1e-06 58.5 164 32.9


User provided reference genes

Program Settings