Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-32 141.0 71 100.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 5.2e-31 137.1 71 95.8
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-25 118.6 73 84.9
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-25 118.6 73 84.9
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-25 118.6 73 84.9
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-25 118.6 73 84.9
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.9e-25 118.6 73 84.9
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 2.5e-25 118.2 73 83.6
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 5.6e-25 117.1 73 83.6
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 6.2e-24 113.6 71 83.1
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.3e-21 105.9 79 67.1
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-20 102.4 70 72.9
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-20 102.4 64 79.7
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-20 102.4 62 80.6
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-20 102.4 65 78.5
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.4e-20 102.4 62 80.6
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.4e-20 101.7 65 78.5
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.4e-20 101.7 65 78.5
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.4e-20 101.7 65 78.5
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.4e-20 101.7 65 78.5
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 3.2e-20 101.3 64 78.1
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 3.2e-20 101.3 64 79.7
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.2e-20 101.3 75 70.7
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.2e-20 101.3 67 74.6
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 4.1e-20 100.9 70 72.9
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.4e-20 100.5 74 70.3
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-19 99.0 74 73.0
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.1e-19 98.6 70 68.6
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.6e-19 97.4 71 70.4
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 4.6e-19 97.4 62 77.4
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 4.6e-19 97.4 70 70.0
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 7.8e-19 96.7 77 64.9
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 1.7e-18 95.5 61 77.0
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.7e-18 95.5 59 72.9
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 2.3e-18 95.1 77 64.9
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.5e-17 92.4 70 65.7
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-17 92.4 73 69.9
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.6e-16 89.0 83 60.2
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.1e-16 88.6 77 58.4
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.8e-16 88.2 50 82.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 8.1e-16 86.7 73 63.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.1e-16 86.7 73 63.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.1e-16 86.7 73 63.0
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.1e-15 86.3 74 62.2
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.4e-15 85.9 74 56.8
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.4e-15 85.9 75 60.0
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.4e-15 85.9 72 59.7
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 1.8e-15 85.5 74 56.8
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.1e-15 84.7 73 61.6
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.1e-15 84.7 72 59.7
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.1e-15 84.7 72 59.7
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.1e-15 84.7 72 59.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.1e-15 84.7 74 59.5
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 3.1e-15 84.7 73 58.9
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 4.0e-15 84.3 73 61.6
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.0e-15 84.3 74 58.1
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 5.2e-15 84.0 64 68.8
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 5.2e-15 84.0 72 59.7
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 5.2e-15 84.0 74 58.1
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 6.8e-15 83.6 71 57.7
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.8e-15 83.6 73 60.3
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 8.9e-15 83.2 52 65.4
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.2e-14 82.8 73 60.3
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.2e-14 82.8 72 58.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.2e-14 82.8 72 62.5
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.5e-14 82.4 72 61.1
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.5e-14 82.4 73 61.6
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.0e-14 82.0 71 56.3
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.0e-14 82.0 72 59.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.0e-14 82.0 73 60.3
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.0e-14 82.0 66 57.6
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.6e-14 81.6 72 56.9
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.6e-14 81.6 79 53.2
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 3.4e-14 81.3 74 59.5
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 3.4e-14 81.3 72 61.1
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.4e-14 81.3 72 55.6
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 3.4e-14 81.3 74 62.2
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.4e-14 80.9 72 56.9
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 4.4e-14 80.9 74 56.8
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 9.9e-14 79.7 71 56.3
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 9.9e-14 79.7 72 58.3
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 9.9e-14 79.7 72 58.3
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 9.9e-14 79.7 74 58.1
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 9.9e-14 79.7 72 59.7
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.3e-13 79.3 72 56.9
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.3e-13 79.3 72 56.9
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 2.2e-13 78.6 72 55.6
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.2e-13 78.6 72 54.2
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 2.2e-13 78.6 73 60.3
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.9e-13 78.2 72 54.2
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.7e-13 77.8 76 52.6
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 4.9e-13 77.4 73 54.8
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 4.9e-13 77.4 72 54.2
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 8.3e-13 76.6 73 53.4
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 8.3e-13 76.6 73 53.4
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 8.3e-13 76.6 72 56.9
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.1e-12 76.3 60 58.3
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-12 75.9 74 55.4
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.4e-12 75.9 70 55.7
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.9e-12 75.5 68 55.9
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.9e-12 75.5 72 56.9
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.9e-12 75.5 72 56.9
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.9e-12 75.5 79 54.4
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.9e-12 75.5 72 58.3
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 5.4e-12 73.9 62 58.1
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 5.4e-12 73.9 70 55.7
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 5.4e-12 73.9 60 55.0
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 7.1e-12 73.6 68 51.5
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 9.2e-12 73.2 80 50.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.2e-11 72.8 79 50.6
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.2e-11 72.8 73 57.5
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.6e-11 72.4 74 51.4
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.1e-11 72.0 47 63.8
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.7e-11 71.6 62 56.5
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 3.5e-11 71.2 65 53.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.5e-11 71.2 78 50.0
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 6.0e-11 70.5 79 49.4
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 7.8e-11 70.1 78 50.0
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 7.8e-11 70.1 66 53.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.8e-11 70.1 76 47.4
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.8e-11 70.1 76 47.4
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.0e-10 69.7 72 50.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.3e-10 69.3 63 52.4
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.3e-10 69.3 60 56.7
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.3e-10 69.3 76 46.1
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.3e-10 69.3 76 46.1
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.7e-10 68.9 76 46.1
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.7e-10 68.9 76 46.1
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.7e-10 68.9 47 66.0
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 2.3e-10 68.6 76 46.1
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.0e-10 68.2 76 44.7
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.1e-10 67.4 47 63.8
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.5e-09 65.9 53 54.7
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 1.5e-09 65.9 79 46.8
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.9e-09 65.5 79 49.4
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.9e-09 65.5 67 52.2
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.9e-09 65.5 60 51.7
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 3.3e-09 64.7 56 62.5
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.3e-09 64.3 69 47.8
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.3e-09 64.3 74 47.3
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.6e-09 63.9 69 49.3
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 7.3e-09 63.5 44 61.4
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 9.5e-09 63.2 67 40.3
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.6e-08 62.4 44 59.1
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 4.7e-08 60.8 65 49.2
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 8.1e-08 60.1 42 57.1
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 8.1e-08 60.1 57 50.9
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-07 59.7 62 53.2
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.5e-06 55.8 54 53.7
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 7.6e-06 53.5 49 57.1


User provided reference genes

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