Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.8e-50 202.2 99 100.0
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 5.5e-39 164.1 83 98.8
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 9.5e-39 163.3 83 97.6
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 9.5e-39 163.3 83 97.6
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 9.5e-39 163.3 83 97.6
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 9.5e-39 163.3 83 97.6
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.8e-38 161.8 83 95.2
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 3.4e-36 154.8 89 89.9
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 3.4e-36 154.8 89 89.9
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.4e-36 154.8 82 93.9
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.4e-36 154.8 82 93.9
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.4e-36 154.8 82 93.9
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.4e-36 154.8 82 93.9
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 9.8e-36 153.3 89 88.8
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 9.8e-36 153.3 89 88.8
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 9.8e-36 153.3 89 88.8
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.7e-35 152.5 82 92.7
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 1.7e-35 152.5 82 91.5
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.7e-35 152.5 80 92.5
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.2e-35 152.1 83 89.2
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.2e-35 152.1 83 89.2
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.2e-35 152.1 80 92.5
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.2e-35 152.1 80 92.5
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 2.8e-35 151.8 82 90.2
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 4.9e-35 151.0 81 90.1
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 8.3e-35 150.2 82 89.0
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 2.4e-34 148.7 82 87.8
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 3.1e-34 148.3 88 86.4
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 7.0e-34 147.1 88 84.1
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 9.2e-34 146.7 81 88.9
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 9.2e-34 146.7 81 88.9
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 9.2e-34 146.7 82 87.8
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 9.2e-34 146.7 86 87.2
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 9.2e-34 146.7 89 84.3
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 1.2e-33 146.4 86 87.2
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 3.5e-33 144.8 88 84.1
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 3.5e-33 144.8 88 84.1
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 3.5e-33 144.8 88 83.0
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 4.5e-33 144.4 88 81.8
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 4.5e-33 144.4 86 86.0
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 4.5e-33 144.4 86 86.0
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 4.5e-33 144.4 88 84.1
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 4.5e-33 144.4 88 84.1
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 4.5e-33 144.4 86 86.0
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 4.5e-33 144.4 88 83.0
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 4.5e-33 144.4 88 84.1
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 4.5e-33 144.4 86 86.0
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 5.9e-33 144.1 88 83.0
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 5.9e-33 144.1 86 84.9
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 7.8e-33 143.7 88 83.0
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 7.8e-33 143.7 88 83.0
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 7.8e-33 143.7 88 83.0
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 7.8e-33 143.7 88 83.0
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 7.8e-33 143.7 86 84.9
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 7.8e-33 143.7 86 84.9
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 7.8e-33 143.7 88 81.8
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 1.3e-32 142.9 86 83.7
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 1.3e-32 142.9 88 83.0
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 1.7e-32 142.5 88 81.8
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.7e-32 142.5 88 84.1
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.7e-32 142.5 88 83.0
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 2.3e-32 142.1 85 85.9
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.3e-32 142.1 88 83.0
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 2.3e-32 142.1 95 76.8
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.9e-32 141.7 88 83.0
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.9e-32 141.7 88 83.0
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 2.9e-32 141.7 88 83.0
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 2.9e-32 141.7 86 83.7
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 2.9e-32 141.7 88 83.0
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 3.8e-32 141.4 87 82.8
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 3.8e-32 141.4 88 80.7
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 3.8e-32 141.4 88 81.8
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 5.0e-32 141.0 88 81.8
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 6.6e-32 140.6 88 81.8
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 6.6e-32 140.6 86 82.6
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 1.1e-31 139.8 86 83.7
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 1.1e-31 139.8 85 84.7
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 1.5e-31 139.4 87 80.5
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 1.9e-31 139.0 89 82.0
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 1.9e-31 139.0 85 83.5
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 1.9e-31 139.0 85 83.5
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.9e-31 139.0 85 83.5
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 3.3e-31 138.3 88 80.7
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 3.3e-31 138.3 88 79.5
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 3.3e-31 138.3 85 83.5
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 3.3e-31 138.3 88 80.7
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 5.6e-31 137.5 85 83.5
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 5.6e-31 137.5 86 82.6
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 2.8e-30 135.2 88 77.3
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 3.6e-30 134.8 85 80.0
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 6.1e-30 134.0 86 79.1
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 6.1e-30 134.0 90 78.9
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 6.1e-30 134.0 88 79.5
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 8.0e-30 133.7 88 77.3
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.0e-29 133.3 85 80.0
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 5.2e-29 131.0 89 76.4
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 5.2e-29 131.0 89 76.4
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 1.2e-28 129.8 109 64.2
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 9.8e-28 126.7 87 77.0
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.3e-27 126.3 89 75.3
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 4.9e-27 124.4 74 83.8
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 9.2e-26 120.2 87 72.4
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 3.5e-25 118.2 86 72.1
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 6.6e-24 114.0 71 83.1
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.9e-23 112.5 71 81.7
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 1.9e-23 112.5 71 81.7
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 4.3e-23 111.3 61 91.8
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.6e-22 109.4 63 85.7
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 2.1e-22 109.0 89 66.3
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.6e-22 108.2 104 57.7
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 4.7e-22 107.8 82 69.5
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.8e-21 105.9 59 89.8
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.3e-21 105.5 59 88.1
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 3.1e-21 105.1 57 93.0
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 4.0e-21 104.8 64 79.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 5.2e-21 104.4 57 91.2
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 8.9e-21 103.6 81 71.6
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.7e-19 99.4 69 73.9
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 3.0e-16 88.6 56 82.1
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 4.7e-14 81.3 57 71.9
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 2.9e-11 72.0 60 68.3
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.2e-06 56.6 75 49.3


User provided reference genes

Program Settings